Post on 04-Dec-2014
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Nodes training– Berlin, 04-05 october 2013
Promoting data use I: Introduction
Anne-Sophie Archambeau (archambeau@gbif.fr)
Presentation partly based on Arthur Chapman’s publication:« Uses of primary species-occurence data » published by GBIF
Summary
In the use of biodiversity data is where the efforts of all the
people working to make the data available digitally bears
fruit.
In this module we will make a general review of the most
frequent scenarios of data use, with two objectives: to help
Node managers to promote them, but also to help them
build their own arguments, strategies and plans.
This presentation corresponds to
Module 4A of the GB20 Training
course for Nodes hold in October
2013 in Berlin, Germany.
Outline
1. General review of all use cases
2. Detailed review of nine key cases
3. Sources of information
Outline
1. General review of all use cases
2. Detailed review of nine key cases
3. Sources of information
Uses of Primary Species-Occurrence Data
1. Taxonomy2. Biogeographic studies3. Species diversity and populations4. Life histories and phenologies5. Endangered, Migratory and Invasive Species6. Impact of Climate Change7. Ecology, Evolution and Genetics8. Environmental Regionalisation9. Conservation Planning10. Natural Resource Management11. Agriculture, Forestry, Fisheries and Mining12. Health and Public Safety13. Bioprospecting14. Forensics15. Border Control and Wildlife Trade16. Education and Public Outreach17. Ecotourism and Recreational Activities18. Society and Politics 19. Human Infrastructure Planning
Look at Arthur Chapman’s publication (2005) : Uses of Primary Species-Occurrence Data
(http://imsgbif.gbif.org/CMS_ORC/?doc_id=1300&download=1)
Available in English, French, Chinese and Korean
Outline
1. General review of all use cases
2. Detailed review of nine key cases
3. Sources of information
Uses of Primary Species-Occurrence Data
1. Taxonomy2. Biogeographic studies3. Species diversity and populations4. Life histories and phenologies5. Endangered, Migratory and Invasive Species6. Impact of Climate Change7. Ecology, Evolution and Genetics8. Environmental Regionalisation9. Conservation Planning10. Natural Resource Management11. Agriculture, Forestry, Fisheries and Mining12. Health and Public Safety13. Bioprospecting14. Forensics15. Border Control and Wildlife Trade16. Education and Public Outreach17. Ecotourism and Recreational Activities18. Society and Politics 19. Human Infrastructure Planning
Acacia
simsii
http://www.deh.gov.au/biodiversity/abrs/online-resources/abif/flora/main/index.html
Diapo de A. Chapman
TaxonomyFlora of Australia online
Diapo de A. Chapman
TaxonomyFlora of Australia online
Uses of Primary Species-Occurrence Data
1. Taxonomy2. Biogeographic studies3. Species diversity and populations4. Life histories and phenologies5. Endangered, Migratory and Invasive Species6. Impact of Climate Change7. Ecology, Evolution and Genetics8. Environmental Regionalisation9. Conservation Planning10. Natural Resource Management11. Agriculture, Forestry, Fisheries and Mining12. Health and Public Safety13. Bioprospecting14. Forensics15. Border Control and Wildlife Trade16. Education and Public Outreach17. Ecotourism and Recreational Activities18. Society and Politics 19. Human Infrastructure Planning
Biogeographic studies Distribution of the Eurasian Curlew (Numenius arquata) in Fife, Scotland from theFife Bird Atlas (Elkins et al. 2003) using 2 km grid squares. Map reproduced withpermission of the authors.
Distribution of the Rainbow Bee-eater from The New Atlas of Australian Birds(Barrett et al. 2003). Records are recorded as point records and mapped as a summary in 1-degree grid squares (red) and on 0.25-degree grid squares (grey).
Right-hand image - Potential distribution for Tropidechis carinatis in Australia. Redstars indicate known collections, dots show modelled distribution. Left-hand image shows predicted numbers of species in each 1º x 1.5º cell. From Longmore (1986) with permission of Australian Biological Resources Study.
Salvin’s Mollymook,
Kaikoura, New Zealand
Diapo de A. Chapman
Uses of Primary Species-Occurrence Data
1. Taxonomy2. Biogeographic studies3. Species diversity and populations4. Life histories and phenologies5. Endangered, Migratory and Invasive Species6. Impact of Climate Change7. Ecology, Evolution and Genetics8. Environmental Regionalisation9. Conservation Planning10. Natural Resource Management11. Agriculture, Forestry, Fisheries and Mining12. Health and Public Safety13. Bioprospecting14. Forensics15. Border Control and Wildlife Trade16. Education and Public Outreach17. Ecotourism and Recreational Activities18. Society and Politics 19. Human Infrastructure Planning
Species diversity and populationsEndemisms
0 - 1.25
1.26 - 3.59
3.6 - 6.74
6.75 - 10.4
10.5 - 15.7
15.8 - 22.7
22.8 - 36.1
36.2 - 59.5
59.6 - 102
103 - 177
Amphibia - Weighted endemism score
Australian Heritage Assessment Tool
Department of the Environment & HeritageAustralian Government 2004
0 500 1,000250 Kilometers
Endemism in Australian frogs showing peak areas for frog endemism highlighted inred. Image from the Australian Heritage Assessment Tool; published with permission of Cameron Slatyer and Dan Rosauer, Australian Department of the Environment and Heritage, 2004.
http://www.conservation.org/where/priority_areas/hotspots/Pages/hotspots_main.aspx
To qualify as a hotspot, a region must meet two strict criteria: it must contain at least 1,500 species of vascular plants (> 0.5 percent of the world's total) as endemics, and it has to have lost at least 70 percent of its original habitat.
Species diversity and populationsHotspots
Uses of Primary Species-Occurrence Data
1. Taxonomy2. Biogeographic studies3. Species diversity and populations4. Life histories and phenologies5. Endangered, Migratory and Invasive Species6. Impact of Climate Change7. Ecology, Evolution and Genetics8. Environmental Regionalisation9. Conservation Planning10. Natural Resource Management11. Agriculture, Forestry, Fisheries and Mining12. Health and Public Safety13. Bioprospecting14. Forensics15. Border Control and Wildlife Trade16. Education and Public Outreach17. Ecotourism and Recreational Activities18. Society and Politics 19. Human Infrastructure Planning
See module 4B for a detailed example on IAS
Invasive species: example of the Asian predatory wasp in France(Vespa velutina Lepeletier, 1836)
inpn.mnhn.fr
Invasive species: example of the Asian predatory wasp in France(Vespa velutina Lepeletier, 1836)
inpn.mnhn.fr
Transmitters have been attached on albatros from Tasmania to follow them during 4 months
From the Australian Antarctic Division
Diapo de A. Chapman
Tracking Migratory Species
Uses of Primary Species-Occurrence Data
1. Taxonomy2. Biogeographic studies3. Species diversity and populations4. Life histories and phenologies5. Endangered, Migratory and Invasive Species6. Impact of Climate Change7. Ecology, Evolution and Genetics8. Environmental Regionalisation9. Conservation Planning10. Natural Resource Management11. Agriculture, Forestry, Fisheries and Mining12. Health and Public Safety13. Bioprospecting14. Forensics15. Border Control and Wildlife Trade16. Education and Public Outreach17. Ecotourism and Recreational Activities18. Society and Politics 19. Human Infrastructure Planning
See module 4B for a detailed example on impact on climate change
Uses of Primary Species-Occurrence Data
1. Taxonomy2. Biogeographic studies3. Species diversity and populations4. Life histories and phenologies5. Endangered, Migratory and Invasive Species6. Impact of Climate Change7. Ecology, Evolution and Genetics8. Environmental Regionalisation9. Conservation Planning10. Natural Resource Management11. Agriculture, Forestry, Fisheries and Mining12. Health and Public Safety13. Bioprospecting14. Forensics15. Border Control and Wildlife Trade16. Education and Public Outreach17. Ecotourism and Recreational Activities18. Society and Politics 19. Human Infrastructure Planning
Evolution and Genetics
Source: http://www.barcodeoflife.org
Uses of Primary Species-Occurrence Data
1. Taxonomy2. Biogeographic studies3. Species diversity and populations4. Life histories and phenologies5. Endangered, Migratory and Invasive Species6. Impact of Climate Change7. Ecology, Evolution and Genetics8. Environmental Regionalisation9. Conservation Planning10. Natural Resource Management11. Agriculture, Forestry, Fisheries and Mining12. Health and Public Safety13. Bioprospecting14. Forensics15. Border Control and Wildlife Trade16. Education and Public Outreach17. Ecotourism and Recreational Activities18. Society and Politics 19. Human Infrastructure Planning
See module 4B for a detailed example on conservation planning
Uses of Primary Species-Occurrence Data
1. Taxonomy2. Biogeographic studies3. Species diversity and populations4. Life histories and phenologies5. Endangered, Migratory and Invasive Species6. Impact of Climate Change7. Ecology, Evolution and Genetics8. Environmental Regionalisation9. Conservation Planning10. Natural Resource Management11. Agriculture, Forestry, Fisheries and Mining12. Health and Public Safety13. Bioprospecting14. Forensics15. Border Control and Wildlife Trade16. Education and Public Outreach17. Ecotourism and Recreational Activities18. Society and Politics 19. Human Infrastructure Planning
Example of costs due to the loss of biodiversity
The value of the activity of insects pollination was estimated at € 153 billion in 2005 => If the bees disappear, mankind will pollinate the plant itself => New costs (technology development, salaries workers, etc. ....) for a service for now "free” and yet vital (Ecological Economics, 2008).
Uses of Primary Species-Occurrence Data
1. Taxonomy2. Biogeographic studies3. Species diversity and populations4. Life histories and phenologies5. Endangered, Migratory and Invasive Species6. Impact of Climate Change7. Ecology, Evolution and Genetics8. Environmental Regionalisation9. Conservation Planning10. Natural Resource Management11. Agriculture, Forestry, Fisheries and Mining12. Health and Public Safety13. Bioprospecting14. Forensics15. Border Control and Wildlife Trade16. Education and Public Outreach17. Ecotourism and Recreational Activities18. Society and Politics 19. Human Infrastructure Planning
The Tiger mosquito is known as an important vector for the transmission of many viral pathogens, including the West Nile virus, Yellow fever virus, St. Louis encephalitis, dengue fever…
Slide from Samy Gaiji
Health and Public Safety Diseases and disease vectors : the Tiger Mosquito
Slide from Samy Gaiji
Health and Public Safety Diseases and disease vectors : the Tiger Mosquito
Slide from Samy Gaiji
Health and Public Safety Diseases and disease vectors : the Tiger Mosquito
Slide from Samy Gaiji
Risk area
Current distribution
Health and Public Safety Diseases and disease vectors : the Tiger Mosquito
Uses of Primary Species-Occurrence Data
1. Taxonomy2. Biogeographic studies3. Species diversity and populations4. Life histories and phenologies5. Endangered, Migratory and Invasive Species6. Impact of Climate Change7. Ecology, Evolution and Genetics8. Environmental Regionalisation9. Conservation Planning10. Natural Resource Management11. Agriculture, Forestry, Fisheries and Mining12. Health and Public Safety13. Bioprospecting14. Forensics15. Border Control and Wildlife Trade16. Education and Public Outreach17. Ecotourism and Recreational Activities18. Society and Politics 19. Human Infrastructure Planning
Ecosystemic services:
The Millennium Ecosystem Assessment:http://www.unep.org/maweb/en/index.aspx
The Millennium Ecosystem Assessment assessed the consequences of ecosystem change for human well-being. From 2001 to 2005, the MA involved the work of more than 1,360 experts worldwide. Their findings provide a state-of-the-art scientific appraisal of the condition and trends in the world’s ecosystems and the services they provide, as well as the scientific basis for action to conserve and use them sustainably.
Ecosystems and some services they provide:
Ecosystemic services:
GBIF at work - biodiversity data at the service of science and society
http://www.gbif.org/communications/news-and-events/gbif-symposia-and-workshops/2012-science-symposium/
Uses of Primary Species-Occurrence Data
1. Taxonomy2. Biogeographic studies3. Species diversity and populations4. Life histories and phenologies5. Endangered, Migratory and Invasive Species6. Impact of Climate Change7. Ecology, Evolution and Genetics8. Environmental Regionalisation9. Conservation Planning10. Natural Resource Management11. Agriculture, Forestry, Fisheries and Mining12. Health and Public Safety13. Bioprospecting14. Forensics15. Border Control and Wildlife Trade16. Education and Public Outreach17. Ecotourism and Recreational Activities18. Society and Politics 19. Human Infrastructure Planning
Outline
1. General review of all use cases
2. Detailed review of nine key cases
3. Sources of information
GBIF Symposia and workshops:- GBIF Science Symposium once a year- The GBIF Secretariat also organises symposia on biodiversity informatics at other meetings.
=> abstracts, PowerPoint presentations and other materials related to these events are available here: http://www.gbif.org/communications/news-and-events/gbif-symposia-and-workshops/#c1910
http://uat.gbif.org/usingdata/summary
http://uat.gbif.org/usingdata/sciencerelevance
http://uat.gbif.org/newsroom/uses
GBIF citation in research
www.mendeley.com
1496 papers collected in october 2013
1496 papers collected in october 2013
Data can be reused by other portals: GROMS : Global Register of Migratory Species (www.groms.de)
Nodes training– Berlin, 04-05 october 2013
Promoting data use I: Introduction
Anne-Sophie Archambeau (archambeau@gbif.fr)
Presentation partly based on Arthur Chapman’s publication:« Uses of primary species-occurence data » published by GBIF