Neuronvisio Intro

transcript

IntroductionSoftware

Neuronvisio Tutorial

Michele Mattionimattioni@ebi.ac.uk

EMBL-EBI and University of Cambridge

06 March 2010

Michele Mattioni Neuronvisio Tutorial

Outline

1 IntroductionBackground

2 SoftwareHow to use itWhere to get it

Background

Outline

Background

Why I built it

Eric S. Raymond - The Cathedral and the BazaarEvery good work of software starts by scratching a developer’spersonal itch.

How to use itWhere to get it

Outline

At glance

Visualize a model

It is possible to zoom, rotate and move the model.

Plot the results

Explore the timecourse of a variable

How to integrate in your code

Figure: Python Model integration

Figure: Hoc Model integration

Controls window

Saving simulations results

Complex simulations can take agesStore the results to analyze them later onManager class to create the data structure and to remap itto neuronvisio.

Saving a simulation from the GUI

Integrating that with you cluster’ simulations

Website and Docs

http://mattions.github.com/neuronvisio/

Source code

Latest availableVersion 0.4.3

Download http://pypi.python.org/pypi/neuronvisio/Website http://mattions.github.com/neuronvisio/The code is under GPL3.On the website there are the instruction to install thedependencies

HackingThe current code in development is available from githubgit clone git://github.com/mattions/neuronvisio.git

Source code

Latest availableVersion 0.4.3

Download http://pypi.python.org/pypi/neuronvisio/Website http://mattions.github.com/neuronvisio/The code is under GPL3.On the website there are the instruction to install thedependencies

HackingThe current code in development is available from githubgit clone git://github.com/mattions/neuronvisio.git

That’s all folks

The indecent proposal...Do you want to see a live demo? :)

Neuronvisio Intro

Education