Post on 19-Jan-2016
transcript
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The National Center for
Genome Analysis Support
Supercomputing 2014
November 17-21, 2014
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Who We Are
• Indiana University
• Carrie Ganote – Bioinformatics Analyst• Le-Shin Wu - PhD Computer Scientist• Tom Doak – PhD Genomicist and Biology Liason• Bill Barnett – Director
• Also Staff at Texas Advanced Computing Center, Pittsburgh Supercomputing Center, and the San Diego Supercomputer Center.
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NCGAS Partners
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• NSF Funded Genomics Projects and Project startups.
• National Cancer Institute Funded Investigators and Others Pursuing Transcriptomics Research
• Members of the IU Life Sciences Research Community
NCGAS Audience
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NCGAS Consulting Services
linux $ Help!
home -- bash
Bioinformatics should be available to anyone, regardless of their background in informatics or computer related fields. We help with the following:
Analysis and interpretation of results
Learning to use UNIX
Tools of the trade
Best practices
Experimental design
Software installation Troubleshooting
Letters of commitment for grant proposals
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• Project storage on IU’s Data Capacitor 2
• Long term storage for up to 50 terabytes on IU's Scholarly Data Archive.
• Publication of data sets and final results in the IU ScholarWorks
• Internet2 backbone for fast data transfer
NCGAS Data Services
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• Online training tools at ncgas.org
• Annual Galaxy and Trinity workshops
• Outreach at genomics and computational biology conferences
NCGAS Training and Outreach
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Making IT easier for Biologists
• Web interface to NCGAS resources
• Supports many bioinformatics tools
• Available for both research and instruction.
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• 82 Projects supported, representing more
than $61M in research.
• 51 Training and outreach events, serving
691 people in the last year alone.
• 4.4 out of 5 in user satisfaction.
PTI Technical Report PTI-TR14-005 (http://hdl.handle.net/2022/18513)
NCGAS Productivity
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Host-endosymbiont relationships between filarial nematode and Wolbachia
NCGAS-Supported Science
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Study of complete RNA collection of fruit fly uncovers unprecedented complexity
NCGAS-Supported Science
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North Atlantic Fisheries Decline: Zooplankton
transcriptomes
NCGAS-Supported Science