Post on 27-Mar-2015
transcript
Working Group Meeting2013
Objective 3:Deploy tools to increase user-specified flexible queries
Current model2
MaizeGDB currently allows researchers to access data record-by-record
Goal
DATA: Generating sets of data ANALYSIS: Extracting information based on a set of
data
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Allow researchers access to larger sets of data
Generating sets of data
Physical location Co-occupancy Characteristics Co-Expression Function
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Extracting data based on a set of data
DATA: Sequence Annotations Attributes
ANALYSIS Enrichment Expression
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BioMart
Free, Open Source Standardized Allows integration Flexible Plant DBs: Gramene, Ensembl Plants,
Rice-Map, Potato database, Phytozome MODs : WormBase, Mouse Genome
Informatics, and SalmonDB.
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Sequence7
Annotations8
Attributes9
InterMine
Free, Open Source Data model is flexible and extensible Fast and flexible querying Web interface and analysis tools (focus
on list analysis) Actively being developed and deployed:
RatMine, MouseMine, YeastMine, WormMine, ZFINMine, and FlyMine
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Enrichment11