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@4EW[Z k B s}^zu ^6. m koe K3 Reedbush (K B? :9K' =+8 · @4EW[Z k B s}^zu ^6. >Reedbush (K B?...

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@4EW[ZkB s}^zu^6. >Reedbush(KB? Ýy©¿¤£ùHoJq Reedbushò$ƺ 1 mkoe_K3 :9K'=+8 TMPnq?ð¦"ËĊ/Ė Reedbushò$ƺ 2 9K 1. JqaRk4Ĩ1 2. |t41 3. ĺZ69k$¬4Đ21$jJqo4É 4. ĺ4+$XFnqQ4Đ21$ HoJq$XFnqQ%!Ē$ª! XFnqQ421ŅXFZlqG.(ņ 5. ,r¸sĝ$XFZlqG421 6. ĺñÄ21 Reedbushò$ƺ 3 $ ssh-keygen –t rsa 9K(/ 1. ñÄĺ%|t"1 2. |t41 3. |t41Z69kę1 4. |t$Z69k41 Reedbushò$ƺ 4 $Ļĺ$ąO8l?Pj 4ěŅ¼)ņ .ssh/ $ cd .ssh/ $ ls id_rsa id_rsa.pub known_hosts id_rsa Ŋþ±ĺ id_rsa.pub ŊĻĺ
Transcript
Page 1: @4EW[Z k B s}^zu ^6. m koe K3 Reedbush (K B? :9K' =+8 · @4EW[Z k B s}^zu ^6. >Reedbush (K B? Ýy©¿¤£ùHoJq Reedbush ò$ƺ 1 m koe_ K3 :9K' =+8 TMPnq?ð¦"Ë / Reedbush ò$ƺ

@4EW[Z�k�B��s}^zu�^6.�>Reedbush (K��B?

Ýy©­¿¤£ùHoJq

Reedbush�ò$ƺ 1

m�koe_�K3��:9K'�=+8�TMPnq?ð¦"ËĊ���/Ė������

Reedbush�ò$ƺ 2

9K��

1. JqaRk4Ĩ��1

2. |t4���1

3. ĺZ69k$�¬�4Đ�21$��jJqo4É�

4. ĺ4���+$XFnqQ4Đ�21$��HoJq$XFnqQ�%!��Ē�$ª !XFnqQ4�21ŅXFZlqG�.(ņ

5. ,�r¸�sĝ$XFZlqG4�21

6. ĺ�ñÄ�21

Reedbush�ò$ƺ 3

$ ssh-keygen –t rsa

9K (��/��1. ñÄ��ĺ%�|t"����1

2. |t4���1

3. |t4���1��Z69k�ę1

4. ����|t$Z69k4���1

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�$�Ļĺ$�ąO8l?Pj4ě��Ņ¼���)�ņ

.ssh/

$ cd .ssh/

$ ls id_rsa id_rsa.pub known_hosts

id_rsa Ŋþ±ĺ

id_rsa.pub Ŋ�Ļĺ

Page 2: @4EW[Z k B s}^zu ^6. m koe K3 Reedbush (K B? :9K' =+8 · @4EW[Z k B s}^zu ^6. >Reedbush (K B? Ýy©¿¤£ùHoJq Reedbush ò$ƺ 1 m koe_ K3 :9K' =+8 TMPnq?ð¦"Ë / Reedbush ò$ƺ

ReedbushNK:9K+8• Web[i:C�öĹò]qE"7?HF�1

• gqC¡�XFnqQ4Đ�21$��HoJq�/õĖ�2�gqC¡�XFnqQ4�21�

• éÀŊĝī�2�XFnqQ�$))�%NGń

Reedbush�ò$ƺ 5

https://reedbush-www.cc.u-tokyo.ac.jp/

d�f�*0Koc~�lK��

• ŅĶ{ħÑ"%ÙÌīņ

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• Ø�$m@9oÖ"XFnqQ§×4å+/21$��Ò��XFnqQ4���������

Reedbush�ò$ƺ 8

Page 3: @4EW[Z k B s}^zu ^6. m koe K3 Reedbush (K B? :9K' =+8 · @4EW[Z k B s}^zu ^6. >Reedbush (K B? Ýy©¿¤£ùHoJq Reedbush ò$ƺ 1 m koe_ K3 :9K' =+8 TMPnq?ð¦"Ë / Reedbush ò$ƺ

25K�"

• “Change Language” �ÔÛģ"§×� )��• “Japanese (JA_JP.UTF-8)” 4Ĵ5� “Change”4É�• Ĉ3��/�[i:C��ĥ*Ĭ*

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2. ��4ĴÈ

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1. ¶�cSfq$��Ļĺ7M\mqQ�4?jM?�1

2. ��Ļĺ4Į��4?jM?��óŁ"�Ļĺ4AYq7oQ]qFP�1

3. �~�_Jo4�

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t�f|);�:9+8�

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]qFP¼?jM?

�Ļĺ4]qFP

cat ~/.ssh/id_rsa.pub

Page 4: @4EW[Z k B s}^zu ^6. m koe K3 Reedbush (K B? :9K' =+8 · @4EW[Z k B s}^zu ^6. >Reedbush (K B? Ýy©¿¤£ùHoJq Reedbush ò$ƺ 1 m koe_ K3 :9K' =+8 TMPnq?ð¦"Ë / Reedbush ò$ƺ

t�f|);�:9+8���

Reedbush�ò$ƺ 13

]qFP��ĺ�ėü�2��2&OK

co_�NK}^Y�

Reedbush�ò$ƺ 14

ReedbushN}^Y�• JqaRk�/�|t4���1$ ssh –Y reedbush.cc.u-tokyo.ac.jp -l txxxxx

�-l�%V9Zo�´Ð«$Ō�� -Y�%V9Zo�©Ð«$Y �txxxxx�%�òďô�

• ËĊ�1��³#/21$�� yes 4���1

• ĺ$Ğ®Ö"�2�Ē��æ+�XFnqQŅXFZlqGņ4���1

• Ä��1��m@9o�� 1

Reedbush�ò$ƺ 15

ReedbushKj�fUPCJ�S7P• JqaRk�scpA`oQ4��

• $ scp [email protected]:~/a.f90 ./

�txxxxx�%�òďô�• Reedbushs$^qbO8l?Pj"�1 a.f904PC$=loPO8l?Pj"����1

• O8l?Pj������1¥�% -r4Ê®�1• $ scp -r [email protected]:~/SAMP ./

• Reedbushs$^qbO8l?Pj"�1SAMPZ;kK4��$vĩ���PC$=loPO8l?Pj"����1

Reedbush�ò$ƺ 16

Page 5: @4EW[Z k B s}^zu ^6. m koe K3 Reedbush (K B? :9K' =+8 · @4EW[Z k B s}^zu ^6. >Reedbush (K B? Ýy©¿¤£ùHoJq Reedbush ò$ƺ 1 m koe_ K3 :9K' =+8 TMPnq?ð¦"Ë / Reedbush ò$ƺ

PCKqVY|UReedbushJ-C•  á"JqaRk�scpA`oQ4��

• $ scp ./a.f90 [email protected]:

�txxxxx�%�òďô�• PC$=loPO8l?Pj"�1 a.f904�Reedbushs$^qbO8l?Pj"Č�

• O8l?Pj��Č�"%� -r4Ê®�1• $ scp -r ./SAMP [email protected]:

• PC$=loPO8l?Pj"�1SAMPZ;kK4��$vĩ���Reedbushs$^qbO8l?Pj"Č�

Reedbush�ò$ƺ 17

EmacsKTramp$/JRTqVY| ���1I�KO�• emacs�Ē�$XIAo"����1z%�Trampãđ".1IJĿZ69k$Î~,�đ

• Reedbush$þ±ĺ4SSH"öĹ�1• emacs4Ĩ�• Z69kÞĆdqQ"�1

^x ^f ŅŎ%controlņ• “Find file: ”$î¢$XF¡ĵ�4ê��|t4���1Ņtxxxxx%Ē�$m@9oID"�1ņFind file:/ssh:[email protected]:

• XFZlqG4�21��mq=kZ69k$.�"Reedbushs$Z69k�ċŀ� 1

Reedbush�ò$ƺ 18

GUIJRTqVY| ���JWindowsx�`�D�• FileZilla-WinSCP4�&Æ�$XIAo�Reedbushļ$Z69kĪį4GUIÎ~�Ė����� 1

• FilzeZilla• https://filezilla-project.org

• “Download Filezilla Client”�/K:omqQ• B9P`TqEe"�\mPAk4SFTP"Ğ®�m@<o$ĀŃ4ĺZ69k"�1ŅPutty»¹$�ĻĺZ69k�½Ę�puttygen".��§Í�1�Ĕ�ņ

• WinSCP• https://winscp.net/eng/download.php

• \mPAk4SFTP)�%SCP"Ğ®�1• ^FPĞ®óŁ$Ğ®�/SSH-ĢĠ4Ĵ'�þ±ĺ4Ê®�1ŅOpenSSH»¹pPutty»¹$uÓ"²¾ņ

Reedbush�ò$ƺ 19

ReedbushJ@DT%�• /home Z69kDFNb%°ĸ�´���m@9o"½Ę!Z69k��4Č��+$¥Å���• /home "Č��Z69k%ĜăUqQ�/�ì� )�5�Eh[$¯Ė,� )�5�

• Īį�Ĉ3��/�/lustreZ69kDFNb"ÿ�(mv)�������

• )�%�úË /lustreZ69kDFNb4Ê®��Īį�������

• ^qbO8l?Pj: /home/gt00/txxxxx• cdA`oQ�ÿ�� )��

• LustreO8l?Pj: /lustre/gt00/txxxxx• cdwA`oQ�ÿ�� )��

Reedbush�ò$ƺ 20

Page 6: @4EW[Z k B s}^zu ^6. m koe K3 Reedbush (K B? :9K' =+8 · @4EW[Z k B s}^zu ^6. >Reedbush (K B? Ýy©¿¤£ùHoJq Reedbush ò$ƺ 1 m koe_ K3 :9K' =+8 TMPnq?ð¦"Ë / Reedbush ò$ƺ

�����8 (1/3)• emacs$Ĩ�Ŋ emacs ċŀZ69k¡

• ^x ^sŅ^%controlņŊN>FP$�¬• ^x ^cŊĈxŅ ^z �Ĉx�!����1�FXAo$Ħĕ�s�1�+ĉ²"�!���ņ

• ^gŊ~ß$�êŅğ�3�/!�!��� ",ņ• ^k Ŋ=qIk.0ĖÚ)�ê��ê��Ė%rÖø"ĝÃ�21• ^yŊ^k�ê��Ė4�î¢$=qIk$¥Å"AYq�1• ^s Ы�ŊЫ�$ĂÅ)�ÿ��1ŅÞĆãđņ• ^M x goto-lineŊÊ®��Ė)�ÿ��1

Reedbush�ò$ƺ 21

�����8 (2/3)• rmZ69k¡Ŋ Z69k¡$Z69k4ê�

• rm *~ : test.c~ ! $�~����WM?7M\Z69k4ê�����Ö%Âķ"�*~ $ļ"ā÷�����)�����ê)��

• ls : î¢�1Z;kK$vĩ4ę1• cd Z;kK¡ŊZ;kK"ÿ��1

• cd .. : r�s$Z;kK"ÿ��1• cd ~Ŋ^qbO8l?Pj"ÿ��1

• cat Z69k¡Ŋ Z69k$vĩ4ėü�1

• make : ¯ĖZ69k4~1ŅMakefile"ij�!ĝĭ�½Ęņ• make clean : ¯ĖZ69k4ê�Ņclean �Makefile�®č�2��1½Ę��1ņ

Reedbush�ò$ƺ 22

�����8 (3/3)• less Z69k¡Ŋ Z69k¡$vĩ4ę1ŅF?mqkÎ~��đ!�+�1óŁ�%�)/!�¥�"��ņ• F]qF>q : 1óŁF?mqk• / ŊЫ�$ĂÅ)�ÿ�• q ŊĈx

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co_��GKs}^zvK�0�Eh[�$¯Ė»Á�¯ĖÓè"���

Reedbush�ò$ƺ 24

Page 7: @4EW[Z k B s}^zu ^6. m koe K3 Reedbush (K B? :9K' =+8 · @4EW[Z k B s}^zu ^6. >Reedbush (K B? Ýy©¿¤£ùHoJq Reedbush ò$ƺ 1 m koe_ K3 :9K' =+8 TMPnq?ð¦"Ë / Reedbush ò$ƺ

Reedbush-Hc�o�_�pw�facivGKbyr�0��• |t$ʼnİ0��0)�• 9oJi?N8[Eh[¯Ė

• ōŋ�$¯Ė$.�"�A`oQ4����¯Ė�1Óè

• FXAoð¦�%��)0rēø�!�• OWM?ò�©Ěâ¯Ė%� !�• Reedbush-H�%�|t"Ľ®

• ňUqQŅ36A7, 2GPUņŊ15�)�• 2UqQŅ72A7, 4GPUņŊ5�)�

• WMLEh[¯Ė• WMLEh[DFNb"�ï4�ł��¯Ė�1Óè• ¯Ė�����ï4Z69kŅEh[F?j\Pņ�Êü�1• FXAoð¦�rēø

• ©Ěâ¯Ėò• Reedbush-U�%�Ø©128UqQŅ4,608A7ņ(24Öļ)

Reedbush�ò$ƺ 25

�3,�_cb�qNStonj|v�/RV;#�2s�r10�UN

Y�fz]iXr�0KQS!

• A`oQi9o�|t4��• 1UqQ¯Ėò• $ qsub -I -q u-interactive -l select=1

-l walltime=01:00 -W group_list=gt00

• 4UqQ¯Ėò• $ qsub -I -q u-interactive -l select=4

-l walltime=01:00 -W group_list=gt00

Reedbush�ò$ƺ 26

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• �ņ IntelAoX9i• CAoX9i: icc, mpiicc (Intel MPI4��¥�ņ• Fortran90AoX9i: ifort, mpiifort (Intel MPI4��¥�ņ

Reedbush�ò$ƺ 27

nhg�&HL

• FXAoð¦�%�İ·%�9oJi?N8[¯ĖŅA`oQi9o�¯Ė�1��ņ%� )�5�

• Eh[%WML�ï�¯Ė�)��

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Page 8: @4EW[Z k B s}^zu ^6. m koe K3 Reedbush (K B? :9K' =+8 · @4EW[Z k B s}^zu ^6. >Reedbush (K B? Ýy©¿¤£ùHoJq Reedbush ò$ƺ 1 m koe_ K3 :9K' =+8 TMPnq?ð¦"Ë / Reedbush ò$ƺ

nhg\w�K3�KEAF

• Reedbush�$WML�ï%�Altairý$WMLDFNbPBS Professional�Ąï�2��)��

• |t�wĘA`oQ4ĤÕ�)��• Eh[$Ç�Ŋqsub <Eh[F?j\PZ69k¡>• Ē��Ç���Eh[$íçûĢŊrbstat• Ç�Eh[$�ľŊqdel <Eh[ID>• WML>fq$íÁ4ę1Ŋrbstat --rsc• WML>fq$ġćàÄ4ę1Ŋrbstat --rsc -x• Ç�/2��1Eh[Ï4ę1Ŋrbstat -b• ı�$Ç�µä4ę1Ŋrbstat -H•  Ö"Ç�� 1ÏŇ¯Ė� 1Ï4ę1Ŋrbstat --limit

Reedbush�ò$ƺ 29

byrc]{skK�

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��/EIJ=�&QXKM�9)R��S(PYUG

#!/bin/bash#PBS -q u-lecture#PBS -Wgroup_list=gt00#PBS -l select=1#PBS -l walltime=00:01:00cd $PBS_O_WORKDIR. /etc/profile.d/modules.sh

./a.out

~l�kf��w��u-lecture

'f��w��gt00

w�f}y]�/

's�r!

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=loPO8l?PjĞ®�ð¦§ÏĞ®Ņ½��2��ņ

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• ÛëĎv$>fq¡Ŋ• h-tutorial • Ø©10�)�• Ø©UqQÏ%2UqQ(4GPU) )�

• ÛëĎÖļ|¨Ņ24Öļņ$>fq¡Ŋ• h-lecture• �òÜ}%ëĎv$>fq¡� á

• @kq\¡Ŋgt00

Reedbush�ò$ƺ 31

rbstat --rsc K�0);�

Reedbush�ò$ƺ 32

$ rbstat --rscQUEUE STATUS NODEu-debug [ENABLE ,START] 54u-short [ENABLE ,START] 16u-regular [ENABLE ,START]|---- u-small [ENABLE ,START] 288|---- u-medium [ENABLE ,START] 288|---- u-large [ENABLE ,START] 288|---- u-x-large [ENABLE ,START] 288

u-interactive [ENABLE ,START]|---- u-interactive_1 [ENABLE ,START] 54|---- u-interactive_4 [ENABLE ,START] 54

u-lecture [ENABLE ,START] 54u-lecture8 [DISABLE,START] 54u-tutorial [ENABLE ,START] 54

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rbstat --rsc -xK�0);�

Reedbush�ò$ƺ 33

$ rbstat --rsc -xQUEUE STATUS MIN_NODE MAX_NODE MAX_ELAPSE REMAIN_ELAPSE MEM(GB)/NODE PROJECTu-debug [ENABLE ,START] 1 24 00:30:00 00:30:00 244GB pz0105,gcXXu-short [ENABLE ,START] 1 8 02:00:00 02:00:00 244GB pz0105,gcXXu-regular [ENABLE ,START]|---- u-small [ENABLE ,START] 4 16 12:00:00 12:00:00 244GB gcXX,pz0105|---- u-medium [ENABLE ,START] 17 32 12:00:00 12:00:00 244GB gcXX|---- u-large [ENABLE ,START] 33 64 12:00:00 12:00:00 244GB gcXX|---- u-x-large [ENABLE ,START] 65 128 06:00:00 06:00:00 244GB gcXX

u-interactive [ENABLE ,START]|---- u-interactive_1 [ENABLE ,START] 1 1 00:15:00 00:15:00 244GB pz0105,gcXX|---- u-interactive_4 [ENABLE ,START] 2 4 00:05:00 00:05:00 244GB pz0105,gcXX

u-lecture [ENABLE ,START] 1 8 00:10:00 00:10:00 244GB gt00,gtYYu-lecture8 [DISABLE,START] 1 8 00:10:00 00:10:00 244GB gtYYu-tutorial [ENABLE ,START] 1 8 00:10:00 00:10:00 244GB gt00

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rbstat --rsc -bK�0);�

Reedbush�ò$ƺ 34

$ rbstat --rsc –bQUEUE STATUS TOTAL RUNNING QUEUED HOLD BEGUN WAIT EXIT TRANSIT NODEu-debug [ENABLE ,START] 1 1 0 0 0 0 0 0 54u-short [ENABLE ,START] 9 3 5 1 0 0 0 0 16u-regular [ENABLE ,START]|---- u-small [ENABLE ,START] 38 10 6 22 0 0 0 0 288|---- u-medium [ENABLE ,START] 2 2 0 0 0 0 0 0 288|---- u-large [ENABLE ,START] 4 2 0 2 0 0 0 0 288|---- u-x-large [ENABLE ,START] 1 0 1 0 0 0 0 0 288

u-interactive [ENABLE ,START]|---- u-interactive_1 [ENABLE ,START] 0 0 0 0 0 0 0 0 54|---- u-interactive_4 [ENABLE ,START] 0 0 0 0 0 0 0 0 54

u-lecture [ENABLE ,START] 0 0 0 0 0 0 0 0 54u-lecture8 [DISABLE,START] 0 0 0 0 0 0 0 0 54u-tutorial [ENABLE ,START] 0 0 0 0 0 0 0 0 54

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