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6 RX Organic PDF

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    1

    Understanding Organic Reactions

    Equations for organic reactions are usually drawn with a

    single reaction arrow (

    ) between the starting material and

    product.

    The reagent, the chemical substance with which an organic

    compound reacts, is sometimes drawn on the left side of the

    equation with the other reactants. At other times, the reagent

    is drawn above the arrow itself.

    Al though the solven t is of ten omit ted from the equat ion, most

    organic reactions take place in liquid solvent.

    The solvent and temperature of the reaction may be added

    above or below the arrow.

    The symbols h

    and

    are used for reactions that require

    light and heat respectively.

    Writing Equations for Organic Reactions

    2

    Understanding Organic Reactions

    Writing Equations for Organic Reactions

    Figure 6.1Different ways of writing

    organic reactions

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    Understanding Organic Reactions

    Writing Equations for Organic Reactions

    When two sequential reactions are carried out without

    drawing any intermediate compound, the steps are usually

    numbered above or below the reaction arrow. This convention

    signifies that the first step occurs before the second step,

    and the reagents are added in sequence, not at the same time.

    4

    Understanding Organic Reactions

    Kinds of Organic Reactions

    A substitution is a reaction in which an atom or a group

    of atoms is replaced by another atom or group of atoms.

    In a general substitut ion, Y replaces Z on a carbon atom.

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    Understanding Organic Reactions

    Kinds of Organic Reactions

    Substitution reactions involve bonds: one bond breaksand another forms at the same carbon atom.

    The most common examples of substitution occur when Z is

    a hydrogen or a heteroatom that i s more electronegative than

    carbon.

    6

    Understanding Organic Reactions

    Kinds of Organic Reactions

    Elimination is a reaction in which elements of the

    starting material are lost and a

    bond is formed.

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    Understanding Organic Reactions

    Kinds of Organic Reactions

    In an elimination reaction, two groups X and Y are removedfrom a starting material.

    Two

    bonds are broken, and a

    bond is formed between

    adjacent atoms.

    The most common examples of elimination occur when X = H

    and Y is a heteroatom more electronegative than carbon .

    8

    Understanding Organic Reactions

    Kinds of Organic Reactions

    Addition is a reaction in which elements are added to the

    starting material.

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    Understanding Organic Reactions

    Kinds of Organic Reactions

    In an addition reaction, new groups X and Y are added tothe starting material. A bond is broken and two

    bonds are formed.

    10

    Understanding Organic Reactions

    Kinds of Organic Reactions

    Addition and elimination reactions are exactly opposite.

    A bond is formed in elimination reactions, whereas a

    bond is broken in addition reactions.

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    Understanding Organic Reactions

    Bond Making and Bond Breaking

    A reaction mechanism is a detailed description of how bonds

    are broken and formed as starting material is converted into

    product.

    A reaction can occur either in one step o r a ser ies of steps.

    12

    Understanding Organic ReactionsBond Making and Bond Breaking

    Regardless of how many steps there are in a reaction, there

    are only two ways to break (cleave) a bond: the electrons in

    the bond can be divided equally or unequally between the two

    atoms of the bond.

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    13

    Understanding Organic Reactions

    Bond Making and Bond Breaking

    Homolysis and heterolysis require energy.

    Homolysis generates uncharged reactive intermediates with

    unpaired electrons.

    Heterolysis generates charged intermediates.

    14

    Understanding Organic Reactions

    Bond Making and Bond Breaking

    To illustrate the movement of a single electron, use a half-

    headed curved arrow, sometimes called a fishhook.

    A fu ll headed curved arrow shows the movement of an

    electron pair.

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    Understanding Organic Reactions

    Homolysis generates two uncharged species with

    unpaired electrons.

    A reactive intermediate wi th a single unpaired electron is

    called a radical.

    Radicals are highly unstable because they contain an

    atom that does not have an octet of electrons.

    Heterolysis generates a carbocation or a carbanion.

    Both carbocations and carbanions are unstable

    intermediates. A carbocation contains a carbon

    surrounded by only six electrons, and a carbanion has anegative charge on carbon, which is not a very

    electronegative atom.

    Bond Making and Bond Breaking

    16

    Understanding Organic ReactionsBond Making and Bond Breaking

    Figure 6.2Three reactive intermediates

    resulting from homolysis andheterolysis of a C Z bond

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    Understanding Organic Reactions

    Radicals and carbocations are electrophiles because theycontain an electron deficient carbon.

    Carbanions are nucleophiles because they contain a carbon

    with a lone pair.

    Bond Making and Bond Breaking

    18

    Understanding Organic Reactions

    Bond formation occurs in two different ways.

    Two radicals can each donate one electron to form a two-

    electron bond.

    Al ternat ively , two ions with un like charges can come

    together, with the negatively charged ion donating both

    electrons to form the resulting two-electron bond.

    Bond formation always releases energy.

    Bond Making and Bond Breaking

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    19

    Understanding Organic Reactions

    A number of types of arrows are used in descr ib ing organic

    reactions.

    Bond Making and Bond Breaking

    20

    Understanding Organic Reactions

    Bond Dissociation Energy

    The energy absorbed or released in any reaction, symbolized

    by H0, is called the enthalpy change or heat of reaction.

    Bond dissociation energy is the H0 for a specific kind of

    reactionthe homolysis of a covalent bond to form two

    radicals.

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    21

    Understanding Organic Reactions

    Bond Dissociation Energy

    Because bond breaking requires energy, bond dissociation

    energies are always positive numbers, and homolysis is always

    endothermic.

    Conversely, bond formation always releases energy, and thus is

    always exothermic. For example, the HH bond requires +104

    kcal/mol to cleave and releases 104 kcal/mol when formed.

    22

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    Understanding Organic Reactions

    Bond Dissociation Energy

    Comparing bond dissociation energies is equivalent to

    comparing bond strength.

    The stronger the bond, the higher its bond dissociation energy.

    Bond dissociation energies decrease down a column of the

    periodic table.

    Generally, shorter bonds are stronger bonds.

    24

    Understanding Organic Reactions

    Bond Dissociation Energy

    Bond dissociation energies are used to calculate the enthalpy

    change (H0) in a reaction in which several bonds are broken

    and formed.

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    Understanding Organic Reactions

    Bond Dissociation Energy

    26

    Understanding Organic Reactions

    Bond Dissociation Energy

    Consider the oxidation of isooctane and glucose to yield CO2and H2O.

    H is negative for both oxidations, so both reactions areexothermic.

    Both isooctane and glucose release energy on oxidation

    because the bonds in the products are stronger than the bonds

    in the reactants.

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    Understanding Organic Reactions

    Bond Dissociation Energy

    Bond dissociation energies have some important limitations.

    Bond dissociation energies present overall energy changes

    only. They reveal nothing about the reaction mechanism or

    how fast a reaction proceeds.

    Bond dissociation energies are determined for reactions in

    the gas phase, whereas most organic reactions occur in a

    liquid solvent where solvation energy contributes to the

    overall enthalpy of a reaction.

    Bond dissociation energies are imperfect indicators of energy

    changes in a reaction. However, using bond dissociationenergies to calculate H gives a useful approximation of theenergy changes that occur when bonds are broken and

    formed in a reaction.

    28

    Understanding Organic Reactions

    Thermodynamics

    For a reaction to be practical, the equilibr ium must favor

    products and the reaction rate must be fast enough to form them

    in a reasonable time. These two conditions depend on

    thermodynamics and kinetics respectively.

    Thermodynamics describes how the energies of reactants and

    products compare, and what the relative amounts of reactants

    and products are at equilibrium.

    Kinetics describes reaction rates.

    The equilibrium constant, Keq, is a mathematical expression that

    relates the amount of starting material and product atequilibrium.

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    Understanding Organic Reactions

    Thermodynamics The size of Keq expresses whether the starting materials or

    products predominate once equilibrium is reached. When Keq > 1, equilibrium favors the products (C and D) and the

    equilibrium lies to the right as the equation is written.

    When Keq < 1, equilibrium favors the starting materials (A and B)

    and the equili brium l ies to the left as the equation is written.

    For a reaction to be useful, the equilibrium must favor the

    products, and Keq > 1.

    The position of the equilibrium is determined by the relative

    energies of the reactants and products.

    G is the overall energy difference between reactants andproducts.

    30

    Understanding Organic Reactions

    Thermodynamics

    Figure 6.3Summary of the relationship

    between G and Keq

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    Understanding Organic Reactions

    Thermodynamics

    G is related to the equilibrium constant Keq by the followingequation:

    When Keq > 1, log Keq is positive, making G negative, andenergy is released. Thus, equilibrium favors the products when

    the energy of the products is lower than the energy of the

    reactants.

    When Keq < 1, log Keq is negative, making G positive, andenergy is absorbed. Thus, equilibrium favors the reactants when

    the energy of the products is higher than the energy of the

    reactants.

    32

    Understanding Organic Reactions

    Thermodynamics Compounds that are lower in energy have increased stability.

    The equilibrium favors the products when they are more stable

    (lower in energy) than the starting materials of a reaction.

    Because G depends on the logarithm of Keq, a small change inenergy corresponds to a large difference in the relative amount

    of starting material and product at equilibrium.

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    35

    Understanding Organic Reactions

    Enthalpy and Entropy

    This equation indicates that the total energy change is due

    to two factors: the change in bonding energy and the

    change in disorder.

    The change in bonding energy can be calculated from bond

    dissociation energies.

    Entropy changes are important when

    The number of molecules of starting material differs

    from the number of molecules of product in the

    balanced chemical equation.

    An acycl ic molecule is cycl ized to a cycl ic one, or a

    cyclic molecule is converted to an acyclic one.

    36

    Understanding Organic Reactions

    Enthalpy and Entropy

    In most other reactions that are not carried out at high

    temperature, the entropy term (TS) is small compared to theenthalpy term (H0), and therefore it is usually neglected.

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    Understanding Organic Reactions

    Energy Diagrams

    An energy diagram is a schematic representation of the energychanges that take place as reactants are converted to products.

    An energy diagram plots the energy on the y axis versus the

    progress of reaction, often labeled as the reaction coord inate, on

    the x axis.

    The energy difference between reactants and products is H. Ifthe products are lower in energy than the reactants, the reaction

    is exothermic and energy is released. If the products are higher

    in energy than the reactants, the reaction is endothermic and

    energy is consumed.

    The unstable energy maximum as a chemical reaction proceeds

    from reactants to products is called the transition state. The

    transition state species can never be isolated.

    The energy difference between the transition state and the

    starting material is called the energy of activation, Ea.

    38

    Understanding Organic Reactions

    Energy Diagrams For the general reaction:

    The energy diagram would be shown as:

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    Understanding Organic Reactions

    Energy Diagrams

    The energy of activation is the minimum amount of energy

    needed to b reak the bonds in the reactants.

    The larger the Ea, the greater the amount of energy that is

    needed to b reak bonds, and the slower the reaction rate.

    The structure of the transition state is somewhere between the

    structures of the starting material and product. Any bond that is

    partially formed or broken is drawn with a dashed line. Any atom

    that gains or loses a charge contains a partial charge in the

    transition state.

    Transition states are drawn in brackets, with a superscript

    double dagger ().

    40

    Understanding Organic Reactions

    Energy Diagrams

    Example 1Figure 6.4Some representative

    energy diagrams

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    Understanding Organic Reactions

    Energy Diagrams

    Example 2Figure 6.4Some representative

    energy diagrams

    42

    Understanding Organic Reactions

    Energy Diagrams

    Example 3Figure 6.4Some representative

    energy diagrams

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    43

    Understanding Organic Reactions

    Energy Diagrams

    Example 4Figure 6.4Some representative

    energy diagrams

    44

    Understanding Organic ReactionsEnergy Diagrams

    Figure 6.5Comparing H and Ea in two

    energy diagrams

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    45

    Understanding Organic Reactions

    Energy Diagrams

    Consider the following two step reaction:

    An energy diagram must be drawn for each step.

    The two energy diagrams must then be combined to form anenergy diagram for the overall two-step reaction.

    Each step has its own energy barrier, with a transition state at

    the energy maximum.

    46

    Understanding Organic Reactions

    Energy Diagrams

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    Understanding Organic Reactions

    Energy Diagrams

    48

    Understanding Organic Reactions

    Energy Diagrams

    Figure 6.6Complete energy diagram for

    the two-step conversion of

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    49

    Understanding Organic Reactions

    Kinetics

    Kinetics is the study of reaction rates.

    Recall that Ea is the energy barrier that must be exceeded

    for reactants to be converted to products.

    50

    Understanding Organic Reactions

    Kinetics

    The higher the concentration, the faster the rate.

    The higher the temperature, the faster the rate.

    G, H, and Keq do not determine the rate of a reaction.These quantities indicate the direction of the equilibrium and

    the relative energy o f reactants and products.

    A rate law or rate equation shows the relationship between

    the reaction rate and the concentration of the reactants. It is

    experimentally determined.

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    Understanding Organic ReactionsKinetics

    Fast reactions have large rate constants.

    Slow reactions have small rate constants.

    The rate constant k and the energy of activation Ea are inversely

    related. A high Ea corresponds to a small k.

    A rate equat ion contains concentrat ion terms for all reactants in

    a one-step mechanism.

    A rate equation contains concentrat ion terms for on ly the

    reactants involved in the rate-determining step in a multi-step

    reaction.

    The order of a rate equation equals the sum of the exponents of

    the concentration terms in the rate equation.

    52

    Understanding Organic Reactions

    Kinetics

    A two-step reaction has a s low rate-determining step, and a fast

    step.

    In a multi-step mechanism, the reaction can occur no faster than

    its rate-determining step.

    Only the concentration of the reactants in the rate-determining

    step appears in the rate equation.

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    53

    Understanding Organic Reactions

    Catalysts Some reactions do not proceed at a reasonable rate unless a

    catalyst is added.

    A catalyst is a substance that speeds up the rate of a react ion. It

    is recovered unchanged in a reaction, and it does not appear in

    the product.

    Figure 6.7The effect of a catalyst

    on a reaction

    54

    Understanding Organic Reactions

    Enzymes Enzymes are biochemical catalysts composed of amino acids

    held together in a very specific three-dimensional shape.

    An enzyme contains a region called i ts act ive si te which binds an

    organic reactant, called a substrate. The resulting unit is called

    the enzyme-substrate complex.

    Once bound, the organic substrate undergoes a very specific

    reaction at an enhanced rate. The products are then released.

    Figure 6.8A schematic representation

    of an enzyme at work


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