VII. REFERENCES

ABE, H. K., YAMAGUCHI-SCHINOZAKI., URAO, T., IWASAKI, T., HOSOKAWA, D. AND SHINOZAKI, K., 1997, Role of Arabidopsis MYC and MYB homologs in drought-and abscisic acid- regulated gene expression. Plant cell. 9:1859-1868.

ABE, H., URAO, T., ITO, T., SEKI, M., SHINOZAKI, K. AND YAMAGUCHI-SHINOZAKI, K., 2003, Arabidopsis AtMYC2 (bHLH) and AtMYB2 (MYB) function as transcriptional activators in abscisic acid signaling. Plant Cell. 15: 63–78.

ABE, M., KOBAYASHI, Y., YAMAMOTO, S., DAIMON, Y., YAMAGUCHI, A., IKEDA, Y., ICHINOKI, H., NOTAGUCHI, M., GOTO, K. AND ARAKI, T., 2005, FD, a bZIP protein mediating signals from the floral pathway integrator FT at the shoot apex. Science. 309: 1052–1056.

AGARWAL, M., HAO, Y., KAPOOR, A., DONG. C . H., FUJI, H., ZHENG, X., ZHU, J. K., 2006, A R2R3 type MYB transcription factor is involved in the cold regulation of CBF genes and in acquired freezing tolerance. Journal of Biological

Chemistry. 281: 37636-37645.

AGARWAL, P. K. AND JHA, B., 2010, Transcription factors in plants and ABA dependent and independent abiotic stress signaling. Biol. Plantarum. 54: 201-212.

AGARWAL, P., AGARWAL, P. K., JOSHI, A. J., SOPORY, S. K. AND REDDY, M. K., 2010, Overexpression of PgDREB2A transcription factor enhances abiotic stress tolerance and activates downstream stress-responsive genes. Mol. Biol.

Rep. 37: 1125–1135.

AGARWAL, P., ARORA, R., RAY, S., SINGH, A. K., SINGH, V. P., TAKATSUJI, H., KAPOOR, S. AND ANDTYAGI, A. K., 2007, Genome-wide identification of C(2)H (2) zinc-finger gene family in rice and their phylogeny and expression analysis. Plant Mol. Biol. 65: 467–485.

AHARONI, A., DIXIT, S., JETTER, R., THOENES, E., ARKEL, G.V. AND PEREIRA, A., 2004, The SHINE clade of AP2 domain TFs activates wax biosynthesis, alters cuticle properties, and confers drought tolerance when overexpressed in Arabidopsis. Plant Cell. 16: 2463-2480.

AIDA, M., TISHID, A., FUKAKI, H., FUJISAWA, H. AND TASAKA, M., 1997, Genes involved in organ separation in Arabidopsis: an analysis of the cup-shaped cotyledon mutant. Plant Cell. 9: 841–857.

ALLEN, M. D., YAMASAKI, K., OHME-TAKAGI, M., TATENO, M. AND SUZUKI, M., 1998, A novel mode of DNA recognition by a β-sheet revealed by the solution structure of the GCC-box binding domain in complex with DNA. EMBO

J. 17: 5484–5496.

ALLEN, R. D., 1995, Dissection of oxidative stress-tolerance using transgenic plants. Plant Physiol. 107: 1049–1054.

ALVIM, F. C., CAROLINO, S. M. B., CASCARDO, J. C. M., NUNES, C. C., MARTINEZ, C. A., OTONI, W. C. AND FONTES, E. P. B., 2001, Enhanced

Accumulation of BiP in Transgenic Plants Confers Tolerance to Water. Plant

Physiol. 126: 1042–1054.

ANDERSON, J. P., BADRUZSAUFARI, E., SCHENK, P.M., MANNERS, J.M., DESMOND, O. J., EHLERT, C., MACLEAN, D. J., EBERT, P.R. AND KAZAN, K., 2004, Antagonistic interaction between abscisic acid and jasmonate-ethylene signaling pathways modulates defense gene expression and disease resistance in Arabidopsis. Plant Cell. 16: 3460–3479.

ANDREASSON, E., JENKINS, T., BRODERSEN, P., THORGRIMSEN, S., PETERSEN, N. H., ZHU, S., QIU, J. L., MICHEELSEN, P., ROCHER, A., PETERSEN, M., NEWMAN, M. A., BJORN NIELSEN, H., HIRT, H., SOMSSICH, I., MATTSSON, O. AND MUNDY, J., 2005, The MAP kinase substrate MKS1 is a regulator of plant defense responses. Embo J. 24: 2579-2589.

APEL, K. AND HIRT, H., 2004, Reactive oxygen species: metabolism, oxidative stress, and signal transduction. Annu. Rev. Plant Biol. 55: 373-399.

ARAKI, S., ITO, M., SOYANO, T., NISHIHAMA, R. AND MACHIDA, Y., 2004, Mitotic cyclins stimulate the activity of c-Myb-like factors for transactivation of G2/M phase-specific genes in tobacco. J. Biol. Chem.279: 32979–32988.

ARCHANA, K., RAMA, N., MAMRUTHA, H. M. AND NATARAJA, K. N., 2009, Down-regulation of an abiotic stress related Nicotiana benthamiana WRKY TF induces physiological abnormalities. Indian J. Biotechnol. 8: 53-60.

ARIEL, F. D., MANAVELLA, P. A., DEZAR, C. A. AND CHAN, R.L., 2007, The true story of the HD-Zip family. Trends Plant Sci. 12: 419–426.

ASHRAF, M. AND FOOLAD, M. R., 2007, Roles of glycinebetaine and proline in improving plant abiotic stress resistance. Environ. Exp. Bot. 59: 206-216.

ATCHLEY, W. R., THERHALLE, W. AND DRESS, A., 1999, Positional dependence, cliques and predictive motifs in the bHLH protein domain. J. Mol. Evol. 48, 501–516.

ATTALURI, S., 1998, Thermotolerant groundnut (Arachis hypogaea L.) genotypes identified based on temperature induction response (TIR) technique also exhibited enhanced expression of a few stress responsive proteins. M.Sc. thesis, University of Agricultural Sciences, Bangalore, India.

BABITHA, K. C., RAMU S. V., PRUTHVI V., MAHESH P., NATARAJA, K. N. AND UDAYAKUMAR M., 2012, Co-expression of AtbHLH17 and AtWRKY28 confers resistance to abiotic stress in Arabidopsis. Transgenic Res. doi. 10.1007/s11248-012-9645-8.

BADAWI, G. H., YAMAUCHI, Y., SHIMADA, E., SASAKI, R., KAWANO, N., TANAKA, K. AND TANAKA, K., 2004, Enhanced tolerance to salt stress and water deficit by overexpressing superoxide dismutase in tobacco (Nicotiana tabacum) chloroplasts. Plant Sci. 166: 919-928.

BAENA-GONZALEZ, E., ROLLAND, F., THEVELEIN, J. M. AND SHEEN, J., 2007, A central integrator of transcription networks in plant stress and energy signalling. Nature. 448: 938–943.

BAIMA, S., POSSENTI, M., MATTEUCCI, A., WISMAN, E., ALTAMURA, M. M., RUBERTI, I. AND MORELLI, G., 2001, The Arabidopsis ATHB-8 HD-Zip protein acts as differentiation-promoting transcription factor of the vascular meristem. Plant Physiol. 126: 643-55.

BANIWAL, S. K., BHARTI, K. Y., CHAN, M., FAUTH, A., GANGULI, S., KOTAK, S. K., MISHRA, L., NOVER, M., PORT, K. D., SCHARF, J., TRIPP, C., WEBER, D,. ZIELINSKI, P. AND VON KOSKULL- DORING, 2004, Heat stress response in plants: a complex game with chaperones and more than twenty heat stress transcription factors. J. Biosci. 29: 471–487.

BANIWAL, S.K., CHAN, K. Y., SCHARF, K. D. AND NOVER, L., 2007, Role of heat stress transcription factor HsfA5 as specific repressor of HsfA4. J. Biol.

Chem. 282: 3605–3613.

BANTI, V., MAFESSONI, F., LORETI, E., ALPI, A. AND PERATA, P., 2010, The heat-inducible transcription factor HsfA2 enhances anoxia tolerance in Arabidopsis, Plant Physiol. 152: 1471–1483.

BARTELS, D. AND SALAMINI, F., 2001, Desiccation tolerance in the resurrection plant Craterostigma plantagineum. A contribution to the study of drought tolerance at the molecular level. Plant Physiol. 127: 1346-1353.

BARTELS, D. AND SUNKAR, R,. 2005, Drought and salt tolerance in plants. Crit.

Rev. Plant Sci. 24: 23–48.

BARTELS, D., SCHNEIDER, K., TERSTAPPEN, G., PIATKOWSKI, D. AND SALAMINI, F., 1990, Molecular cloning of ABA-modulated genes from the resurrection plant Craterostigma plantagineum which are induced during desiccation. Planta. 181: 27–34.

BEHNAM, B., KIKUCHI, A., CELEBI-TOPRAK, F., YAMANAKA, S., KASUGA, M., YAMAGUCHI-SHINOZAKI, K. AND WATANABE, K. N., 2006, The Arabidopsis DREB1A gene driven by the stress-inducible rd29A promoter increases salt-stress tolerance in proportion to its copy number in tetrasomic tetraploid potato (Solanum tuberosum). Plant Biotechnol 23: 169–177.

BENGERT, P. AND DANDEKAR, T., 2003, A software tool-box for analysis of regulatory RNA elements. Nucl. Acids. Res. 3: 3441-3445.

BEWLEY, J. D. AND KROCHKO, J. E., 1982, Desiccation tolerance. In: Lange OL, Nobel PS, Osmond CB, Ziegler H, eds. Encyclopedia of plant physiology, New series, Vol.12B. Physiological plant ecology II. Berlin: SpringerVerlag, pp: 325–378.

BHARTI, K.,VON KOSKULL-DORING, P., BHARTI, S., KUMAR, P., TINTSCHL-KORBITZER, A., TREUTER, E. AND NOVER L., 2004, Tomato heat stress transcription factor HsfB1 represents a novel type of general transcription coactivator with a histone-like motif interacting with the plant CREB binding protein ortholog HAC1, Plant Cell. 16: 1521–1535.

BHATNAGAR-MATHUR, P., DEVI, M. J., REDDY, D. S., VADEZ, V., YAMAGUCHI- SHINOZAKI, K. AND SHARMA, K. K,. 2006, Over-expression of Arabidopsis thaliana DREB1A in transgenic peanut (Arachis hypogaea L.) for improving tolerance to drought stress (poster presentation). In:

Sackler AM, ed. 2006 Colloquia on ‘From functional genomics of model organisms to crop plants for global health’. Washington: DC. National Academy

of Sciences. pp: 3–5.

BIANCHI, G., GAMBA, A., LIMIROLI, R., POZZI, N., ELSTER, R., SALAMINI, F. AND BARTELS, D., 1993, The unusual sugar composition in leaves of the resurrection plant Myrothamnus flabellifolia. Physiol. Plantarum. 87: 223–226.

BIENZ, M. AND PELHAM, H. R., 1987, Mechanisms of heat-shock gene activation in higher eukaryotes. Adv Genet. 24 : 31-72.

BIZILY, S. P., RUGH, C. L. AND MEAGHER, R. B., 2000, Phytodetoxification of hazardous organomercurials by genetically engineered plants. Nat. Biotechnol. 18: 213–217.

BLACK, M. AND PRITCHARD, H. W., 2002, Desiccation and Survival in Plants: Drying without Dying. Wallingford, UK: CABI.

BOERJAN, W., CERVERA, M., DELARUE, M., BEECKMAN, T., DEWITTE, W., BELLINI, C., CABOCHE, M., VAN ONCKELEN, H., VAN MONTAGU, M. AND INZÉ, D., 1995, Superroot, a recessive mutation in Arabidopsis, confers auxin overproduction. Plant Cell. 7: 1405–1419.

BURDA, P. AND AEBI, M., 1999, The dolichol pathway of N-linked glycosylation.

Biochim Biophys Acta. 1426(2): 239-57.

BUSCH, W., WUNDERLICH, M. AND SCHOFFL, F., 2005, Identification of novel heat shock factor- dependent genes and biochemical pathways in Arabidopsis thaliana. Plant J. 41: 1–14.

CABUSLAY, G. S., ITO, O. AND ALEJAR, A. A., 2002, Physiological evaluation of responses of rice (Oryza sativa L.) to water deficit. Plant Science. 163: 815-/827.

CAO, J., ZHAO, J. Z., TANG, J .D., SHELTON, A. M. AND EARLE, E. D., 2002, Broccoli plants with pyramided cry1Ac and cry1C Bt genes control diamondback moths resistant to Cry1A and Cry1C proteins. Theor. Appl. Genet. 105: 258–264.

CASARETTO, J. AND HO T. D., 2003, The transcription factors HvABI5 andHvVP1 are required for the abscisic acid induction of gene expression in barley aleurone cells. Plant Cell. 15: 271–284.

CASTIGLIONI, P., WARNER, D., BENSEN, R. J., ANSTROM, D. C., HARRISON, J., STOECKER, M., ABAD, M., KUMAR, G., SALVADOR, S., D'ORDINE, R., NAVARRO, S., BACK, S., FERNANDES, M., TARGOLLI, J., DASGUPTA, S., BONIN C., LUETHY M. H. AND HEARD, J. E., 2008, Bacterial RNA Chaperones Confer Abiotic Stress Tolerance in Plants and Improved Grain Yield in Maize under Water-Limited Conditions. Plant Physiol. 147: 446-455.

CHAN, R.L., GAGO, G.M., PALENA, C.M. AND GONZALEZ, D.H., 1998, Homeoboxes in plant development. Biochim Biophys Acta. 1442, 1–19.

CHANDLER, P.M., MARION-POLL, A., ELLIS, M. AND GUBLER, F., 2002, Mutants at the Slender1 locus of barley cv Himalaya: Molecular and physiological characterization. Plant Physiol. 129: 181–190.

CHEN, H., CHEN, W., ZHOU, J., HE, H., CHEN, L. AND CHEN, H., 2012, Basic leucine zipper transcription factor OsbZIP16 positively regulates drought resistance in rice. Plant Sci. 193-194: 8-17.

CHEN, J., XIA, X. AND YIN, W., 2009, Expression profiling and functional characterization of a DREB2-type gene from Populus euphratica. Biochem.

Biophys. Res. Comm. 378: 483–487.

CHEN, J.Q., MENG, X.P., ZHANG, Y., XIA, M. AND WANG, X.P., 2008, Overexpression of OsDREB genes lead to enhanced drought tolerance in rice. Biotechnol. Lett. 30: 2191–2198.

CHEN, L.L., MARMEY, P., TAYLOR, N. J., BRIZARD, J.P., ESPINOZA, C., D’CRUZ, P., HUET, H., ZHANG, S.P., DE KOCHKO, A., BEACHY, R.N. AND FAUQUET, C.M., 1998, Expression and inheritance of multiple transgenes in rice plants. Nat. Biotechnol. 16: 1060–1064.

CHEN, Q., WANG, Q., XIONG, L. AND LOU. Z., 2011, A structural view of the conserved domain of rice stress-responsive NaC1. Protein Cell. 2: 55–63.

CHEN, Q.J., ZHOU, H.M., CHEN, J. AND WANG, X.C., 2006, A Gateway-based platform for multigene plant transformation. Plant Mol Biol. 62: 927–936

CHEN, W.W., YANG, J.L., QIN, C., JIN, C.W., MO, J.H., YE, T. AND ZHENG, S., 2010, Nitric oxide acts downstream of auxin to trigger root ferric-chelate reductase activity in response to iron deficiency in Arabidopsis. Plant Physiol. 154: 810–819

CHEN, Z., HONG, X., ZHANG, H., WANG, Y., LI, X., ZHU, J.K. AND GONG, Z., 2005, Disruption of the cellulose synthase gene, AtCesA8/IRX1, enhances drought and osmotic stress tolerance in Arabidopsis. Plant J. 43: 273–283.

CHENG, Z., TARGOLLI, J., HUANG, X. AND WU, R., 1959, Wheat LEA genes, PMA80 and PMA enhance dehydration tolerance of transgenic rice (Oryza sativa

L.). Mol. Breeding. 10:71-82.

CHEONG, Y.H., CHANG, H.S., GUPTA, R., WANG, X., ZHU, T., LUAN., 2002, Transcriptional profiling reveals novel interactions between wounding, pathogen, abiotic stress, and hormonal responses in Arabidopsis. Plant Physiology. 129: 661–677.

CHILD, G.F., 1960, Brief notes on the ecology of the resurrection plant (Myrothamnus

flabellifolia) with mention of its water-absorbing abilities. Journal of South

African Botany.XXVI:1–8.

CHINNUSAMY, V., OHTA, M., KANRAR, S., LEE, B.H., HONG, X., AGARWAL, M. AND ZHU, J.K., 2003, ICE: A regulator of cold-induced transcriptome and freezing tolerance in Arabidopsis. Genes Dev. 17: 1043–1054.

CHINNUSWAMY, V., KAREN SCHUMAKER. AND JIAN-KANG ZHU. 2003, Molecular genetic perspectives on cross-talk and speci®city in abiotic stress signalling in plants. Journal of Experimental Botany. Vol. 55, No. 395: 225-236.

CHRISTENSEN, A., SVENSSON, K., PERSSON, S., JUNG, J., MICHALAK, M., WIDELL, S. AND SOMMARIN, M., 2008, Functional characterization of

Arabidopsis calreticulin1a: a key alleviator of endoplasmic reticulum stress. Plant Cell Physiol. 49(6):912-24.

CHUANG, C.F., RUNNING, M.P., WILLIAMS, R.W. AND MEYEROWITZ, E., 1999, The PERIANTHIA gene encodes a bZIP protein involved in the determination of floral organ number in Arabidopsis thaliana. Genes Dev. 13: 334–344.

CIFTCI-YILMAZ, S., MORSY, M.R., SONG, L., COUTU, A., KRIZEK, B.A., LEWIS, M.W., WARREN, D., CUSHMAN, J., CONNOLLY, E.L. AND MITTLER, R., 2007, The EAR-motif of the Cys2/His2-type zinc finger protein Zat7 plays a key role in the defense response of Arabidopsis to salinity stress. Journal of

Biological Chemistry. 282: 9260–9268.

CIFTCI-YILMAZA, S. AND MITTLERA, R., 2008, The zinc finger network of plants. Cell. Mol. Life Sci. 65: 1150 – 1160

CLARK, L.J., PRICE, A.H., STEELE, K.A. AND WHALLEY, W.R., 2008. Evidence from near-isogenic lines that root penetration increases with root diameter and bending stiffness in rice. Funct. Plant Biol. 35: 1163–1171.

CLARKE, S., 2003, Aging as war between chemical and biochemical processes: Protein methylation and the recognition of age-damaged proteins for repair. Ageing Res.

Rev. 2: 263–285.

CLOUGH, S.J. AND BENT, A.F., 1998, Floral dip: a simplified method for Agrobacterium-mediated transformation of Arabidopsis thaliana. Plant J. 16:735-743

COHEN, A. AND BRAY, E.A., 1990, Characterization of three mRNAs that accumulate in wilted tomato leaves in response to elevated levels of endogenous abscisic acid. Planta. 182: 27–33

COLLINGE, M. AND BOLLER, T., 2001, Differential induction of two potato genes, Stprx2 and StNAC, in response to infection by Phytophthora infestans and to wounding. Plant Mol. Biol. 46:521-529.

COMINELLI, E., GALBIATI, M., VAVASSEUR, A., CONTI, L., SALA, T., VUYLSTEKE, M., LEONHARDT, N., DELLAPORTA, S.L. AND TONELLI, C., 2005, A guard-cell-specific MYB transcription factor regulates stomatal movements and plant drought tolerance. Current Biol. 15: 1196–1200.

COMINELLI, E., SALA, T., CALVI, D., GUSMAROLI, G. AND TONELLI, C., 2008, Overexpression of the Arabidopsis AtMYB41 gene alters cell expansion and leaf surface permeability. Plant J. 53: 53–64.

COSIO, C., MARTINOIA, E. AND KELLER, C., 2004, Hyper accumulation of cadmium and Zinc in Thlaspi caerulescens and Arabidopsis halleri at the leaf cellular level. Plant Physiol. 134:1-10.

CUMING, A. C., 1999, LEA proteins. In Seed Proteins (Shewry, P. R. and Casey, R., eds.), pp. 753–780, Kluwer Academic Publishers, Dordrecht

CURTIS, M.D. AND GROSSNIKLAUS, U., 2003, A Gateway cloning vector set for high- throughput functional analysis of genes in planta. Plant Physiol. 133: 462–469.

DAI, X., XU, Y., MA, Q., XU, W., WANG, T., XUE, Y. AND CHONG, K., 2007, Overexpression of an R1R2R3 MYB gene, OsMYB3R-2, increases tolerance to freezing, drought, and salt stress in transgenic Arabidopsis. Plant Physiol. 143: 1739-1751.

DANIELL, H. AND DHINGRA, A., 2002, Multigene engineering: dawn of an exciting new era in biotechnology. Curr. Opin. Biotechnol. 13: 136–141.

DATTA, K., 2002, Pyramiding transgenes for multiple resistance in rice against bacterial blight, yellow stem borer and sheath blight. Theor. Appl. Genet. 106: 1–8

DATTA, K., SCHMIDT, A. AND MARCUS, A., 1989, Characterization of two soybean repetitive proline-rich proteins and a cognate cdna from geminated axes. Plant

Cell. 1:945-952

DAVLETOVA, S. L., RIZHSKY, H., LIANG, Z., SHENGQIANG, D.J., OLIVER, J., COUTU, V., SHULAEV, K. AND MITTLER, S. R., 2005, Cytosolic ascorbate peroxidase 1 is a central component of the reactive oxygen gene network of Arabidopsis, Plant Cell. 17: 268–281.

DAVLETOVA, S., SCHLAUCH, K., COUTU, J. AND MITTLER, R., 2005, The zinc-finger protein Zat12 plays a central role in reactive oxygen and abiotic stress signaling in Arabidopsis. Plant Physiol. 139: 847–856.

DAYAN, J., VORONIN, N., GONG, F., SUN, T-P., HEDDEN, P., FROMM, H. AND ALONI, R., 2012, Leaf-Induced Gibberellin Signaling is Essential for Internode Elongation, Cambial Activity, and Fiber Differentiation in Tobacco Stems. Plant

Cell. 24:1. 66-79.

DE BRUXELLES, G.L., PEACOCK, W.J., DENNIS, E.S. AND DOLFERUS, R., 1996, Abscisic acid induces the alcohol dehydrogenase gene in Arabidopsis. Plant Physiol. 111:381–391.

DE CAESTECKER, M.P., YAHATA, T., WANG, D., PARKS, W.T., HUANG, S., HILLI, C.S., SHIODA, T., ROBERTS, A.B. AND LECHLEIDER, R.J., 2000, The Smad 4 activation domain (SAD) is a proline-rich, p300-dependent transcriptional activation domain. J Biol Chem. 3:2115-22.

DE LUCAS, M., DAVIÈRE, J.M., RODRÍGUEZ-FALCÓN, M., PONTIN, M., IGLESIAS-PEDRAZ, J.M., LORRAIN, S., FANKHAUSER, C., BLÁZQUEZ, M.A., TITARENKO, E. AND PRAT, S., 2008, A molecular framework for light and gibberellin control of cell elongation. Nature. 451: 480–484.

DEMIRAL, T. AND TURKAN, I., 2004, Does exogenous glycinebetaine affect antioxidative system of rice seedlings under NaCl treatment? J. Plant Physiol. 161: 1089-1110.

DENEKAMP, M. AND SMEEKENS, S.C., 2003, Integration of wounding and osmotic stress signals determines the expression of the AtMYB102 transcription factor gene. Plant Physiol. 132: 1415–1423.

DENG, Y., HUMBERT, S., LIU, J.X., SRIVASTAVA, R., ROTHSTEIN, S.J. AND HOWELL, S.H., 2011, Heat induces the splicing by IRE1 of a mRNA encoding

a transcription factor involved in the unfolded protein response in Arabidopsis.

Proc. Natl Acad. Sci. USA. 108: 7247–7252.

DEVARSHI, S.S., BHARTI, S. AND KHANNA-CHOPRA, R., 2004, Drought acclimation reduces O2

-. accumulation and lipid peroxidation in wheat seedlings. Biochem. Biophys. Res. Commun. 314: 724–729.

DEZAR, C.A., GAGO, G.M., GONZALEZ, D.H. AND CHAN, R.L., 2005, Hahb-4, a sunflower homeobox-leucine zipper gene, is a developmental regulator and confers drought tolerance to Arabidopsis thaliana plants. Transgenic Res. 14:429–440.

DILL, A. AND SUN, T., 2001, Synergistic derepression of gibberellin signaling by removing RGA and GAI function in Arabidopsis thaliana. Genetics. 159: 777–785.

DING, Z., LI, S., AN, X., LIU, X., QIN, H. AND WANG, D., 2009, Transgenic expression of MYB15 confers enhanced sensitivity to abscisic acid and improved drought tolerance in Arabidopsis thaliana. J Genetics Genomics. 36: 17–29.

DOLFERUS, R., JACOBS, M., PEACOCK, W.J. AND DENNIS, E.S., 1994, Differential interactions of promoter elements in stress responses of the Arabidopsis Adh gene. Plant Physiol. 105:1075-1087.

DONG, C., DANYLUK, J., WILSON, K.E., POCOCK, T., HUNER N. P. A. AND SARHAN. F., 2002, Cold-regulated cereal chloroplast late embryogenesis abundant- like proteins. Molecular characterization and functional analysis. Plant

Physiol. 129:1368-1381.

DOYLE, J. J. AND DOYLE, J. L., 1989, Isolation of plant DNA from plant fresh tissue. BRL Focus. 12: 13-14.

DUBOUZET, J.G., SAKUMA, Y., ITO, Y., KASUGA, M., DUBOUZET, E.G., MIURA, S., SEKI, M., SHINOZAKI, K. AND YAMAGUCHI-SHINOZAKI, K., 2003, OsDREB genes in rice, Oryza sativa L., encode transcription activators that function in drought-, high-salt-, and cold-responsive gene expression. Plant

J. 33: 751–763.

DUVAL, M., HSIEH, T.F., KIM, S.Y. AND THOMAS, T.L., 2002, Molecular characterization of AtNAM: A member of the Arabidopsis NAC domain superfamily. Plant Mol Biol. 50: 237-48.

EBBESEN, T. W., LEVEY, G. AND PATTERSON, L. K., 1982, Photoreduction of methyl viologen in aqueous neutral solution without additives. Nature. 298: 545-548.

EKANAYAKE, I., DE DATTA, S. AND STEPONKUS, P., 1989, Spikelet sterility and flowering response of rice to water stress at anthesis. Ann. Bot. 63: 257–264.

EL AMRANI, A., BARAKATE, A., ASKARI, B.M., LI, X.J., ROBERTS, A.G., RYAN, M.D. AND HALPIN, C., 2004, Coordinate expression and independent subcellular targeting of multiple proteins from a single transgene. Plant Physiol. 135: 16–24.

ELLENBERGER, T.E., BRANDL, C.J., STRUHL, K. AND HARRISON, S.C., 1992, The GCN4 basic region leucine zipper binds DNA as a dimer of uninterrupted alpha helices: crystal structure of the protein-DNA complex. Cell. 71: 1223–1237.

ENGLBRECHT, C. C., SCHOOF, H. AND BOHM, S., 2004, Conservation, diversification and expansion of C2H2 zinc finger proteins in the Arabidopsis thaliana genome. BMC Genomics. 5: 39.

ERNST, H.A., OLSEN, A.N., LARSEN, S. AND LO LEGGIO, L., 2004, Structure of the conserved domain of ANAC, a member of the NAC family of transcription factors. EMBO Rep. 5: 297-303.

EULGEM, T., RUSHTON, P., ROBATZEK, S. AND SOMSSICH., 2000, The WRKY superfamily of plant transcription factors. Trends Plant Sci. 5(5): 199-206.

FANG, Y., YOU, J., XIE, K., XIE, W. AND XIONG, L., 2008, Systematic sequence analysis and identification of tissue-specific or stress-responsive genes of NAC transcription factor family in rice. Mol. Genet. Genomics. 280: 547-563.

FERNÁNDEZ, P., PANIEGO, N., LEW, S., HOPP, H. E. AND HEINZ, R. A., 2003, Differential representation of sunflower ESTs in enriched organ-specific cDNA libraries in a small scale sequencing project. BMC Genomics. 4:1-9.

FINKELSTEIN, R.R. AND LYNCH, T.J., 2000, Abscisic acid inhibition of radicle emergence but not seedling growth is suppressed by sugars. Plant Physiol. 122: 1179–1186.

FOWLER, S. AND THOMASHOW, M.F., 2002, Arabidopsis transcriptome profiling indicates that multiple regulatory pathways are activated during cold acclimation in addition to the CBF cold response pathway. Plant Cell. 14: 1675–1690.

FUJIMOTO, S.Y., M. OHTA, A., USUI, H., SHINSHI, M. AND OHME-TAKAGI, 2000, Arabidopsis ethylene-responsive element binding factors act as transcriptional activators or repressors of GCC box-mediated gene expression. Plant Cell. 12: 393–404.

FUJITA, M., MIZUKADO, S., FUJITA, Y., ICHIKAWA, T., NAKAZAWA, M., SEKI, M., MATSUI, M., YAMAGUCH –SHINOZAKI, K. AND SHINOZAKI, K., 2007, Identification of stress-tolerance-related transcription-factor genes via mini-scale full length cDNA over-eXpressor (FOX) gene hunting system. Biochem. Biophys. Res. Commu. 364: 250-257.

FUKAO, T. AND BAILEY-SERRES, J. 2008, Submergence tolerance conferred by Sub1A is mediated by SLR1 and SLRL1 restriction of gibberellins responses in rice. Proc. Natl. Acad. Sci. USA. 105: 16814–16819.

FUKAO, T., YEUNG, E. AND BAILEY-SERRES, J., 2011, The Submergence Tolerance Regulator SUB1A Mediates Crosstalk between Submergence and Drought Tolerance in Rice. Plant Cell. 23:412–427

FUKAZAWA, J., SAKAI, T., ISHIDA, S., YAMAGUCHI, I. AND KAMIYA, Y., 2000, Repression of shoot growth, a bZIP transcriptional activator, regulates cell elongation by controlling the level of gibberellins. Plant Cell. 12: 901–915.

GAGO, G.M., ALMOGUERA, C., JORDANO, J., GONZALEZ, D.H. AND CHAN, R.L., 2002, Hahb-4, a homeobox-leucine zipper gene potentially involved in abscisic acid-dependent responses to water stress in sunflower. Plant Cell

Environm. 25: 633-40.

GAO, H., BRANDIZZI, F., BENNING, C. AND LARKIN. R. M., 2008, A membrane-tethered transcription factor defines a branch of the heat stress response in Arabidopsis thaliana. PNAS. 105(42): 16399–16404.

GAO, S. Q., CHEN, M., XU, Z. S., ZHAO, C. P., LI, L., XU, H. J., TANG, Y. M., ZHAO, X. AND MA Y. Z., 2011, The soybean GmbZIP1 transcription factor enhances multiple abiotic stress tolerances in transgenic plants. Plant Mol Biol. 6: 537-53.

GARAY-ARROYO, A., COLMENERO-FLORES, J. M., GARCIARRUBIO, A. AND COVARRUBIAS, A. A., 2000, Highly hydrophilic proteins in prokaryotes and eukaryotes are common during conditions of water deficit. J. Biol. Chem. 275: 5668-5674.

GARG, N. G. AND MANCHANDA., 2009, ROS generation in plants: boon or bane? Plant Biosys. 143: 8-96.

GAY, C., COLLINS, J. AND GEBICKI, J. M., 1999, Hydroperoxide assay with the ferric- xylenol orange complex Analytical Biochem. 273(2): 149–155.

GE, L., CHEN, H., JIANG, J-F., ZHAO, Y., XU, M-L., XU, Y-Y., TAN, K-H., XU, Z-H. AND CHONG, K., 2004, Overexpression of OsRAA1 Causes Pleiotropic Phenotypes in Transgenic Rice Plants, including Altered Leaf, Flower, and Root Development and Root Response to Gravity. Plant Physiol. 135(3): 1502–1513.

GILMOUR, S.J., SEBOLT, A.M., SALAZAR, M.P., EVERARD, J.D. AND THOMASHOW, M.F., 2000. Overexpression of Arabidopsis CBF3 transcriptional activator mimics multiple biochemical changes associated with cold acclimation. Plant Physiol. 124: 1854–1865.

GOMI, K., SASAKI, A., ITOH, H., UEGUCHI-TANAKA, M., ASHIKARI, M., KITANO, H. AND MATSUOKA, M., 2004, GID2, an F-box subunit of the SCF E3 complex, specifically interacts with phosphorylated SLR1 protein and regulates the gibberellin-dependent degradation of SLR1 in rice. Plant J. 37: 626–634.

GOVIND, G., HARSHAVARDHAN, V.T., PATRICIA, J.K., DHANALAKSHMI, R., SENTHIL-KUMAR, M., SREENIVASULU, N. AND UDAYAKUMAR, M., 2009, Identification and functional validation of a unique set of drought induced genes preferentially expressed in response to gradual water stress in peanut. Mol.

Genet. Genomics. 281: 591-605.

GOWDA, V. R. P., HENRY, A., YAMAUCHI, A., SHASHIDHAR, H. E. AND SERRAJ, R., 2011, Root biology and genetic improvement for drought avoidance in rice. Field Crops Res. 122: 1–13.

GOWRI NEELIMA, M., RAMU, S. V., SREEVTHSA, R., ASHA RANI, B. M., KUMAR, A. R. V. AND GAYATHRI, M. C. 2008, In planta transformation strategy to generate transgenic plants in chick pea: proof of concept with a cry gene. J. Plant Biol. 35(3): 201-206.

GRANIER, C., 2006, PHENOPSIS, an automated platform for reproducible phenotyping of plant responses to soil water deficit in Arabidopsis thaliana permitted the identification of an accession with low sensitivity to soil water deficit. New Phytol. 169: 623–635.

GRAY, G. R. AND HEATH, D., 2005, A global reorganization of the metabolome in Arabidopsis during cold acclimation is revealed by metabolic fingerprinting. Physiol. Plant. 124: 236–248.

GREENBOIM-WAINBERG, Y., MAYMON, I., BOROCHOV, R., ALVAREZ, J., OLSZEWSKI, N., ORI, N., ESHED, Y. AND WEISS, D., 2005, Cross talk between gibberellin and cytokinin: the Arabidopsis GA-response inhibitor SPINDLY plays a positive role in cytokinin signaling. Plant Cell. 17: 92–102.

GREVE, K., LA COUR, T., JENSEN, M.K., POULSEN, F.M. AND SKRIVER, K., 2003, Interactions between plant RING-H2 and plant-specific NAC (NAM/ATAF1/2/CUC2) proteins: RING-H2 molecular specificity and cellular localization. Biochem. J. 371: 97-108.

GRIFFITHS, J., MURASE, K., RIEU, I., ZENTELLA, R., ZHANG, Z. L., POWERS, S. J., GONG, F., PHILLIPS, A. L., HEDDEN, P., SUN, T. P. AND THOMAS, S. G., 2006, Genetic characterization and functional analysis of the GID1 gibberellin receptors in Arabidopsis. Plant Cell. 18: 3399–3414.

GRUBER, C. W., CEMAZAR, M., MECHLER, A., MARTIN, L. L. AND CRAIK, D. J., 2009, Biochemical and biophysical characterization of a novel plant protein disulfide isomerase. Biopolymers. 92: 35‑43.

GUTIERREZ, L., VAN WUYTSWINKEL, O., CASTELAIN, M. AND BELLINI, C., 2007, Combined networks regulating seed maturation. Trends Plant Sci. 12: 294–300.

HAAKE, V., COOK, D., RIECHMANN, J.L., PINEDA, O., THOMASHOW, M.F. AND ZHANG, J.Z., 2002, Transcription factor CBF4 is a regulator of drought adaptation in Arabidopsis. Plant Physiol. 130: 639–648.

HAHN, A.D., BUBLAK, E., SCHLEIFF, K.D. AND SCHARF, 2011, Crosstalk between Hsp90 and Hsp70 chaperones and heat stress transcription factors in tomato. Plant Cell. 23:741–755.

HAHN, G.M. AND LI, G.C., 1990, Thermo-tolerance, thermo-resistance and thermo-sensitization. In: Morimoto RI, Tissieres A, Georgopoulos C, editors. Stress proteins in biology and medicine. Cold Spring Harbor, New York: Cold Spring

Harbor Press. p. 79–100.

HALPIN, C., 2005, Gene stacking in transgenic plants – the challenge for 21st century plant biotechnology. Plant Biotechnol. J. 3: 141–155.

HALPIN, C., BARAKATE, A., ASKARI, B.M., ABBOTT, J.C. AND RYAN, M.D., 2001, Enabling technologies for manipulating multiple genes on complex pathways. Plant Mol. Biol. 4: 295–310.

HARA, M., TERASHIMA, S., FUKAYA, T. AND KUBOI, T., 2003, Enhancement of cold tolerance and inhibition of lipid peroxidation by citrus dehydrin in transgenic tobacco. Planta. 217: 290-298.

HARE, P.D. AND CRESS, W.A., 1997, Metabolic implications of stress-induced proline accumulation in plants. Plant Growth Regul. 21: 79–102

HARRIS, J.C., HRMOVA, M., LOPATO, S. AND LANGRIDGE, P., 2011, Modulation of plant growth by HD-Zip class I and II transcription factors in response to environmental stimuli. New Phytol. 190: 823–837.

HE, X.J., MU, R.L., CAO, W.H., ZHANG, Z.G., ZHANG, J.S. AND CHEN, S.Y., 2005, AtNAC2, a transcription factor downstream of ethylene and auxin signaling pathways, is involved in salt stress response and lateral root development. Plant J. 44: 903-16.

HEGEDUS, D., YU, M., BALDWIN, D., GRUBER, M., SHARPE, A., PARKIN, I., WHITWILL, S. AND LYDIATE, D., 2003, Molecular characterization of Brassica napus NAC domain transcriptional activators induced in response to biotic and abiotic stress. Plant Mol Biol. 53: 383–397.

HEIM, M.A., JACOBY, M., WERBER, M., MARTIN, C., WEISSHAAR, B. AND BAILEY, P.C., 2003, The basic helix-loop-helix transcription factor family in plants: A genome-wide study of protein structure and functional diversity. Mol.

Biol. Evol. 20: 735-747

HENRIKSSON, E., OLSSON, A.S.B., JOHANNESSON, H., JOHANSSON, H., HANSON, J., ENGSTROM, P. AND SODERMAN, E., 2005, Homeodomain leucine zipper class I genes in Arabidopsis. Expression patterns and phylogenetic relationships. Plant Physiol. 139: 509–518.

HIGGINSON, T., LI, S.F. AND PARISH, R.W., 2003, AtMYB103 regulates tapetum and trichome development in Arabidopsis thaliana. Plant J. 35: 177–192.

HIMMELBACH, A., HOFFMANN, T., LEUBE, M., HOHENER, B. AND GRILL, E., 2002, Homeodomain protein ATHB6 is a target of the protein phosphatase ABI1 and regulates hormone responses in Arabidopsis. EMBO J. 21: 3029–3038.

HINDERHOFER, K. AND ZENTGRAF, U., 2001, Identification of a transcription factor specifically expressed at the onset of leaf senescence. Planta. 213(3): 469-473.

HIRAYAMA, T. AND SHINOZAKI, K., 2007, Perception and transduction of abscisic acid signals: keys to the function of the versatile plant hormone ABA. Trends

Plant Sci. 12: 343–351.

HISCOX, J. D. AND ISRAELSTAM, G. F., 1979, A method for the extraction of chlorophyll from leaf tissue without maceration. Canadian J. Bot. 57: 1332-1334.

HOBO, T., KOWYAMA, Y. AND HATTORI, T., 1999, A bZIP factor, TRAB1, interacts with VP1 and mediates abscisic acid-induced transcription. Proc Natl

Acad Sci USA. 96:15348–15353.

HOLM, M., MA, L.G., QU, L.J. AND DENG, X.W., 2002, Two interacting bZIP proteins are direct targets of COP1-mediated control of light-dependent gene expression in Arabidopsis. Genes Dev. 16: 1247–1259.

HONG, J.K., CHOI, H.W., HWANG, I.S., KIM, D.S., KIM, N.H., CHOI, DU, S., KIM, Y.J. AND HWANG, B.K., 2008, Function of a novel GDSL-type pepper lipase

gene, CaGLIP1, in disease susceptibility and abiotic stress tolerance. Planta. 227: 539-558.

HOOD, E. E., GELVIN, S. B., MELCHERS, L. S. AND HOEKEMA, A., 1993, New Agrobacterium helper plasmids for gene transfer to plants. Transgenic Res. 2: 208-218.

HOSSAIN, M. A., LEE, Y., CHO, J-I., AHN, C-H., LEE, S-K., JEON, J-S., KANG, H., LEE, C-H., AN, G. AND PARK, P. B., 2010, The bZIP transcription factor OsABF1 is an ABA responsive element binding factor that enhances abiotic stress signalling in rice. Plant Mol Biol. 72: 557–566.

HOWARTH, C. J., POLLOCK, C. J. AND PEACOCK, J. M., 1997, Development of laboratory-based methods for assessing seedling thermotolerance in pearl millet. New Phytol. 137: 129–139.

HSIEH, T.H., LEE, J.T., YANG, P.T., CHIU, L.H., CHARNG, Y.Y., WANG, Y.C. AND CHAN, M.T., 2002, Heterology expression of the Arabidopsis C-repeat/dehydration response element binding factor 1 gene confers elevated tolerance to chilling and oxidative stresses in transgenic tomato. Plant Physiol. 129: 1086–1094.

HSIEH, T.H., LEE, J.T., YANG, P.T., CHIU, L.H., CHARNG, Y.Y., WANG, Y.C. AND CHAN, M.T., 2002a, Heterology expression of the Arabidopsis C-repeat/dehydration response element binding factor 1 gene confers elevated tolerance to chilling and oxidative stresses in transgenic tomato. Plant Physiol. 129: 1086–1094.

HU, H., DAI, M., YAO, J., XIAO, B., LI, X., ZHANG, Q. AND XIONG, L., 2006, Overexpressing a NAM, ATAF, and CUC (NAC) transcription factor enhances drought resistance and salt tolerance in rice. Proc Natl Acad Sci U S A. 103: 12987–12992.

HU, H., YOU, J., FANG, Y., ZHU, X., QI, Z. AND XIONG, L., 2008, Characterization of transcription factor gene SNAC2 conferring cold and salt tolerance in rice. Plant Mol. Biol. 67: 169-181.

HUQ, E. AND QUAIL, P.H., 2002, PIF4, a phytochrome-interacting bHLH factor, functions as a negative regulator of phytochrome B signaling in Arabidopsis. EMBO J. 21: 2441-2450.

HURST, H.C., 1994, Transcription factors 1. bZIP proteins. Protein Profile. 1: 123–168.

IKEDA, M., MITSUDA, N. AND OHME-TAKAGI, M., 2011, Arabidopsis HsfB1 and HsfB2b act as repressors of the expression of heat-inducible Hsfs but positively regulate the acquired thermotolerance. Plant Physiol.157: 1243-1254.

INGRAM, J., CHANDLER, J.W., GALLAGHER, L., SALAMINI, F. AND BARTELS, D., 1997, Analysis of cDNA clones encoding sucrose-phosphate synthase in relation to sugar interconversions associated with dehydration in the resurrection plant Craterostigma plantagineum Hochst. Plant Physiol. 115: 113-121.

INGRAM, K. T., BUENO, F. D., NAMUCO, O. S., YAMBAO, E. B. AND BEYROUTY, C. A., 1994, Rice root traits for drought resistance and their

genetic variation. In: Kirk, G.J.D. (Ed.), Rice Roots: Nutrient and Water Use. International Rice Research Institute, Manila, Philippines.

IWATA, Y. AND KOIZUMI, N., 2005, An Arabidopsis transcription factor, AtbZIP60, regulates the endoplasmic reticulum stress response in a manner unique to plants. Proc Natl Acad Sci U S A. 102: 5280–5285.

IWATA, Y., FEDOROFF, N.V. AND KOIZUMI, N., 2008, Arabidopsis bZIP60 is a proteolysis-activated transcription factor involved in the endoplasmic reticulum stress response. Plant Cell. 20: 3107-3121.

JABS, T., DIETRICH, R. A. AND DANGL, J. L., 1996, Initiation of runaway cell death in an Arabidopsis mutant by extracellular superoxide. Science. 273: 1853-1856

JAGLO-OTTOSEN, K.R., GILMOUR, S.J., ZARKA, D.G., SCHABENBERGER, O. AND THOMASHOW, M.F., 1998, Arabidopsis CBF1 overexpression induces cor genes and enhances freezing tolerance. Science. 280: 104–106.

JAIN, D., ROY, N. AND CHATTOPADHYAY, D., 2009, CaZF, a plant transcription factor functions through and parallel to HOG and calcineurin pathways in Saccharomyces cerevisiae to provide osmotolerance. PLoS One. 4: e5154.

JAKOBY, M., WEISSHAAR, B., DRÖGE-LASER, W., VICENTE-CARBAJOSA, J., TIEDEMANN, J., KROJ, T. AND PARCY, F., 2002, bZIP transcription factors in Arabidopsis. Trends Plant Sci. 7: 106-111.

JEFFERSON, R.A., KAVANAGH, T.A. AND BEVAN, M.W., 1987, GUS fusions: beta-glucuronidase as a sensitive and versatile gene fusion marker in higher plants. EMBO J. 6: 3901-3907.

JEONG, J. S., KIM, Y. S., BAEK, K. H., JUNG, H., HA, S. H., DO CHOI, Y., KIM, M., REUZEAU, C. AND KIM, J. K., 2010, Root-specific expression of OsNAC10 improves drought tolerance and grain yield in rice under field drought conditions. Plant Physiol. 153: 185–197.

JIANG, C. IU, B. AND SINGH, J., 1996, Requirement of a CCGAC cis-acting element for cold induction of the BN115 gene from winter Brassica napus. Plant Mol.

Biol. 30: 679–684.

JIANG, Y. AND DEYHOLOS, M. 2009, Functional characterization of Arabidopsis NaCl-inducible WRKY25 and WRKY33 transcription factors in abiotic stresses. Plant Mol. Biol. 69: 91–105.

JIANG, Y., YANG, B. AND DEYHOLOS, M.K., 2009, Functional characterization of the Arabidopsis bHLH92 TF in abiotic stress. Mol Genet Genom. 282: 503–516.

JIN, H. AND MARTIN, C., 1999, Multifunctionality and diversity within the plant MYB-gene family. Plant Mol. Biol. 41: 577–585.

JIN, X.F., JIONG, A.S., PENG, R.H., LIU, J.G., GAO, F., CHEN, J.M. AND YAO, Q.H., 2010, OsAREB1, an ABRE binding protein responding to ABA and glucose, has multiple functions in Arabidopsis. BMC Rep. 43: 34-39.

JOBLING, S.A., 2002, Production of a freeze–thaw-stable potato starch by antisense inhibition of three starch synthase genes. Nat. Biotechnol. 20: 295–299

JOFUKU, K.D., B. BOER, M.V., MONTAGU, J.K. AND OKAMURO, 1994, Control of Arabidopsis flower and seed development by the homeotic gene APETALA2, Plant Cell. 6: 1211–1225.

JOHANNESSON, H., WANG, Y. AND ENGSTRO, M.P., 2001, DNA-binding and dimerization preferences of Arabidopsis homeodomain-leucine zipper transcription factors in vitro. Plant Mol Biol. 45: 63–73.

JOHNSON, C., KOLEVSKI, B. AND SMYTH, D., 2002, TRANSPARENT TESTA GLABRA2, a trichome and seed coat development gene of Arabidopsis, encodes a WRKY transcription factor. Plant Cell. 14(6): 1359-1375.

JOURNOT-CATALINO, N., SOMSSICH, I.E., ROBY, D. AND KROJ, T., 2006, The transcription factors WRKY11 and WRKY17 act as negative regulators of basal resistance in Arabidopsis thaliana. Plant Cell. 18(11):3289-3302.

JUNG, C., SEO, J.S., HAN, S.W., KOO, Y.J., KIM, C.H., SONG, S.I., NAHM, B.H., CHOI, Y.D. AND CHEONG, J.J., 2008, Overexpression of AtMYB44 enhances stomatal closure to confer abiotic stress tolerance in transgenic Arabidopsis. Plant Physiol. 146: 623–635.

JUNG, K. H., SEO, Y. S., WALIA, H., CAO, P., FUKAO, T., CANLAS, P. E., AMONPANT, F., BAILEY -SERRES, J. AND RONALD, P. C., 2010, The submergence tolerance regulator Sub1A mediates stress responsive expression of AP2/ERF transcription factors. Plant Physiol. 152: 1674–1692.

JUNG, K.H., HAN, M.J., LEE, Y.S., KIM, Y.W., HWANG, I., KIM, M.J., KIM, Y.K., NAHM, B.H. AND AN, G., 2005, Rice Undeveloped Tapetum1 is a major regulator of early tapetum development. Plant Cell. 17: 2705–2722

KADER, A. AND LINDBERG, S. 2010, Cytosolic calcium and pH signaling in plants under salinity stress. Plant Signal Behav. 5(3): 233–238.

KAISER, W. M., KAISER, G., SCHÖNER, S. AND NEIMANIS, S., 1981, Photosynthesis under osmotic stress. Differential recovery of photosynthetic activities of stroma enzymes, intact chloroplasts and leaf slices after exposure to high solute concentrations. Planta. 153: 430-435.

KAMEI, A., SEKI, M., UMEZAWA, T., ISHIDA, J., SATOU, M., AKIYAMA, K., ZHU, J.K. AND SHINOZAKI, K., 2005, Analysis of gene expression profiles in Arabidopsis salt overly sensitive mutants sos2-1 and sos3-1. Plant Cell Environ. 28: 1267–1275.

KAMINAKA, H., NAKE, C., EPPLE, P., DITTGEN, J. AND SCHUTZE, K., 2006, bZIP10-LSD1 antagonism modulates basal defense and cell death in Arabidopsis following infection. EMBO J. 25: 4400–4411.

KAMOSHITA, A., RODRIGUEZ, R., YAMAUCHI, A. AND WADE, L., 2004, Genotypic variation in response of rainfed lowland to prolonged drought and rewatering. Plant Production Science. 7: 406–420.

KANAOKA, M. M., PILLITTERI, L. J., FUJII, H., YOSHIDA, Y., BOGENSCHUTZ, N. L., TAKABAYASHI, J., ZHU, J.-K. AND TORII, K. U., 2008, SCREAM/ICE1 and SCREAM2 specify three cell-state transitional steps leading to Arabidopsis stomatal differentiation. Plant Cell. 20: 1775–1785.

KANG, J.Y., CHOI, H.I., IM, M.Y. AND KIM, S.Y., 2002, Arabidopsis basic leucine zipper proteins that mediate stress-responsive abscisic acid signaling. Plant Cell. 14:343–357

KARIMI, M., DE MEYER, B. AND HILSON, P., 2005, Modular cloning in plant cells. Trends Plant Sci. 10: 103–105

KARIMI, M., INZE, D. AND DEPICKER, A., 2002, GATEWAY vectors for Agrobacterium-mediated plant transformation. Trends Plant Sci. 7: 193–195

KASUGA, M., MIURA, S., SHINOZAKI, K. AND YAMAGUCHI-SHINOZAKI, K., 2004, A combination of the Arabidopsis DREB1A gene and stress-inducible rd29A promoter improved drought- and low-temperature stress tolerance in tobacco by gene transfer. Plant Cell Physiol. 45: 346–350.

KAZAN, K., 2006, Negative regulation of defence and stress genes by EAR-motif containing repressors. Trends Plant Sci. 11: 109–112.

KESHAMMA, E., ROHINI, S., RAO, K. S., MADHUSUDHAN, B. AND UDAYAKUMAR, M., 2008, Tissue culture independent in planta transformation strategy: an Agrobacterium tumefaciens-mediated gene transfer method to overcome recalcitrance in cotton (Gossypium hirsutum L.). J. Cotton

Sci. 12: 264-272.

KIM, J.C., LEE, S.H., CHEONG, Y.H., YOO, C.M., LEE, S.I., CHUN, H.J., YUN, D.J., HONG, J.C., LEE, S.Y., LIM, C.O. AND CHO, M.J., 2001, A novel cold-inducible zinc finger protein from soybean, SCOF-1, enhances cold tolerance in transgenic plants. Plant J. 25: 247–259.

KIM, S., KANG, J., CHO, D., PARK, J. H. AND KIM. S, Y., 2004, ABF2, an ABRE binding bZIP factor, is an essential component of glucose signaling and its overexpression affects multiple stress tolerance. Plant J. 40: 75–87.

KIM, Y.S., KIM, S.G., PARK, J.E., PARK, H.Y., LIM, M.H., CHUA, N.H. AND PARK, C.M., 2006, A membrane-bound NAC transcription factor regulates cell division in Arabidopsis. Plant Cell. 18: 3132–3144.

KIRIBUCHI, K., JIKUMARU, Y., KAKU, H., MINAMI, E., HASEGAWA, M., KODAMA, O., SETO, H., OKADA, K., NOJIRI, H. AND YAMANE, H., 2005, Involvement of the basic helix-loop-helix transcription factor RERJ1 in wounding and drought stress responses in rice plants. Biosci Biotechnol Biochem. 69: 1042–1044.

KIRIK, V., KO LLE, K., MISE, R.A. S. AND BA UMLEIN, H., 1998, Two novel MYB homologues with changed expression in late embryogenesis-defective Arabidopsis mutants. Plant Mol. Biol. 37: 819–827.

KLEMPNAUER, K. H., TJ GONDA, J. M. AND BISHOP, 1982, Nucleo- tide sequence of the retroviral leukemia gene v-myb and its cellular progenitor c-myb: The architecture of a transduced oncogene. Cell. 31: 453-463.

KLUTZ, D., 2005, Molecular and evolutionary basis of the cellular stress response. Annu Rev Physiol. 67:225-57.

KO, D. K., LEE, M. O., HAHN, J. S., KIM, B. G. AND HONG, C. B., 2009, Submergence-inducible and circadian rhythmic basic helix-loop-helix protein gene in Nicotiana tabacum. J Plant Physiol. 166 (10): 1090-100.

KO, J.H., YANG, S.H., PARK, A.H., LEROUXEL, O. AND HAN, K.H., 2007, ANAC012, a member of the plant-specific NAC transcription factor family, negatively regulates xylary fiber development in Arabidopsis thaliana. Plant J. 50: 1035–1048.

KOBAYASHI, F., MAETA, E., TERASHIMA, A., KAWAURA, K., OGIHARA, Y., TAKUMI, S., 2008, Development of abiotic stress tolerance via bZIP-type transcription factor LIP19 in common wheat. Journal of Experimental Botany. 59: 891-905.

KOIZUMI, N., UJINO, T., SANO, H. AND CHRISPEELS, M. J., 1999, Overexpression of a gene that encodes the first enzyme in the biosynthesis of asparagine-linked glycans makes plants resistant to tunicamycin and obviates the tunicamycin-induced unfolded protein response. Plant Physiol. 121: 353–361.

KOMATSU, K., MAEKAWA, M., UJIIE, S., SATAKE, Y., FURUTANI, I., OKAMOTO, H., SHIMAMOTO, K. AND KYOZUKA, J., 2003, LAX and SPA: major regulators of shoot branching in rice. Proc. Natl. Acad. Sci. USA. 100: 11765–11770.

KOMATSU, S., YANG, G., KHAN, M., ONODERA, H., TOKI, S. AND YAMAGUCHI, M., 2007, Over-expression of calcium-dependent protein kinase 13 and calreticulin interacting protein 1 confers cold tolerance on rice plants. Mol. Genet. Genomics. 277: 713–723.

KOSKULL-DORING, P.V., SCHARF, K.D. AND NOVER, L., 2007, The diversity of plant heat stress transcription factors. Trends Plant Sci. 12:452-457.

KOTAK, S., E. VIERLING, H., BAUMLEIN, P. AND VON KOSKULL-DORING, 2007, A novel transcriptional cascade regulating expression of heat stress proteins during seed development of Arabidopsis, Plant Cell. 19: 182–195.

KOTAK, S., M. PORT, A., GANGULI, F., BICKER, P. AND VON KOSKULL-DORING, 2004, Characterization of C-terminal domains of Arabidopsis heat stress transcription factors (Hsfs) and identification of a new signature combination of plant class A Hsfs with AHA and NES motifs essential for activator function and intracellular localization. Plant J. 39: 98–112.

KOTAK, S., LARKINDALE, J., LEE, U., VON KOSKULL-DORING, P., VIERLING, E. AND SCHARF1, K-D., 2007, Complexity of the heat stress response in plants. Curr. Opin. Plant Biol. 10: 310–316.

KOUSSEVITZKY, S. A., NOTT, T.C., MOCKLER, F., HONG, G., SACHETTO-MARTINS, M., SURPIN, J., LIM, R., CHORY, M, J., 2007, Signals from chloroplasts converge to regulate nuclear gene expression. Science. 316 : 715–719.

KRASENSK, Y. J. AND JONAK, C., 2012, Drought, salt, and temperature stress-induced metabolic rearrangements and regulatory networks. J. Exp. Bot. 63: 1593–1608.

KUMAR, M. W., BUSCH, H., BIRKE, B., KEMMERLING, T., NURNBERGER,,F. AND SCHOFFL, 2009, Heat shock factors HsfB1 and HsfB2b are involved in the regulation of Pdf1.2 expression and pathogen resistance in Arabidopsis, Mol.

Plant. 2:152–165.

KURKELA, S. AND BORG-FRANCK, M., 1992, Structure and expression of kin2, one of two cold- and ABA-induced genes of Arabidopsis thaliana. Plant Mol. Biol. 19: 689–692.

LAFITTE, H. R. AND COURTOIS, B., 2002, Interpreting cultivar x environment interactions for yield in upland rice: assigning value to droughtadaptive traits. Crop Sci. 42: 1409-1420.

LAGACE, M. AND MATTON, D.P., 2004, Characterization of a WRKY TF expressed in late torpedo-stage embryos of Solanum chacoense. Planta. 219:185-189.

LAITY, J. H., LEE, B. M. AND WRIGHT, P. E., 2001, Zinc finger proteins: New insights into structural and functional diversity. Curr. Opin. Struct. Biol. 11: 39–46.

LANG, V. AND PALVA, E.T., 1992, The expression of a rab-related gene, rab18, is induced by abscisic acid during the cold acclimation process of Arabidopsis thaliana (L.) Heynh. Plant Mol Biol. 20: 951–962.

LAPIERRE, C., POLLET, B., PETIT-CONIL, M., TOVAL, G., ROMERO, J., PILATE, G., LEPLE, J.C., BOERJAN, W., FERRET, V., DE NADAI, V. AND JOUANIN, L., 1999, Structural alterations of lignins in transgenic poplars with depressed cinnamyl alcohol dehydrogenase or caffeic acid Omethyltransferase activity have an opposite impact on the efficiency of industrial kraft pulping. Plant Physiol. 119: 153–163.

LARA, P., ONATE-SANCHEZ, L., ABRAHAM, Z., FERRANDIZ, C. AND DIAZ, I., 2003 Synergistic activation of seed storage protein gene expression in Arabidopsis by ABI3 and two bZIPs related to OPAQUE2. J Biol. Chem. 278: 21003–21011.

LEDENT, V., PAQUET, O., VERVOOR,T,M.,2002, Phylogenetic analysis of the human basic helix-loop-helix proteins. Genome Biol. 3: RESEARCH0030

LEE, S. C., CHOI, H. W., HWANG, I. S., CHOI, D. S. AND HWANG, B. K., 2006, Functional roles of the pepper pathogen-induced bZIP transcription factor, CAbZIP1, in enhanced resistance to pathogen infection and environmental stresses. Planta. 224: 1209–1225.

LEE, S.J., KANG, J.Y., PARK, H.J., KIM, M.D., BAE, M.S., CHOI, H.I. AND KIM, S.Y., 2010, DREB2C interacts with ABF2, a bZIP protein regulating abscisic acid-responsive gene expression, and its overexpression affects abscisic acid sensitivity. Plant Physiol. 153: 716–727.

LEE, Y.H. AND CHUN, J.Y., 1998, A new homeodomain-leucine zipper gene from Arabidopsis thaliana induced by water stress and abscisic acid treatment. Plant

Mol Biol. 37: 377–384.

LI, F., GUO, S., ZHAO, Y., CHEN, D., CHONG, K. AND YUNYUAN, X.U., 2010, Overexpression of a homopeptide repeat-containing bHLH protein gene

(OrbHLH001) from Dongxiang Wild Rice confers freezing and salt tolerance in transgenic Arabidopsis. Plant Cell Rep. 29: 977–986.

LI, H., SUN, J., YINGXIU, X. U., JIANG, H., WU, X. AND LI, C., 2007, The bHLH-type transcription factor AtAIB positively regulates ABA response in Arabidopsis. Plant Mol. Biol. 65: 655–665.

LI, J., BRADER, G., KARIOLA, T. AND TAPIO PALVA, E., 2006, WRKY70 modulates the selection of signaling pathways in plant defense. Plant J. 46: 477–491.

LI, X., DUAN, X., JIANG, H., SUN, Y., TANG, Y., YUAN, Z., GUO, J., LIANG, W., CHEN, L., YIN, J., MA, H., WANG, J. AND ZHANG, D., 2006, Genome-wide analysis of basic/helix-loop-helix TF family in rice and Arabidopsis. Plant

Physiol. 141: 1167-1184.

LIANG, Y.K., DUBOS, C., DODD, I.C., HOLROYD, G.H., HETHERINGTON, A.M., AND CAMPBELL, M.M., 2005, AtMYB61, an R2R3-MYB transcription factor controlling stomatal aperture in Arabidopsis thaliana. Curr. Biol. 15: 1201–1206.

LIAO, Y., ZHANG, J.S., CHEN, S.Y. AND ZHANG, W.K., 2008b, Role of soybean GmbZip132 under abscisic acid and salt stresses. J. Integr. Plant Biol. 50: 221-230.

LIAO, Y., ZOU, H., WEI, W., HAO, Y.J., TIAN, A.G., HUANG, J., LIU, Y.F., ZHANG, J.S., AND CHEN, S.Y., 2008a, Soybean GmbZIP44, GmbZIP62 and GmbZIP78 genes function as negative regulator of ABA signaling and confer salt and freezing tolerance in transgenic Arabidopsis. Planta. 228: 225-240.

LIAO, Y., ZOU, H.F., WANG, H.W., ZHANG, W.K., MA, B. AND ZHANG J.S., 2008c, Soybean GmMYB76, GmMYB92, and GmMYB177 genes confer stress tolerance in transgenic Arabidopsis plants. Cell Res. 18: 1047-1060.

LIE`VREMONT, J-P., RIZZUTO, R., HENDEERSHOT, L. AND MELDOLESI, J., 1997, BiP, a major chaperone protein of the endoplasmic reticulum lumen, plays a direct and important role in the storage of the rapidly exchanging pool of Ca21. J. Biol. Chem. 272: 30873–30879.

LIM, C.J., HWANG, J.E., CHEN, H., HONG, J.K., YANG, K.A., CHOI, M.S., LEE, K.O., CHUNG, W.S., LEE, S.Y. AND LIM, C.O., 2007, Over-expression of the Arabidopsis DRE/CRT-binding transcription factor DREB2C enhances thermotolerance. Biochem. Biophys. Res. Commu. 362: 431–436.

LIU, H., YANG. W., LIU, D., HAN, Y., ZHANG, A. AND LI, S., 2011, Ectopic expression of a grapevine transcription factor VvWRKY11 contributes to osmotic stress tolerance in Arabidopsis. Mol Biol Rep. 38: 417-427.

LIU, H., ZOU, G., LIU, G., HU, S., LI, M., YU, X., MEI, H. AND LUO, L., 2005, Correlation analysis and QTL identification for canopy temperature, leaf water potential and spikelet fertility in rice under contrasting moisture regimes. Chinese Science Bulletin, 50: 317-326.

LIU, J. X., SRIVASTAVA, R., CHE, P. AND HOWELL, S. H., 2007a An endoplasmic reticulum stress response in Arabidopsis is mediated by proteolytic processing

and nuclear relocation of a membrane-associated transcription factor, bZIP28. Plant Cell. 19: 4111–4119.

LIU, J.G., QIN, Q.L., ZHANG, Z., PENG, R.H., XIONG, A.S., CHEN, J.M. AND YAO, Q.H., 2009, OsHSF7 gene in rice, Oryza sativa L., encodes a transcription factor that functions as a high temperature receptive and responsive factor. BMB

Reports. 42: 16–21.

LIU, J.X., SRIVASTAVA, R., CHE, P. AND HOWELL, S.H., 2007b, Salt stress responses in Arabidopsis utilize a signal transduction pathway related to endoplasmic reticulum stress signaling. Plant J. 51: 897–909.

LIU, Q. M., KASUGA, Y., SAKUMA, H., ABE, S., MIURA, K,. YAMAGUCHI-SHINOZAKI, K. AND SHINOZAKI, 1998, Two transcription factors, DREB1 and DREB2, with an EREBP/AP2 DNA binding domain separate two cellular signal transduction pathways in droughtand low-temperature-responsive gene expression, respectively, in Arabidopsis, Plant Cell. 10: 1391–1406.

LONG, T. A., TSUKAGOSHI, H., BUSCH, W., LAHNER, B., SALT, D. E. AND BENFEY, P. N., 2010 The bHLH Transcription Factor POPEYE Regulates Response to Iron Deficiency in Arabidopsis Roots. Plant Cell. 22: 2219–2236.

LORETO, F. AND VELIKOVA, V., 2001, Isoprene produced by leaves protects the photosynthetic apparatus against ozone damage, quenches ozone products and reduces lipid peroxidation of cellular membranes. Plant Physiol. 127: 1781-1787.

LU, G., GAO, C., ZHENG, X. AND HAN, B., 2009, Identification of OsbZIP72 as a positive regulator of ABA response and drought tolerance in rice. Planta. 229(3): 605-15.

LU, Z., LIU, D. AND LIU, S., 2007, Two rice cytosolic ascorbate peroxidases differentially improve salt tolerance in transgenic Arabidopsis. Plant Cell Rep. 26(10): 1909–1917.

LUO, M., DENNIS, E., BERGER, F., PEACOCK, W. AND CHAUDHURY, A., 2005. MINISEED3 (MINI3), a WRKY family gene, and HAIKU2 (IKU2), a leucine- rich repeat (LRR) KINASE gene, are regulators of seed size in Arabidopsis. Proc

Natl Acad Sci USA. 102(48): 17531-17536.

LUPAS, A., 1996, Coiled coils: new structures and new functions. Trends Biochem. Sci. 21: 375–382.

MA, C. L. AND MITRA, A., 2002, Expressing multiple genes in a single open reading frame with the 2A region of foot-and-mouth disease virus as a linker. Mol Breed. 9: 191–199

MA, L., SUN, N., LIU, X., JIAO, Y., ZHAO, H. AND DENG, X.W., 2005, Organ-specific expression of Arabidopsis genome during development. Plant Physiol. 138: 80–91.

MA, Y., 2009, Regulators of PP2C phosphatase activity function as abscisic acid sensors. Science. 324: 1064-8.

MACKAY, J. P. AND CROSSLEY, M., 1998, Zinc fingers are sticking together. Trends

Biochem. Sci. 23: 1–4.

MAEO, K., HAYASHI, S., KOJIMA-SUZUKI, H., MORIKAMI, A. AND NAKAMURA. D., 2001, Role of conserved residues of the WRKY domain in the DNA-binding of tobacco WRKY family proteins. Biosci Biotechnol Biochem. 65:2428–2436.

MAJEE. M., MAITRA, S., DASTIDAR, K.G., PATTNAIK, S. AND CHATTERJEE, A., 2004, A novel salt-tolerant L-myo-inositol-1-phosphate synthase from Porteresiacoarctata (Roxb.) Tateoka, a halophytic wild rice: molecular cloning, bacterial overexpression, characterization, and functional introgression into tobacco-conferring salt tolerance phenotype. J Biol Chem. 279(27): 28539-52.

MALY, F.E., NAKAMURA, M., GAUCHAT, J.F., URWYLER. A., WALKER, C., DAHINDEN, C.A., CROSS, A.R., JONES, O.T. AND DE WECK, A.L., 1989, Superoxide dependent nitroblue tetrazolium reduction and expression of cytochrome b-245 components by human tonsillar B lymphocytes and B cell lines. J Immunol. 142: 1260-1267.

MANOJ KUMAR, A., REDDY, K. N., ROHINI S., GIRIJA G. AND UDAYAKUMAR, M., 2009, Towards crop improvement in capsicum (Capsicum annuum L.): transgenics (uid A:: hpt II) by a tissue-culture-independent Agrobacterium-mediated in planta approach. Sci. Hortic., 119: 362–370.

MAQBOOL, S.B., RIAZUDDIN, S., LOC, N.T., GATEHOUSE, A.M.R., GATEHOUSE, J.A. AND CHRISTOU, P., 2001, Expression of multiple insecticidal genes confers broad resistance against a range of different rice pests. Mol. Breed. 7: 85–93.

MAROCO, J. P., PEREIRA, J. S., CHAVES, M., 1997, Stomatal responses to leaf-to-air vapour pressure deficit in Sahelian species. Aust. J. Plant Physiol. 24: 381–387.

MARTINEZ, I. M. AND CHRISPEELS, M. J., 2003, Genomic analysis of the unfolded protein response in Arabidopsis shows its connection to important cellular processes. Plant Cell. 15: 561–576.

MARUYAMA, K. Y., SAKUMA, M., KASUGA, Y., ITO, M., SEKI, H., GODA, Y., SHIMADA, S., YOSHIDA, K., SHINOZAKI, K. AND YAMAGUCHI-SHINOZAKI, 2004, Identification of cold-inducible downstream genes of the Arabidopsis DREB1A/CBF3 transcriptional factor using two microarray systems, Plant J. 38 : 982–993.

MASSARI, M.E. AND MURRE, C., 2000, Helix-loop-helix proteins: Regulators of transcription in eukaryotic organisms. Mol. Cell. Biol. 20: 429–440.

MATSUKURA, S., MIZOI, J., YOSHIDA, T., TODAKA, D., ITO, Y., MARUYAMA, K., SHINOZAKI, K. AND YAMAGUCHI-SHINOZAKI K, 2010, Comprehensive analysis of rice DREB2-type genes that encode transcription factors involved in the expression of abiotic stress-responsive genes. Mol. Genet.

Genomics. 283: 185–196.

MATTANA, M., BIAZZI, E., CONSONNI, R., LOCATELLI. F., VANNINI, C., PROVERA, S. AND CORAGGIO, I., 2005, Overexpression of Osmyb4

Enhances Compatible Solute Accumulation and Increases Stress Tolerance of Arabidopsis thaliana. Physiol. Plantarum. 125: 212– 223.

MEIRI, D. AND BREIMAN, A., 2009, Arabidopsis ROF1 (FKBP62) modulates thermotolerance by interacting with HSP90.1 and affecting the accumulation of HsfA2-regulated sHSPs. Plant J. 59 : 387–399.

MELCHER, K., ZHOU, X. E. AND XU, H. E., 2010, Thirsty plants and beyond: structural mechanisms of abscisic acid perception and signaling. Curr Opin

Struct Biol. 20: 722-729.

MELCHIORRE, M. G., ROBERT, V., TRIPPI, R., RACCA, H.R., LASCANO, 2009, Superoxide dismutase and glutathione reductase overexpression in wheat protoplast: photooxidative stress tolerance and changes in cellular redox state. Plant Growth Regul. 57 :57-68.

MICHELMORE, R., KOZIK, A., TRUCO, M. J., MATVIENCHO, M., OCHOA, O., DAMME, M. V., LAVELLE, D., LIN, H., PANDE, B., MCHALE, L., SUDARSHANA, P., ARGYRIS, J., ELLISON, P., BRADFORD, K., JACKSON, L. AND KESSELI, R., 2003, ESTs and candidate gene approaches in the Compositae Genome Project. Eucarpia Leafy Vegetable. 13: 131-136.

MITSUDA, N. AND OHME-TAKAGI, M., 2009, Functional analysis of TFs in Arabidopsis. Plant Cell Physiol. 50: 1232-1248

MITTLER, R. S., VANDERAUWERA, M., GOLLERY, F. AND VAN BREUSEGEM, 2004, Reactive oxygen gene network of plants. Trends Plant Sci. 9: 490e498.

MONTIEL, G., GANTET, P., JAY-ALLEMAND, C. AND BRETON, C., 2004, Transcription factor networks. Pathways to the knowledge of root development. Plant Physiol. 136: 3478–3485.

MORELLI, G. AND RUBERTI, I., 2002, Light and shade in the photocontrol of Arabidopsis growth. Trends Plant Sci. 7: 399-404.

MORIMOTO, R.I., 2002, Dynamic remodeling of transcription complexes by molecular chaperones. Cell. 110:281.

MUDGETT, M.B. AND CLARKE, S., 1993, Characterization of plant L-isoaspartyl methyltransferases that may be involved in seed survival: Purification, cloning, and sequence analysis of the wheat germ enzyme. Biochemistry. 32: 11100–11111.

MUDGETT, M.B. AND CLARKE, S., 1994, Hormonal and environmental responsiveness of a developmentally regulated protein repair L-isoaspartyl methyltransferase in wheat. J. Biol. Chem. 269: 25605– 25612.

MUDGETT, M.B., LOWENSON, J.D. AND CLARKE, S., 1997, Protein repair L-isoaspartyl methyltransferase in plants. Phylogenetic distribution and the accumulation of substrate proteins in aged barley seeds. Plant Physiol. 115: 1481–1489.

MUKHERJEE, K., BURGLIN, T.R. AND MEKHLA, 2006, a novel domain with similarity to PAS domains, is fused to plant homeodomain-leucine zipper III proteins. Plant Physiol. 140:1142-50.

MUKHERJEE. K., CHOUDHURY, A. R., GUPTA, B., GUPTA, S. AND SENGUPTA, D. N., 2006, An ABRE-binding factor, OSBZ8, is highly expressed in salt

tolerant cultivars than in salt sensitive cultivars of indica rice. BMC Plant Biol. 6: 18

MUKHOPADHYAY, A., VIJ, S. AND TYAGI, A.K., 2004, Overexpression of a zinc-finger protein gene from rice confers tolerance to cold, dehydration, and salt stress in transgenic tobacco. Proc. Nat. Acad. Sci. USA. 101: 6309–6314.

MUNDY, J. AND CHUA, N. H., 1988, Abscisic acid and water-stress induce the expression of a novel rice gene. EMBO J. 7: 2279-2286.

MURASHIGE, T. AND SKOOG, F., 1962, A revised medium for rapid growth and bio assays with tobacco tissue culture. Physiol Plant. 15: 473–497.

MUSZYNSKI, M.G., DAM, T., LI, B., SHIRBROUN, D.M., HOU, Z., BRUGGEMANN, E., ARCHIBALD, R., ANANIEV, E.V. AND DANILEVSKAYA, O.N., 2006, delayed flowering1 encodes a basic leucine zipper protein that mediates floral inductive signals at the shoot apex in maize. Plant Physiol. 142: 1523–1536.

NAGAMIYA, K. T., MOTOHASHI, K., NAKAO, S.H., PRODHAN, E., HATTORI, S., HIROSE, K., OZAWA, Y., OHKAWA, T., TAKABE, T., TAKABE, A. AND KOMAMINE, 2007, Enhancement of salt tolerance in transgenic rice expressing an Escherichia coli catalase gene, katE, Plant Biotechnol. Rep. 1: 49-55.

NAGASHIMA, Y., MISHIBA, K., SUZUKI, E., SHIMADA, Y., IWATA, Y. AND KOIZUMI, N., 2011, Arabidopsis IRE1 catalyses unconventional splicing of bZIP60 mRNA to produce the active transcription factor. Sci. Rep. 1: 29.

NAKASHIMA, K. AND YAMAGUCHI-SHINOZAKI, K., 2005, Molecular studies on Stress-Responsive Gene Expression in Arabidopsis and Improvement of Stress Tolerance in Crop. Plants Regulon Biotechnol. JARQ. 39:221-229.

NAKASHIMA, K., SHINWAR, Z.K., SAKUMA, Y., SEKI, M., MIURA, S., SHINOZAKI, K. AND YAMAGUCHI-SHINOZAKI. K., 2000, Organization and expression of two Arabidopsis DREB2genes encoding DRE-binding proteins involved in dehydration- and high salinity-responsive gene expression. Plant

Mol. Biol. 42: 657–665.

NAKASHIMA, K., TRAN ,L.S.P., NGUYEN, D.V., FUJITA, M., MARUYAMA, K., TODAKA, D., ITO, Y., HAYASHI, N., SHINOZAKI, K. AND YAMAGUCHI-SHINOZAKI, K., 2007, Functional analysis of a NAC-type transcription factor OsNAC6 involved in abiotic and biotic stress-responsive gene expression in rice. Plant J. 51: 617–630.

NAQVI, S., FARRE, G., SANAHUJA, G, CAPELL, T., ZHU, C. AND CHRISTOU, P., 2010, When more is better: multigene engineering in plants. Trends Plant Sci. 15: 48-56.

NAWRATH, C., POIRIER, Y. AND SOMERVILLE, C., 1994, Targeting of the polyhydroxybutyrate biosynthetic-pathway to the plastids of Arabidopsis

thaliana results in high-levels of polymer accumulation. Proc. Natl. Acad. Sci.

USA. 91: 12760–12764.

NAYYAR, H. AND GUPTA, D., 2006, Differential sensitivity of C3 and C4 plants to water deficit stress: association with oxidative stress and antioxidants. Environ.

Exp. Bot. 58: 106-113.

NESI, N., DEBEAUJON, I., JOND, C., PELLETIER, G., CABOCHE, M. AND LEPINIEC, L. 2000, The TT8 gene encodes a basic helix-loop-helix domain protein required for expression of DFR and BAN genes in Arabidopsis siliques. Plant Cell. 12: 1863–1878.

NEWMAN, L.J., PERAZZA, D.E., JUDA, L. AND CAMPBELL, M.M., 2004, Involvement of the R2R3-MYB, AtMYB61, in the ectopic lignification and dark-photomorphogenic components of the det3 mutant phenotype. Plant J. 37: 239–50.

NI, M. TEPPERMAN, J. M. AND QUAIL., P. H. 1998, PIF3, a phytochrome-interacting factor necessary for normal photoinduced signal transduction, is a novel basic helix– loop–helix protein. Cell. 95:657–667.

NIEVA, C., BUSK, P.K., DOMINGUEZ-PUIGJANER, E., LUMBRERAS, V. AND TESTILLANO, P.S., 2005, Isolation and functional characterisation of two new bZIP maize regulators of the ABA responsive gene rab28. Plant Mol Biol. 58: 899–914.

NIJHAWAN, A., JAIN, M., TYAGI, A.K. AND KHURANA, J.P., 2008, Genomic survey and gene expression analysis of the basic leucine zipper transcription factor family in rice. Plant Physiol. 146: 333–350.

NISHIMURA, N., 2009, Structural mechanism of abscisic acid binding and signaling by dimeric PYR1. Science. 326: 1373-1379.

NISHIZAWA-YOKOI, A. R., NOSAKA, H., HAYASHI, H., TAINAKA, T., MARUTA, M., TAMOI, M., IKEDA, M., OHME-TAKAGI, K., YOSHIMURA, Y., YABUTA, S. AND SHIGEOKA, 2011, HsfA1d and HsfA1e involved in the transcriptional regulation of HsfA2 function as key regulators for the Hsf signaling network in response to environmental stress. Plant Cell Physiol. 52: 933–945.

NIU, X. T., HELENTJARIS, N.J. AND BATE, 2002, Maize ABI4 binds coupling element1 in abscisic acid and sugar response genes. Plant Cell. 14: 2565–2575.

NOCTOR, G. AND FOYER, C.H., 1998, A re-evaluation of the ATP: NADPH budget during C3 photosynthesis. A contribution from nitrate assimilation and its associated respiratory activity? J. Exp. Bot. 49: 1895-1908.

NOVER, L., BHARTI, K., DORING, P., MISHRA, S.K., GANGULI, A. AND SCHARF, K.D., 2001, Arabidopsis and the heat stress transcription factor world: how many heat stress transcription factors do we need? Cell Stress Chaperones. 6: 177–189.

NURUZZAMAN, M., MANIMEKALAI, R., SHARONI, A.M., SATOH, K., KONDOH, H., OOKA, H. AND KIKUCHI, S. 2010, Genome-wide analysis of NAC transcription factor family in rice. Gene. 465: 30–44.

O’TOOLE, J. C. AND BLAND, W. L., 1987. Genotypic variation in crop plant root systems. Adv. Agron. 41: 91–145.

O’TOOLE, J. C., AND CHANG, T.T., 1979, Drought resistance in cereals-rice: a case study. In H Mussell, RC Staples, eds, Physiology of Crop Plants. John Wiley & Sons, New York, pp: 374–405.

OGAWA, D. K., YAMAGUCHI, T. AND NISHIUCHI, 2007, High-level overexpression of the Arabidopsis HsfA2 gene confers not only increased themotolerance but also salt/osmotic stress tolerance and enhanced callus growth, J. Exp. Bot. 58 :3373–3383.

OGE, L., BOURDAIS, G., BOVE, J., COLLET, B., GODIN, B., GRANIER, F., BOUTIN, J-P., JOB, D., JULLIEN, M. AND GRAPPINA, P., 2008, Protein Repair L-Isoaspartyl Methyltransferase1 Is Involved in Both Seed Longevity and Germination Vigor in Arabidopsis. Plant Cell. 20: 3022–3037.

OH, S.J., SONG, S.I., KIM, Y.S., JANG, H.J., KIM. S,Y., KIM, M., KIM, Y.K., NAHM, B.H. AND KIM, J. K., 2005, Arabidopsis CBF3/DREB1A and ABF3 in transgenic rice increased tolerance to abiotic stress without stunting growth. Plant Physiology. 138: 341–351.

OHASHI, Y., OKA ,A., POUSADA, R.R., POSSENTI, M., RUBERTI, I., MORELLI, G. AND AOYAMA, T., 2003, Modulation of phospholipid signaling by GLABRA2 in root-hair pattern formation. Science. 300:1427-30.

OHME-TAKAGI, M. H., SHINSHI, 1995, Ethylene-inducible DNA binding proteins that interact with an ethylene-responsive element. Plant Cell. 7: 173–182.

OHNISHI, T., SUGAHARA, S., YAMADA, T., KIKUCHI, K., YOSHIBA, Y., HIRANO, H. Y. AND TSUTSUMI, N., 2005, OsNAC6, a member of the NAC gene family, is induced by various stresses in rice. Genes Genet. Syst. 80(2):135-9.

OLSSON, A.S.B., PETER ENGSTROM, P. AND SODERMAN, E., 2004, The homeobox genes ATHB12 and ATHB7 encode potential regulators of growth in response to water deficit in Arabidopsis. Plant Mol Biol. 55:663-77.

OLSZEWSKI, N., SUN, T. P. AND GUBLER, F., 2002, Gibberellin signalling: biosynthesis, catabolism and response pathway. Plant Cell, 14: 61-80.

OOKA, H., SATOH, K., DOI, K., NAGATA, T., OTOMO, Y., MURAKAMI, K., MATSUBARA, K., OSATO, N., KAWAI, J., CARNINCI, P., HAYASHIZAKI, Y., SUZUKI, K., KOJIMA, K., TAKAHARA, Y., YAMAMOTO, K. AND KIKUCHI, S., 2003, Comprehensive analysis of NAC family genes in Oryza sativa and Arabidopsis thaliana. DNA Res. 10: 239–247.

OSTERLUND, M.T., HARDTKE, C.S., WEI, N. AND DENG, X.W., 2000, Targeted destabilization of HY5 during light-regulated development of Arabidopsis. Nature. 405: 462–466.

OTSUGA, D., DEGUZMAN, B., PRIGGE, M.J., DREWS, G.N. AND CLARK, S.E., 2001, REVOLUTA regulates meristem initiation at lateral position. Plant J. 25:223-36.

OUELLET, F., VAZQUEZ-TELLO, A. AND SARHAN, F., 1998, The wheat wcs120 promoter is cold inducible in both monocotyledonous and dicotyledonous species. FEBS Letters. 423: 324–328.

PABO, C. O., PEISACH, E. AND GRANT, R. A., 2001, Design and selection of novel Cys2His2 zinc finger proteins. Annu. Rev. Biochem. 70: 313–340.

PALENA, C.M., GONZALEZ, D.H., AND CHAN, R.L., 1999, A monomer–dimer equilibrium modulates the interaction of the sunflower homeodomain leucine-zipper protein Hahb-4 with DNA. Biochem. J. 341: 81–87.

PARK, J. M., PARK, C-J., LEE, S-B., HAM, B-K., SHIN, R. AND PAEK, K-H., 2001, Overexpression of the tobacco Tsi1 gene encoding an EREBP/AP2-type transcription factor enhances resistance against pathogen attack and osmotic stress in tobacco. Plant Cell. 13: 1035–1046.

PARK, S.Y., 2009, Abscisic acid inhibits type 2C protein phosphatases via the PYR/PYL family of START proteins. Science. 324, 1068-71.

PASQUALI, G., BIRICOLTI, S., LOCATELLI, F., BALDONI, E. AND MATTANA, M., 2008, Osmyb4 expression improves adaptive responses to drought and cold stress in transgenic apples. Plant Cell Rep. 27: 1677-1686.

PASSIOURA, J. B., 1996, Drought and drought tolerance. Plant Growth Regul. 20: 79–83.

PAVANI, C., 2006 Development and characterisation of transgenics over expressing cry

genes in field bean against Helicoverpa armigera (Hubner). M. Sc. Thesis, University of Agricultural Sciences, Bangalore, India pp. 99.

PAYNE, C. T.F., ZHANG, AND A. M. LLOYD., 2000, GL3 encodes a bHLH protein that regulates trichome development in Arabidopsis through interaction with GL1 and TTG1. Genetics. 156:1349–1362.

PAZ-ARES, J., GHOSAL, D., WIENAND, U., PETERSON, P.A. AND SAEDLER, H., 1987, The regulatory cl locus of Zea mays encodes a protein with homology to myb proto-oncogene products and with structural similarities to transcriptional activators. EMBO f. 6: 3553-3558.

PELLEGRINESCHI, A., REYNOLDS, M., PACHECO, M., BRITO, R.M., ALMERAYA, R., YAMAGUCHI-SHINOZAKI, K. AND HOISINGTON, D., 2004, Stress-induced expression in wheat of the Arabidopsis thaliana DREB1A gene delays water stress symptoms under greenhouse conditions. Genome 47: 493–500.

PERSSON S, WYATT, S. E., LOVE, J., THOMPSON, W. F., ROBERTSON, D. AND BOSS, W. F., 2001 The Ca2+ status of the endoplasmic reticulum is altered by induction of calreticulin expression in transgenic plants. Plant Physiol. 126: 1092–1104.

PILLITTERI, L .J. AND TORII, K. U., 2007, Breaking the silence: three bHLH proteins direct cell-fate decisions during stomatal development. BioEssays, 29: 861–870.

PRATIBHA, M. D., 2012, Genetic variability and relevance of epicuticular waxes: physiological characterization and differential expression of a few wax biosynthetic genes leading to allele mining. M. Sc thesis, University of Agricultural Sciences, Bangalore, India.

PRIETO-DAPENA, P. R., CASTANO, C., ALMOGUERA, J. AND JORDANO, 2008, The ectopic overexpression of a seed-specific transcription factor, HaHSFA9, confers tolerance to severe dehydration in vegetative organs. Plant J. 54 : 1004–1014.

PRIGGE, M.J., OTSUGA, D., ALONSO, J.M., ECKER, J.R., DREWS, G.N. AND CLARK, S.E., 2005, Class III homeodomain leucine zipper gene family members have overlapping, antagonistic and distinct roles in Arabidopsis development. Plant Cell. 17:61-76.

PUHAKAINEN, T., HESS, M.W., MÄKELÄ, P., SVENSSON, J., HEINO, P. AND PALVA, E.T., 2004, Overexpression of multiple dehydrin genes enhances tolerance to freezing stress in Arabidopsis. Plant Mol Biol. 54:743-753.

QI, B., 2004, Productionof very long chain polyunsaturatedomega-3 and omega-6 fatty acids in plants. Nat. Biotechnol. 22: 739–745.

QIN, F., KAKIMOTO, M., SAKUMA, Y., MARUYAMA, K., OSAKABE, Y., TRAN, L.S., SHINOZAKI, K. AND YAMAGUCHI-SHINOZAKI, K., 2007, Regulation and functional analysis of ZmDREB2A in response to drought and heat stresses in Zea mays L. The Plant Journal. 50: 54–69.

QIU, Y.P. AND YU, D.Q., 2009, Over-expression of the stress-induced OsWRKY45 enhances disease resistance and drought tolerance in Arabidopsis. Environ. Exp.

Bot. 65: 35–47

QURESHI, M. I., QADIR, S. AND ZOLLA, L., 2007, Proteomics-based dissection of stress-responsive pathways in plants. J. Plant Physiol. 164: 1239–1260.

RAMEGOWDA, H. V., 2009, Cloning and functional characterization of moisture stress responsive transcription factors from finger millet [Eleusine coracana (L.) Gaertn.] Ph. D thesis, University of Agricultural Sciences, Bangalore, India.

RAMEGOWDA, V., SENTHIL-KUMAR, M., NATARAJA, K. N., REDDY, M. K., MYSORE, K. S. AND UDAYAKUMAR, M., 2012, Expression of a Finger Millet Transcription Factor, EcNAC1, in Tobacco Confers Abiotic Stress-Tolerance. PLoS ONE 7(7): e40397.

RAMPEY, R.A., WOODWARD, A.W., HOBBS, B.N., TIERNEY, M.P., LAHNER, B., SALT, D.E., AND BARTEL, B., 2006, An Arabidopsis basic helix-loophelix leucine zipper protein modulates metal homeostasis and auxin conjugate responsiveness. Genetics. 174: 1841–1857.

RAO, K. S., SREEVATHSA, R., SHARMA, P. D., KESHAMMA, E. AND UDAYAKUMAR, M., 2008, In planta transformation of pigeon pea: a method to overcome recalcitrancy of the crop to regeneration in vitro. Physiol. Mol. Biol.

Plant., 14: 321–328.

RIECHMANN, J.L., HEARD, J., MARTIN, G., REUBER, L., JIANG, C., KEDDIE, J., ADAM, L., PINEDA, O., RATCLIFFE, O.J., SAMAHA, R.R., CREELMAN, R., PILGRIMM, BROUN, P., ZHANG, J.Z., GHANDEHARI, D., SHERMAN, B.K, AND YU, G., 2000, Arabidopsis transcription factor: genome wide comparative analysis among eukaryotes. Science. 290: 2105–2110.

RIZHSKY, L., LIANG, H.J., SHUMAN, J., SHULAEV, V., DAVLETOVA, S., AND MITTLER, R., 2004, When defense pathways collide. The response of Arabidopsis to a combination of drought and heat stress. Plant Physiol. 134: 1683–1696.

ROBERTS, J. K., DESIMONE, N. A., LINGLE, W. L. AND DURE, III, L., 1993. Cellular concentrations and uniformity of cell-type accumulation of two LEA proteins in cotton embryos. Plant Cell 5: 769–780.

ROBINSON, S., DE BARBIER REUILLE, P., CHAN, J., BERGMANN, D., PRUSINKIEWICZ, P. AND COEN, E., 2011, Generation of spatial patterns through cell polarity switching. Science.333: 1436–1440.

ROHINI, V. K. AND RAO, K. S., 2000a, Embryo transformation, a practical approach for realizing transgenic plants of safflower (Carthamus tinctorius L.). Ann. Bot., 86: 1043-1049.

ROSINSKI, J.A. AND ATCHLEY, W.R., 1998, Molecular evolution of the Myb family of transcription factors: evidence for polyphyletic origin. J. Mol. Evol. 46: 74–83.

RUBERTI, I., SESSA, G., LUCCHETTI, S. AND MORELLI, G., 1991, A novel class of plant proteins containing a homeodomain with a closely linked leucine zipper motif. EMBO J. 10: 1787–1791.

RUCKER, K.S., KVIEN, C.K., HOLBROOK, C.C. AND HOOK, J. E., 1995, Identification of peanut genotypes with improved drought avoidance traits. Peanut Sci. 24: 14-18.

RUSHTON, P., TORRES, J., PARNISKE, M., WERNERT, P., HAHLBROCK, K. AND SOMSSICH, I., 1996, Interaction of elicitor-induced DNA-binding proteins with elicitor response elements in the promoters of parsley PR1genes. EMBO J. 15(20): 5690-5700.

SABLOWSKI, R.W. AND MEYEROWITZ, E.M., 1998, A homolog of NO APICAL MERISTEM is an immediate target of the floral homeotic genes APETALA3/PISTILLATA. Cell. 92: 93-103.

SAKAMOTO, W., OHMORI, T., KAGEYAMA, K., MIYAZAKI, C., SAITO, A., MURATA, M., NODA, K., AND MAEKAWA, M., 2001, The Purple leaf (Pl) locus of rice: the Pl(w) allele has a complex organization and includes two genes encoding basic helix-loop-helix proteins involved in anthocyanin biosynthesis. Plant Cell Physiol. 42: 982–991.

SAKUMA, Y. K., MARUYAMA, Y., OSAKABE, F., QIN, M., SEKI, K., SHINOZAKI, K. AND YAMAGUCHI- SHINOZAKI, 2006, Functional analysis of an Arabidopsis transcription factor, DREB2A, involved in drought-responsive gene expression. Plant Cell 18: 1292–1309.

SAKUMA, Y. Q., LIU, J.G., DUBOUZET, H., ABE, K., SHINOZAKI, K. AND YAMAGUCHI-SHINOZAKI, 2002, DNA-binding specificity of the ERF/AP2 domain of Arabidopsis DREBs, transcription factors involved in dehydration- and cold-inducible gene expression. Biochem. Biophys. Res. Commun. 290: 998–1009.

SALEH, A., LUMRERAS, V., AND PAGES, M., 2005, Functional role of DRE binding transcription factors in abiotic stress. In: Tuberosa R, Phillips RL, Gale M, eds. Proceedings of the International Congress ‘In the Wake of the Double Helix From the Green Revolution to the Gene Revolution’, Bologna, Italy pp: 27–31.

SAMBROOK, J., FRITSCH, E. F. AND MANIATIS, T., 1989, Molecular cloning: a laboratory Manual, 2nd ed. (cold spring Harbor, NY: Cold Spring Harbor).

SANCHEZ, D.H., SIAHPOOSH, M.R., ROESSNER, U., UDVARDI, M. AND KOPKA, J., 2008, Plant metabolomics reveals conserved and divergent metabolic responses to salinity. Physiologia Plantarum 132: 209–219.

SANTIAGO, J., 2009, Modulation of drought resistance by the abscisic acid receptor PYL5 through inhibition of clade A PP2Cs. Plant J. 60: 575-88.

SARRET, G., SAUMITOU-LAPRADE, P., BERT, V., PROUX, O., HAZEMANN, J.L., 2002, Forms of Zinc Accumulated in the Hyperaccumulator Arabidopsis halleri.

Plant Physiol. 130:1-12.

SATOH, R., FUJITA, Y., NAKASHIMA, K., SHINOZAKI, K., YAMAGUCHI-SHINOZAKI, K., 2004, A novel subgroup of bZIP proteins functions as transcriptional activators in hypoosmolarity-responsive expression of the ProDH gene in Arabidopsis. Plant Cell Physiol. 45: 309–317.

SAVITCH, L.V., ALLARD, G., SEKI, M., ROBERT, L.S., TINKER, N.A., HUNER, N.P.A., SHINOZAKI, K. AND SINGH, J., 2005, The effect of overexpression of two Brassica CBF/DREB1-like transcription factors on photosynthetic capacity and freezing tolerance in Brassica napus. Plant and Cell Physiology. 46: 1525–1539.

SAWA, S., OHGISHI, M., GODA, H., HIGUCHI, K., SHIMADA, Y., YOSHIDA, S. AND KOSHIBA, T., 2002, The HAT2 gene, a member of the HD-Zip gene family, isolated as an auxin inducible gene by DNA microarray screening, affects auxin response in Arabidopsis. Plant J. 32: 1011–1022.

SCARPECI, T.E., ZANOR, M.I., CARRILLO, N., MUELLER-ROEBER, B. AND VALLE, E.M., 2008, Generation of superoxide anion in chloroplasts of Arabidopsis thaliana during active photosynthesis: a focus on rapidly induced genes. Plant Mol Biol. 66: 361-378

SCHMIDT, R., JOS, H.M., SCHIPPERS, ANNELIE WELKER, DELPHINE MIEULET, EMMANUEL GUIDERDONI AND BERND MUELLER-ROEBER, 2012, Transcription factor OsHsfC1b regulates salt tolerance and development in Oryza sativa ssp. Japonica. AoB PLANTS: pls011; doi:10.1093/aobpla/pls011.

SCHRAMM, F., J. LARKINDALE, E., KIEHLMANN, A., GANGULI, G., ENGLICH, E., VIERLING, P., VON KOSKULL-DORING, 2008, A cascade of transcription factor DREB2A and heat stress transcription factor HsfA3 regulates the heat stress response of Arabidopsis, Plant J. 53 : 264–274.

SCHRICK, K., NGUYEN, D., KARLOWSKI, W.M. AND MAYER, K.F.X., 2004, START lipid/sterol-binding domains are amplified in plants and are predominantly associated with homeodomain transcription factors. Genome Biol. 41.

SENTHIL-KUMAR, M. AND UDAYAKUMAR, M. 2004, Development of thermotolerant tomato (Lycopersicon esculentum Mill.) lines: an approach based on mutagenesis. J. Plant Biol. (India). 31: 139–48.

SENTHIL-KUMAR, M., KUMAR, G., SRIKANTHBABU, V. AND UDAYAKUMAR, M., 2007, Assessment of variability in acquired thermotolerance: Potential option to study genotypic response and the relevance of stress genes. J Plant Physiol. 164:111-125.

SENTHIL-KUMAR, M., SRIKANTHBABU, V., MOHANRAJU, B., KUMAR, G., SHIVAPRAKASH, N. AND UDAYAKUMAR, M., 2003, Screening of inbred lines to develop thermotolerant sunflower hybrid through temperature induction response (TIR) technique: A novel approach by exploiting residual variability. J

Exp Bot. 54:2569-2578.

SEO, P.J., S.G. KIM, AND C.M. Park, 2008, Membrane-bound transcription factors in plants, Trends Plant Sci. 13: 550–556.

SERRAJ, R., KRISHNAMURTHY, L., KASHIWAGI, J. W., KUMAR, J., CHANDRA, S. AND CROUCH, J. H., 2004, Variation in root traits of chickpea (Cicer arietinum L.) grown under terminal drought. Field Crops Res. 88: 115–127.

SESSA, G., CARABELLI, M., SASSI, M., CIOLFI, A., POSSENTI, M., MITTEMPERGHER, F., BECKER, J., MORELLI, G., RUBERTI, I., 2005, A dynamic balance between gene activation and repression regulates the shade avoidance response in Arabidopsis. Genes Dev, 19:2811-5.

SESSA, G., MORELLI, G., RUBERTI, I., 1997, DNA-binding specificity of the homeodomain leucine zipper domain. J. Mol. Biol. 274: 303–309.

SHAMEER, K., AMBIKA, S., VARGHESE, S.M., KARABA, N., UDAYAKUMAR, M. AND SOWDHAMINI, R., 2009, STIFDB—Arabidopsis Stress Responsive TF DataBase. Int J Plant Genomics. 583429.

SHAN, D.P., HUANG, J.G., YANG, Y.T., GUO, Y.H., WU, C.A., YANG, G.D., GAO, Z. AND ZHENG, C.C., 2007, Cotton GhDREB1 increases plant tolerance to low temperature and is negatively regulated by gibberellic acid. New Phytologist. 176: 70–81.

SHATERIAN, J., GEORGES, F., HUSSAIN, A., WATERER, D., JONG, H. D. AND TANINO, K. K., 2005, Root to shoot communication and abscisic acid in calreticulin (CR) gene expression and salt-stress tolerance in grafted diploid potato clones. Environ. Exp. Bot. 53: 323–332.

SHEN, J. AND PRYWES, R., 2005, ER stress signaling by regulated proteolysis of ATF6. Methods 35: 382–389.

SHEN, W. AND FORDE, B. G., 1989, Efficient transformation of Agrobacterium spp. by high voltage electroporation. Nucleic Acids Res. 17: 8385.

SHEN, Y.G., ZHANG, W.K., YAN, D.Q., DU, B.X., ZHANG, J.S., LIU, Q. AND CHEN, S.Y., 2003, Characterization of a DRE-binding transcription factor from a halophyte. Atriplex hortensis. Theoretical and Applied Genetics. 107: 155–161.

SHEORAN, I.S. AND SAINI, H.S., 1996, Drought-induced male sterility in rice: changes in carbohydrate levels and enzyme activity associated with the inhibition of starch accumulation in pollen. Sex Plant Reprod. 9: 161–169

SHESHSHAYEE, M.S., BINDUMADHAVA, H., SHANKAR, A.G., PRASAD, T.G. AND UDAYAKUMAR, M., 2003, Breeding strategies to exploit water use efficiency for crop improvement. Journal of Plant Biology. 30 (2):253–268.

SHIGYO, M., AND ITO, M., 2004, Analysis of gymnosperm two-AP2-domain-containing genes. Dev. Genes Evol. 214 :105–114.

SHIM, D.J.U., HWANG, J., LEE, S., LEE, Y., CHOI, G., AN, E., MARTINOIA, Y. AND LEE, 2009, Orthologs of the class A4 heat shock transcription factor HsfA4a confer cadmium tolerance in wheat and rice. Plant Cell. 21: 4031–4043.

SHIN, D., MOON, S.J., HAN, S., KIM, B.G., PARK, S.R., LEE, S.K., YOON, H.J., LEE, H.E., KWON, H.B., BAEK, D., YI, B.Y. AND BYUN, M.O., 2011, Expression of StMYB1R-1, a novel potato single MYB-like domain transcription factor, increases drought tolerance. Plant Physiology. 155: 421-432.

SHINWARI, Z.K.K., NAKASHIMA, S., MIURA, M., KASUGA, M., SEKI, K., YAMAGUCHI- SHINOZAKI, K. AND SHINOZAKI, 1998, An Arabidopsis gene family encoding DRE/CRT binding proteins involved in low-temperature-responsive gene expression. Biochem. Biophys. Res. Commun. 250: 161–170.

SHUKLA, R.K., RAHA, S., TRIPATHI, V., CHATTOPADHYAY, D., 2006, Expression of CAP2, an APETALA2-family transcription factor from chickpea, enhances growth and tolerance to dehydration and salt stress in transgenic tobacco. Plant Physiology. 142: 113–123.

SIDDIQUE, M.R.B., HAMID, A. AND ISLAM, M.S., 2001, Drought stress effects on water relations of heat. Bot. Bull. Acad. Sin. 41: 35-39.

SILVEIRA, A.B., GAUER, L., TOMAZ, J.P., CARDOSO, P.R. AND CARMELLO-GUERREIRO, S., 2007, The Arabidopsis AtbZIP9 protein fused to the VP16 transcriptional activation domain alters leaf and vascular development. Plant Sci. 172: 1148–1156.

SINGLA-PAREEK, S.L., REDDY, M.K. AND SOPORY, S.K., 2003, Genetic engineering of the glyoxalase pathway in tobacco leads to enhanced salinity tolerance. Proc. Natl. Acad. Sci. USA. 100: 14 672–14 677.

SIVAMANI, E., BAHIELDIN, A., WRAITH, J.M., AL-NIEMI, T., DYER, W.E., HO, T.H.D. AND QU, R., 2000, Improved biomass productivity and water use efficiency under water deficit conditions in transgenic wheat constitutively expressing the barley HVA1 gene. Plant Sci. 155:1-9.

SODERMAN, E., HJELLSTRO,M. M., FAHLESON, J. AND ENGSTRO, M.P., 1999, The HDZip gene ATHB6 in Arabidopsis is expressed in developing leaves, roots and carpels and up-regulated by water deficit conditions. Plant Mol Biol. 40:1073–1083.

SODERMAN, E., MATTSSON, J. AND ENGSTRO, M.P., 1996, The Arabidopsis homeobox gene Athb-7 is induced by water deficit and by abscisic acid. Plant J. 10:375–381.

SONGA, S., YING CHENA,B., MINGUI ZHAOA. AND WEN-HAO ZHANGA, 2012, A novel Medicago truncatula HD-Zip gene, MtHB2, is involved in abiotic stress responses. Environmental and Experimental Botany. 80 : 1– 9.

SOUER, E., VAN HOUWELINGEN, A., KLOOS, D., MOL, J. AND KOES, R., 1996, The no apical meristem gene of Petunia is required for pattern formation in embryos and flowers and is expressed at meristem and primordia boundaries. Cell. 85: 159–170.

SPEROTTO, R.A., RICACHENEVSKY, F.K., DUARTE, G.L., BOFF, T., LOPES, K. L., SPERB, E.R., GRUSAK, M.A., AND FETT, J.P., 2009, Identification of up-regulated genes in flag leaves during rice grain filling and characterization of OsNAC5, a new ABA-dependent transcription factor. Planta. 230: 985–1002.

SPOLLEN, W.G., LENOBLE, M.E., SAMUELS, T.D., BERNSTEIN, N., AND SHARP, R.E., 2000, Abscisic acid accumulation maintains maize primary root elongation at low water potentials by restricting ethylene production. Plant

Physiol. 122: 967–976.

SRIKANTHBABU, V., KUMAR, G., KRISHNAPRASAD, B.T., GOPALAKRISHNA, R., SAVITHA, M. AND UDAYAKUMAR, M., 2002, Identification of pea genotypes with enhanced thermotolerance using temperature induction response (TIR) technique. J Plant Physiol. 159:535-545.

STRACKE, R., WERBER, M. AND WEISSHAAR, B., 2001, The R2R3-MYB gene family in Arabidopsis thaliana. Curr. Opin. Plant Biol. 4: 447–456.

STRATHMANN, A., KUHLMANN, M., HEINEKAMP, T., DROGE-LASER, W., 2001, BZI-1 specifically heterodimerises with the tobacco bZIP transcription factors BZI-2, BZI-3/TBZF and BZI-4, and is functionally involved in flower development. Plant J. 28: 397–408.

STRIZHOV, N., ABRAHAM, E., OKRESZ, L., BLICKLING, S., ZILBERSTEIN, A., SCHELL, J., KONCZ, C. AND SZABADOS, L., 1997, Differential expression of two P5CS genes controlling proline accumulation during salt stress requires ABA and is regulated by ABA1, ABI1 and AXR2 in Arabidopsis. Plant J. 12:557–569.

SUGANO, S., KAMINAKA, H., RYBKA, Z., CATALA, R., SALINAS, J., MATSUI, K., OHME-TAKAGI, M. AND TAKATSUJI, H., 2003, Stress-responsive zinc finger gene ZPT2–3 plays a role in drought tolerance in petunia. The Plant

Journal. 36: 830–841.

SUN, C., PALMQVIST, S., OLSSON, H., BOREN, M., AHLANDSBERG, S. AND JANSSON, C., 2003, A novel WRKY transcription factor, SUSIBA2, participates in sugar signaling in barley by binding to the sugar-responsive elements of the iso1 promoter. Plant Cell. 15:2076-2092.

SUN, S.J.P., YU, F., CHEN, T.J., ZHAO, X.H., FANG, Y.Q., LI, S.F., SUI. AND TINY, 2008. a dehydration-responsive element (DRE)-binding protein-like transcription factor connecting the DRE- and ethylene-responsive element-mediated signalling pathways in Arabidopsis. J. Biol. Chem. 283 : 6261–6271.

SUN, T.P. AND GUBLER, F., 2004, Molecular mechanism of gibberellins signaling in plants. Annu. Rev. Plant Biol. 55: 197–223.

SUNDAR, A.S., VARGHESE, S.M., SHAMEER, K., KARABA, N., UDAYAKUMAR, M. AND SOWDHAMINI, M., 2008, STIF: Identification of stress-upregulated TF binding sites in Arabidopsis thaliana. Bioinformation. 2:431-437.

SUNDARESHA, S., MANOJ KUMAR, A., ROHINI, S., MATH, S. A., KESHAMMA, E., CHANDRASHEKAR, S. C. AND UDAYAKUMAR, M., 2009, Enhanced protection against two major fungal pathogens of groundnut, Cercospora

arachidicola and Aspergillus flavus in transgenic groundnut overexpressing a tobacco β 1–3 glucanase. Eur. J. Plant Pathol., 126: 497–508.

SZABADOS, L. AND SAVOURE, A., 2010, Proline: a multifunctional amino acid. Trends in Plant Science. 15: 89–97.

SZEKELY, G., ABRAHAM, E. AND CSEPLO, A., 2008, Duplicated P5CS genes of Arabidopsis play distinct roles in stress regulation and developmental control of proline biosynthesis. The Plant Journal. 53: 11–28.

TAHIR, M., BELMONTE, M.F., ELHITI, M., FLOOD, H. AND STASOLLA, C., 2008, Identification and characterization of PgHZ1, a novel homeodomain leucine-zipper gene isolated from white spruce (Picea glauca) tissue. Plant Physiol

Biochem. 6:1031-9.

TAKAHASHI, H., KAWAKATSU, T., WAKASA, Y., HAYASHI, S. AND TAKAIWA, F., 2012, A Rice Transmembrane bZIP Transcription Factor, OsbZIP39, Regulates the Endoplasmic Reticulum Stress Response. Plant Cell

Physiol. 53(1): 144–153

TAKASAKI, H., MARUYAMA, K., SATOSHI KIDOKORO, YUSUKE ITO, YASUNARI FUJITA, KAZUO SHINOZAKI, KAZUKO YAMAGUCHI-SHINOZAKI. AND KAZUO NAKASHIMA, 2010, The abiotic stress-responsive NAC-type transcription factor OsNAC5 regulates stress-inducible genes and stress tolerance in rice. Mol Genet. Genomics. 284:173–183.

TANG, N., ZHANG, H., LI, X., XIAO, J. AND XIONG, L., 2012, Constitutive activation of transcription factor OsbZIP46 improves drought tolerance in rice. Plant Physiol. 158(4):1755-68.

TATEDA, C., OZAKI, R., ONODERA, Y., TAKAHASHI, Y., YAMAGUCHI, K., BERBERICH, T., KOIZUMI, N. AND KUSANO, T., 2008, NtbZIP60, an endoplasmic reticulum-localized transcription factor, plays a role in the defense response against bacterial pathogens in Nicotiana tabacum. J. Plant Res. 121: 603–611.

THAPAR, N., KIM, A.K. AND CLARKE, S., 2001, Distinct patterns of expression but similar biochemical properties of protein L-isoaspartyl methyltransferase in higher plants. Plant Physiol. 125: 1023–1035.

THUROW, C., SCHIERMEYER, A., KRAWCZYK, S., BUTTERBRODT, T., NICKOLOV, K. AND GATZ, C., 2005, Tobacco bZIP transcription factor TGA2.2 and related factor TGA2.1 have distinct roles in plant defense responses and plant development. Plant J. 44: 100–113

TOLEDO-ORTIZ, G., HUQ, E., QUAIL, P.H., 2003, The Arabidopsis basic/helixloop- helix transcription factor family. Plant Cell. 15: 1749–1770.

TRAN, L.S., NAKASHIMA, K., SAKUMA, Y., SIMPSON, S.D., FUJITA, Y., MARUYAMA, K., FUJITA, M., SEKI, M., SHINOZAKI, K. AND YAMAGUCHI-SHINOZAKI, K., 2004, Isolation and functional analysis of Arabidopsis stress-inducible NAC transcription factors that bind to a drought responsive cis-element in the EARLY RESPONSIVE TO DEHYDRATION STRESS 1 promoter. Plant Cell. 16: 2481–2498.

TRAN, L.S.P., NAKASHIMA, K., SAKUMA, Y., OSAKABE, Y., QIN, F., SIMPSON, S.D., MARUYAMA, K., FUJITA, Y., SHINOZAKI, K. AND YAMAGUCHI-SHINOZAKI, K., 2007, Co-expression of the stress-inducible zinc finger homeodomain ZFHD1 and NAC TFs enhances expression of the ERD1 gene in Arabidopsis. Plant J. 49:46–63.

TRON, A.E., BERTONCINI, C.W., CHAN, R.L. AND GONZALEZ, D.H., 2002, Redox regulation of plant homeodomain transcription factors. J Biol Chem. 277:34800-7.

UAUY, C., DISTELFELD, A., FAHIMA, T., BLECHL, A. AND DUBCOVSKY, J., 2006, A NAC Gene regulating senescence improves grain protein, zinc, and iron content in wheat. Science. 314: 1298–1301.

UDVARDI, M. K., KAKAR, K., WANDREY, M., MONTANARI, M., MURRAY, J., ANDRIANKAJA, A., ZHANG, J-Y., BENEDITO, V., HOFER, J. M. I., CHUENG, F. AND TOWN, C. D., 2007, Legume transcription factors: global regulators of plant development and response to the environment. Plant

Physiol.144: 538-549.

UEGUCHI-TANAKA, M., ASHIKARI, M., NAKAJIMA, M., ITOH, H., KATOH, E., KOBAYASHI, M., CHOW, T.Y., HSING, Y.I.C., KITANO, H., YAMAGUCHI, I. AND MATSUOKA, M., 2005, Gibberellin Insensitive Dwarf1 encodes a soluble receptor for gibberellin. Nature. 437: 693–698.

UEGUCHI-TANAKA, M., HIRANO, K., KITANO, H. AND MATSUOKA, M., 2008, Release of the repressive activity of rice DELLA protein SLR1 by gibberellin does not require SLR1 degradation in the gid2 mutant. Plant Cell. 20: 2437–2446.

ÜLKER, B. AND SOMSSICH, I., 2004, WRKY transcription factors: from DNA binding towards biological function. Curr Opin Plant Biol. 7(5):491-498.

UMA, S., PRASAD, T. G. AND UDAYAKUMAR, M., 1995, Genetic variability in recovery growth and synthesis of stress proteins in response to polyethylene glycol and salt stress in finger millet. Ann. Bot. 76 (1): 43-49.

UNO, Y., FURIHATA, T., ABE, H., YOSHIDA, R., SHINOZAKI, K. AND YAMAGUCHI- SHINOZAKI, K., 2000, Arabidopsis basic leucine zipper transcription factors involved in an abscisic acid-dependent signal transduction pathway under drought and high-salinity conditions. Proc Natl Acad Sci USA. 97:11632–11637.

URANO, K., MARUYAMA, K. AND OGATA, Y., 2009, Characterization of the ABA-regulated global responses to dehydration in Arabidopsis by metabolomics. The

Plant Journal. 57: 1065–1078.

URWIN, P.E., MCPHERSON, M.J. AND ATKINSON, H.J., 1998, Enhanced transgenic plant resistance to nematodes by dual proteinase inhibitor constructs. Planta. 204: 472–479.

URWIN, P.E., ZUBKO, E.I. AND ATKINSON, H.J., 2002, The biotechnological application and limitation of IRES to deliver multiple defence genes to plant pathogens. Physiol. Mol. Plant Pathol. 61: 103–108.

VALENTE, M. A., FARIA, J. A., SOARES‑RAMOS, J. R., REIS, P. A., PINHEIRO, G. L., PIOVESAN, N. D., ET AL. 2009, The ER luminal binding protein (BiP) mediates an increase in drought tolerance in soybean and delays drought‑induced leaf senescence in soybean and tobacco. J. Exp. Bot. 60: 533‑546.

VALLIYODAN, B. AND NGUYEN, H.T., 2006, Understanding regulatory networks and engineering for enhanced drought tolerance in plants. Curr. Opin. Plant Biol. 9: 189–195.

VAN VERK, M.C., BOL, J.F., LINTHORST, H.J.M., 2011, WRKY Transcription Factors Involved in Activation of SA Biosynthesis Genes. BMC Plant Biol. 11:89

VANNINI, C., LOCATELLI, F., BRACALE, M., MAGNANI, E., MARSONI, M., OSNATO, M., MATTANA, M., BALDONI, E. AND CORAGGIO, I., 2004, Overexpression of the rice Osmyb4 gene increases chilling and freezing tolerance of Arabidopsis thaliana plants. The Plant Journal: 37: 115–127.

VANNINI, M., CAMPA, M., IRITI, M., GENGA, A., FAORO, F., CARRAVIERI, S., ROTINO, G.L., ROSSONI, M., SPINARDI, A., BRACALE, M., 2007, Evaluation of transgenic tomato plants ectopically expressing the rice Osmyb4

gene. Plant Science. 173: 231-239.

VEMANNA, R.S., CHANDRASHEKAR, B.K., HANUMANTHA RAO, H.M., SATHYANARAYANAGUPTA, S.K., SARANGI, S.K., NATARAJA, K.N., UDAYAKUMAR, M., SARANGI, S.K., KARABA, N.K. AND UDAYAKUMAR, M., 2012, A modified multisite gateway cloning strategy for consolidation of genes in plants. Mol Biotechnol. doi 10.1007/s12033-012-9499-6

VERA-ESTRELLA, R., BARKLA, B.J., GARCIA-RAMIREZ, L. AND PANTOJA, O., 2005, Salt stress in Thellungiella halophila activates Na+ transport mechanisms required for salinity tolerance. Plant Physiol. 139:1507-1517.

VIJ, S. AND TYAGI, A. K. 2007, Emerging trends in the functional genomics of the abiotic stress response in crop plants Plant Biotechnology Journal 5, pp. 1-20.

VILLA, S.T., XU, Q., DOWNIE, A.B., AND CLARKE, S.G. 2006, Arabidopsis protein repair L-isoaspartyl methyltransferases: Predominant activities at lethal temperatures. Physiol. Plant. 128: 581–592.

VOGEL, J. T., TAN B-C, MCCARTY, D. R. AND KLEE. H. J., 2008, The carotenoid cleavage dioxygenase 1 enzyme has broad substrate specificity, cleaving multiple carotenoids at two different bond positions. J. Biol. Chem. 283(17): 11364–11373.

VOLLBRECHT, E., 1991, The developmental gene Knotted-1 is a member of a maize homeobox gene family. Nature. 350: 241–243.

VROEMEN, C. W., MORDHORST, A. P., ALBRECHT, C., KWAAITAAL, M. AND DE VRIES, S. C., 2003, The cup-shaped cotyledon3 gene is required for boundary and shoot meristem formation in Arabidopsis. Plant Cell. 15: 1563-1577.

WALHOUT, A.J.M., SORDELLA, R., LU, X., HARTLEY, J.L., TEMPLE, G.F., BRASCH, M.A., THIERRY-MIEG, N. AND VIDAL, M., 2000, Protein interaction mapping in C. elegans using proteins involved in vulval development. Science. 287: 116–122.

WALSH, J. AND FREELING, M., 1999, The liguleless2 gene of maize functions during the transition from the vegetative to the reproductive shoot apex. Plant J. 19: 489–495.

WALSH, J., WATERS, C.A., FREELING, M., 1998, The maize gene liguleless2 encodes a basic leucine zipper protein involved in the establishment of the leaf bladesheath boundary. Genes Dev. 12: 208–218.

WANG, H., HAO, J. AND CHEN, X., 2007, Overexpression of rice WRKY89 enhances ultraviolet B tolerance and disease resistance in rice plants. Plant Molecular

Biology. 65: 799-815.

WANG, Q., GUAN, Y., WU, Y., CHEN, H., CHEN, F., CHU, C., 2008, Overexpression of a rice OsDREB1F gene increases salt, drought, and low temperature tolerance in both Arabidopsis and rice. Plant Molecular Biology 67: 589–602.

WANG, W., VINOCUR, B., SHOSEYOV, O. AND ALTMAN, A., 2004, Role of plant heatshock proteins and molecular chaperones in the abiotic stress response. Trends Plant Sci. 9:244-252.

WANG, Y. Y., YING, J., CHEN, X.C. AND WANG, 2004, Transgenic Arabidopsis overexpressing Mn-SOD enhanced salt-tolerance. Plant Sci. 167: 671-677.

WANG, Y., GAO, C., LIANG, Y., WANG, C., YANG, C., AND LIU, G., 2010, A novel bZIP gene from Tamarix hispida mediates physiological responses to salt stress in tobacco plants. J. Plant Physiol. 167(3): 222-30.

WANG, Y., HENRIKSSON, E., SÖDERMAN, E., HENRIKSSON, K.N., SUNDBERG, E., ENGSTRÖM, P., 2003, The Arabidopsis homeobox gene, ATHB16, regulates leaf development and the sensitivity to photoperiod in Arabidopsis. Dev Biol . 264: 228-39.

WANG, Y.J., ZHANG, Z.G., HE, X.J., ZHOU, H.L., WEN, Y.X., DAI, J.X., ZHANG, J.S. AND CHEN, S.Y., 2003, A rice transcription factor OsbHLH1 is involved in cold stress response. Theor Appl Genet. 107:1402–1409.

WANG, Y.J., ZHANG, Z.G.,HE, X.J., ZHOUHL, WEN, Y.X., DAI, J.X., ZHANG, J.S. AND CHEN, S.Y., 2003, A rice transcription factor OsbHLH1 is involved in cold stress response. Theor Appl Genet. 107: 1402–1409.

WEIGEL, D. AND THE APETALA2, 1995, domain is related to a novel type of DNA binding domain. Plant Cell. 7 : 388–389.

WELTMEIER, F., EHLERT, A., MAYER, C.S., DIETRICH, K. AND WANG, X., 2006, Combinatorial control of Arabidopsis proline dehydrogenase transcription by specific heterodimerisation of bZIP transcription factors. EMBO J. 25: 3133–3143.

WESTGATE, M.E., AND BOYER, J.S., 1985, Osmotic adjustment and the inhibition of leaf, root, stem and silk growth at low water potentials in maize. Planta. 164: 540–549.

WHITE. R.G. AND KIRKEGAARD, J.A., 2010, The distribution and abundance of wheat roots in a dense, structured subsoil – implications for water uptake. Plant

Cell Environ. 33:133–148.

WHITTAKER, A. ADRIANA, B., AND JILL, F., 2001, Changes in leaf hexokinase activity and metabolite levels in response to drying in the desiccation tolerant species, Sporobolus stapfianus and Xerophyta viscosa. J Exp Bot. 52(358):961-969.

WIDODO, PATTERSON, J.H., NEWBIGIN, E., TESTER, M., BACIC, A. AND ROESSNER, U., 2009, Metabolic responses to salt stress of barley (Hordeum vulgare L.) cultivars, Sahara and Clipper, which differ in salinity tolerance. Journal of Experimental Botany 60: 4089–4103.

WILKINSON, S. AND DAVIES, W.J., 2002, ABA-based chemical signalling: the co-ordination of responses to stress in plants. Plant Cell Environ. 25:195–210.

WINICOV, I. AND BASTOLA, D R., 1999, Transgenic Overexpression of the Transcription Factor Alfin1 Enhances Expression of the Endogenous MsPRP2

Gene in Alfalfa and Improves Salinity Tolerance of the Plants. Plant

Physiol.120(2): 473–480.

WISE, M. J. AND TUNNACLIFFE, A., 2004, POPP the question: what do LEA proteins do? Trends Plant Sci. 9: 13–17.

WU, X. 2009, Enhanced heat and drought tolerance in transgenic rice seedlings overexpressing OsWRKY11 under the control of HSP101 promoter. Plant Cell

Rep. 28: 21–30.

XIA, N., ZHANG, G., LIU, X.Y., DENG, L., CAI, G.L., ZHANG, Y., WANG, X.J., ZHAO, J., HUANG, L.L. AND KANG, Z.S., 2010, Characterization of a novel wheat NAC transcription factor gene involved in defense response against stripe rust pathogen infection and abiotic stresses. Mol Biol Rep. 37(8): 3703-12.

XIANG, Y., TANG, N., DU, H., YE, H. AND XIONG, L., 2008, Charaterization of OsbZIP23 as a key player of the basic leucine zipper transcription factor family for conferring abscisic acid sensitivity and salinity and drought tolerance in rice. Plant Physiology. 148: 1938–1952.

XIAO, H. AND LIS, J.T., 1988, Germline transformation used to define key features of heat-shock response elements. Science. 239:1139-1142.

XIAO, H., PERISIC, O. AND LIS, J.T., 1991, Cooperative binding of Drosophila heat shock factor to arrays of a conserved 5 bp unit. Cell. 64:585-593.

XIE, Q., FRUGIS, G., COLGAN, D. AND CHUA, N.H., 2000, Arabidopsis NAC1 transduces auxin signal downstream of TIR1 to promote lateral root development. Genes Dev 2000; 14:3024-36.

XIE, Q.A.P., SANZ-BURGOS, H.. GUO, J.A., GARCÍA, C., GUTIÉRREZ, AND GRAB, 1999, proteins, novel members of the NAC domain family, isolated by their interaction with a geminivirus protein. Plant Mol. Biol. 39: 647–656.

XU, D., DUAN, X., WANG, B., HONG, B., HO T-HD AND WU, R., 1996, Expression of a late embryogenesis abundant protein gene, HVA1, from barley confers tolerance to water deficit and salt stress in transgenic rice. Plant Physiol. 110:249-257.

XU, K. X., XU, T., FUKAO, P., CANLAS, R., MAGHIRANG-RODRIGUEZ, S., HEUER, A.M., ISMAIL, J., BAILEY-SERRES, P.C., RONALD, D.J. AND MACKILL, 2006, Sub1A is an ethylene-response-factor like gene that confers submergence tolerance to rice. Nature. 442: 705–708.

XU, Q.J. AND CUI, C.R., 2007, Genetic transformation of OSISAP1 gene to onion (Allium cepa L.) mediated by amicroprojectile bombardment. Journal of Plant

Physiology and Molecular Biology. 33: 188-96.

XU, X., CHEN, C., FAN, B. AND CHEN, Z., 2006, Physical and functional interactions between pathogen-induced Arabidopsis WRKY18, WRKY40, and WRKY60 transcription factors. Plant Cell. 18:1310–1326.

XU, Z.S., NI, Z.Y., LI, Z.Y., LI, L.C., CHEN, M., GAO, D.Y., YU, X.D., LIU, P. AND MA, Y.Z., 2009. Isolation and functional characterization of HvDREB1: a gene encoding a dehydration-responsive element binding protein in Hordeum vulgare. Journal of Plant Research. 122: 121–130.

XUE, G.P. AND C.W. LOVERIDGE, 2004, HvDRF1 is involved in abscisic acid-mediated gene regulation in barley and produces two forms of AP2 transcriptional activators, interacting preferably with a CT-rich element. Plant J. 37 : 326–339.

YAMADA, M., MORISHITA, H., URANO, K., SHIOZAKI, N., YAMAGUCHI- SHINOZAKI, K., SHINOZAKI, K., YOSHIBA, Y., 2005, Effects of free proline accumulation in petunias under drought stress. Journal of Experimental Botany. 56: 1975–1981.

YAMAGUCHI-SHINOZAKI, K. AND SHINOZAKI, K., 1994, A novel cis-acting element in an Arabidopsis gene is involved in responsiveness to drought, low-temperature, or high-salt stress. Plant Cell. 6 : 251–264.

YAMAGUCHI-SHINOZAKI, K., AND SHINOZAKI, K., 1993, Characterization of the expression of a desiccation-responsive rd29 gene of Arabidopsis thaliana and analysis of its promoter in transgenic plants. Mol. Gen. Genet. 236: 331–340.

YAMAMOTO, M.P., ONODERA, Y., TOUNO, S.M. AND TAKAIWA, F., 2006, Synergism between RPBF Dof and RISBZ1 bZIP activators in the regulation of rice seed expression genes. Plant Physiol. 141: 1694–1707.

YAMASAKI, K., ET AL., 2005, Solution structure of an Arabidopsis WRKY DNA binding domain. Plant Cell 17: 944–956.

YAMBAO, E.B., INGRAM, K.T. AND REAL, J.G., 1992, Root xylem influence on the water rela- tions and drought resistance of rice. J. Exp. Bot. 43: 925–932.

YANG, L., ZHENG, B., MAO, C., QI, X., LIU, F. AND WU, P., 2004, Analysis of transcripts that are differentially expressed in three sectors of the rice root system under water deficit. Mol. Genet. Genomics. 272: 433–442.

YANG, Z.Y., WU, Y., LI, H.Q., LING, C., CHU, AND OSMT1A, 2009, a type 1 metallothionein, plays the pivotal role in zinc homeostasis and drought tolerance in rice. Plant Mol. Biol. 70: 219-229.

YANHUI, C., XIAOYUAN, Y., KUN, H., MEIHUA, L., JIGANG, L., ZHAOFENG, G., ZHIQIANG, L., YUNFEI, Z., XIAOXIAO, W., XIAOMING, Q., YUNPING, S., XIAOHUI, D., JINGCHU, L., XING-WANG, D., ZHANGLIANG, C., HONGYA, G. AND LI-JIA, Q., 2006, The MYB transcription factor superfamily of Arabidopsis: expression analysis and phylogenetic comparison with the rice MYB family. Plant Molecular Biology. 60: 107–124.

YE X.D., AL BABILI, S., KLOTI, A., ZHANG, J., LUCCA, P., BEYER, P. AND POTRYKUS, I., 2000, Engineering the provitamin A (beta-carotene) biosynthetic pathway into (carotenoid-free) rice endosperm. Science. 287: 303–305.

YI, K., WU, Z., ZHOU, J., DU, L., GUO, L., WU, Y. AND WU, P., 2005, OsPTF1, a novel transcription factor involved in tolerance to phosphate starvation in rice. Plant Physiol. 138: 2087–2096.

YING, S., ZHANG D-F., FU, J., SHI, Y-S., SONG, Y-C., WANG, T-Y. AND LI, Y., 2012, Cloning and characterization of a maize bZIP transcription factor, ZmbZIP72, confers drought and salt tolerance in transgenic Arabidopsis. Planta. 235: 253–266.

YOKOTANI, N., ICHIKAWA, T., KONDOU, Y., MATSUI, M., HIROCHIKA, H., IWABUCHI, M. AND ODA, K., 2009, Tolerance to various environmental stresses conferred by the salt-responsive rice gene ONAC063 in transgenic Arabidopsis. Planta. 229: 1065–1075.

YOKOTANI, N., ICHIKAWA, T., KONDOU, Y., MATSUI, M., HIROCHIKA, H., IWABUCHI, M., ODA, K., 2008, Expression of rice heat stress transcription factor OsHsfA2e enhances tolerance to environmental stresses in transgenic Arabidopsis. Planta. 227: 957–967.

YOSHIDA, H., MATSUI, T., YAMAMOTO, A., OKADA, T. AND MORI, K. 2001, XBP1 mRNA is induced by ATF6 and spliced by IRE1 in response to ER stress to produce a highly active transcription factor. Cell. 107: 881–891.

YU, H., CHEN, X., HONG, Y-Y., WANG, Y., XU, P., KE, S-D., LIU, H-Y., ZHU, J-K., OLIVER, D. J. AND XIANG, C-B., 2008, Activated expression of an Arabidopsis HD-START protein confers drought tolerance with improved root system and reduced stomatal density. Plant Cell, 20: 1134–1151.

ZELLER, G. ET AL. 2009, Stress-induced changes in the Arabidopsis thaliana transcriptome analyzed using whole-genome tiling arrays. Plant J. 58: 1068–1082.

ZHANG, H., OHYAMA, K., BOUDET, J., CHEN, Z., YANG, J., ZHANG, M., MURANAKA, T., MAUREL, C., ZHU, J-K. AND GONGA, Z., 2008, Dolichol Biosynthesis and Its Effects on the Unfolded Protein Response and Abiotic Stress Resistance in Arabidopsis. Plant Cell. 20: 1879–1898.

ZHANG, J. Z., CREELMAN, R. A. AND ZHU, J. K., 2004, From laboratory to field. Using information from Arabidopsis to engineer salt, cold, and drought tolerance in crops. Plant Physiol. 135: 615–621.

ZHANG, M., HENQUET, M., CHEN, Z., ZHANG, H., ZHANG, Y., REN, X., VAN DER KROL, S., GONNEAU, M., BOSCH, D. AND GONG, Z., 2009, LEW3, encoding a putative a-1,2-mannosyltransferase (ALG11) in N-linked glycoprotein, plays vital roles in cell-wall biosynthesis and the abiotic stress response in Arabidopsis thaliana. Plant J. 60: 983–999.

ZHANG, X., WANG, L., MENG, H., WEN, H., FAN, Y. AND ZHAO, J., 2011, Maize ABP9 enhances tolerance to multiple stresses in transgenic Arabidopsis by modulating ABA signaling and cellular levels of reactive oxygen species. Plant

Mol Biol. 75 (4-5): 365-378.

ZHANG, X., WOLLENWEBER, B., JIANG, D., LIU, F. AND ZHAO, J., 2008, Water deficits and heat shock effects on photosynthesis of a transgenic Arabidopsis thaliana constitutively expressing ABP9, a bZIP transcription factor. J. Exp. Bot. 59: 839–848.

ZHAO, J. Z., CAO, J., LI, Y. X., COLLINS, H. L., ROUSH, R. T., EARLE, E. D. AND SHELTON, A. M., 2003, Transgenic plants expressing two Bacillus

thuringiensis toxins delay insect resistance evolution. Nat. Biotechnol. 21: 1493–1497.

ZHENG, X., CHEN, B., LU, G. AND HAN, B., 2009, Overexpression of a NAC transcription factor enhances rice drought and salt tolerance. Biochem Biophys

Res Commun. 379: 985-9.

ZHENG, Z., MOSHER, S. L., FAN, B., KLESSIG, D. F. AND CHEN, Z., 2007, Functional analysis of Arabidopsis WRKY25 TF in plant defense against Pseudomonas syringae. BMC Plant Biol. 7: 2.

ZHENG, Z., QAMAR, S. A., CHEN, Z. AND MENGISTE, T., 2006, Arabidopsis WRKY33 transcription factor is required for resistance to necrotrophic fungal pathogens. Plant J. 48: 592–605.

ZHONG, R., DEMURA T. AND YE, Z. H., 2006, SND1, a NAC domain transcription factor, is a key regulator of secondary wall synthesis in fibers of Arabidopsis, Plant Cell. 18: 3158–3170.

ZHOU, J., LI, F., WANG, J. L., MA, Y., CHONG, K. AND XU, Y. Y., 2009, Basic helix-loop- helix transcription factor from wild rice (OrbHLH2) improves tolerance to salt- and osmotic stress in Arabidopsis. J. Plant Physiol. 166: 1296–1306.

ZHOU, Q. Y., TIAN, A. G., ZOU, H. F., XIE, Z. M., LEI, G., HUANG, J., WANG, C. M., WANG, H. W., ZHANG, J. S. AND CHEN, S. Y., 2008, Soybean WRKY-type TF genes, GmWRKY13, GmWRKY21, and GmWRKY54, confer differential

tolerance to abiotic stresses in transgenic Arabidopsis plants. Plant Biotechnol. J. 6: 486-503.

ZHU, J. K., 2001, Cell signaling under salt, water and cold stresses. Curr. Opin. Plant Biol. 4: 401–406.

ZHU, J. K., 2002, Salt and drought stress signal transduction in plants. Annu. Rev. Plant.

Biol. 53:247-273.

ZOU, M., GUAN, Y., REN, H., ZHANG, F. AND CHEN, F., 2008 A bZIP transcription factor, OsABI5, is involved in rice fertility and stress tolerance. Plant. Mol. Biol. 66: 675–683.