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Antimicrobial Susceptibility Testing Disk Diffusion Babak Valizadeh,DCLS [email protected] 1390 / 09 / 10 2011.12.01 1
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Page 1: Antimicrobial Susceptibility Testing Disk Diffusion · Should problems with QC of sulfonamides and trimethoprim occur, it might be necessary to check the MHA. To evaluate a lot of

Antimicrobial Susceptibility Testing

Disk Diffusion

Babak Valizadeh,DCLS

[email protected]

1390 / 09 / 10

2011.12.01

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Page 3: Antimicrobial Susceptibility Testing Disk Diffusion · Should problems with QC of sulfonamides and trimethoprim occur, it might be necessary to check the MHA. To evaluate a lot of

CLSI - M02-A10 / 2009

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CLSI – M100-S21 / 2011

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Antimicrobial Susceptibility Testing

CLSI : Clinical and Laboratory Standards Institute

CLSI (2005) , formerly NCCLS (2004)

Antimicrobial Susceptibility Testing (AST) vs. Antibiogram

Susceptible vs. Sensitive

EUCAST :European Committee on Antimicrobial Susceptibility Testing

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Terminology & Definitions

Susceptible – a category that implies

that isolates are inhibited by the usually

achievable concentrations of

antimicrobial agent when the

recommended dosage is used for the site

of infection

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Terminology & Definitions

Intermediate – a category that

includes isolates with antimicrobial

agent MICs that approach usually

attainable blood and tissue levels

and for which response rates may be

lower than for susceptible isolates.

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Terminology & Definitions

Intermediate – implies clinical efficacy

in body sites where the drugs are

physiologically concentrated (eg,

quinolones and β-lactams in urine) or

when a higher than normal dosage of a

drug can be used (eg, β-lactams)

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Terminology & Definitions

Intermediate –This category also

includes a buffer zone, which should

prevent small, uncontrolled, technical

factors from causing major

discrepancies in interpretations,

especially for drugs with narrow

pharmacotoxicity margins

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Terminology & Definitions

Resistant – a category that

implies that isolates are not

inhibited by the usually

achievable concentrations of the

agent with normal dosage

schedules 11

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Terminology & Definitions

Resistant –and/or that demonstrate

zone diameters that fall in the range

where specific microbial resistance

mechanisms (eg, β-lactamases) are

likely, and clinical efficacy of the agent

against the isolate has not been reliably

shown in treatment studies

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Antimicrobial Resistance

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Antimicrobial Resistance

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Antimicrobial Resistance

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Antimicrobial Resistance

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Proposed definitions of MDR/XDR/PDR bacteria

MDR : Multidrug Resistant Bacteria

XDR : Extensively Drug Resistant Bacteria

PDR : Pan Drug Resistant Bacteria

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Terminology & Definitions

Nonsusceptible– a category used for organisms

that have only a susceptible interpretive category,

but not intermediate or resistant interpretive

categories (ie, susceptible-only interpretive

category).

A susceptible-only interpretive category may be applied

to new antimicrobial agents for which no resistant

isolates have been encountered at the time the initial

interpretive criteria are determined..

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Terminology & Definitions

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Indications for Performing Susceptibility Tests

Some organisms have predictable

susceptibility to antimicrobial agents,

and empiric therapy for these

organisms is widely accepted (eg, the

continued susceptibility of

Streptococcus pyogenes to penicillin)

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Indications for Performing Susceptibility Tests

Susceptibility tests are also

important in studies of the

epidemiology of resistance

In studies of new antimicrobial

agents

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Indications for Performing Susceptibility Tests

Isolated colonies of each type of organism that may be

pathogenic should be selected

Mixtures of different types of microorganisms should

not be tested on the same susceptibility test plate

When the specimen contains mixed growth or normal

flora susceptibility tests are often unnecessary and the

results may be misleading

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Suggested Guidelines for Routine and Selective Testing and Reporting

Group A are considered

appropriate for inclusion in a

routine, primary testing panel

and for routine reporting of

results for the specified

organism groups

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Suggested Guidelines for Routine and Selective Testing and Reporting

Group B comprises agents that

may warrant primary testing.

However, report the results

selectively, such as when the

organism is resistant to agents of

the same class, as in Group A 24

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Suggested Guidelines for Routine and Selective Testing and Reporting

Group B- Other indications for reporting the

result might include a selected specimen source

(eg, a third-generation cephalosporin for enteric

bacilli from cerebrospinal fluid [CSF] or

trimethoprim-sulfamethoxazole for urinary tract

isolates); a polymicrobial infection; infections

involving multiple sites; cases of patient allergy,

intolerance, or failure to respond to an agent in

Group A

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Suggested Guidelines for Routine and Selective Testing and Reporting

Group C comprises alternative or

supplemental antimicrobial agents that

may require testing in those institutions

that harbor endemic or epidemic strains

resistant to several of the primary drugs

(especially in the same class [eg, β-

lactams or aminoglycosides])

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Suggested Guidelines for Routine and Selective Testing and Reporting

Group C - for treatment of patients

allergic to primary drugs; for treatment

of unusual organisms (eg,

chloramphenicol for extraintestinal

isolates of Salmonella spp.); or for

reporting to infection control as an

epidemiologic aid.

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Suggested Guidelines for Routine and Selective Testing and Reporting

Group U lists certain antimicrobial agents (eg,

nitrofurantoin and certain quinolones) that are

used only or primarily for treating urinary tract

infections; these agents should not be routinely

reported against pathogens recovered from other

sites of infection. Other agents with broader

indications may be included in Group U for

specific urinary pathogens (eg, Pseudomonas

aeruginosa).

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Suggested Guidelines for Routine and Selective Testing and Reporting

Group O (“other”) includes

agents that have a clinical

indication for the organism

group, but are generally not

candidates for routine testing

and reporting in the US 29

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Suggested Guidelines for Routine and Selective Testing and Reporting

Group Inv. (“investigational”)

agents are undergoing clinical

investigation for the organism

group and have not yet been

approved by the FDA for use in

the US 30

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Reagents for the Disk Diffusion Test

.

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Mueller-Hinton Agar/ MHA

Mueller-Hinton agar (MHA) the best for routine susceptibility

testing of nonfastidious bacteria for the following reasons :

It shows acceptable batch-to-batch reproducibility for

susceptibility testing

It is low in inhibitors that affect sulfonamide, trimethoprim,

and tetracycline susceptibility test results

It supports satisfactory growth of most nonfastidious pathogens

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Mueller-Hinton Agar/ MHA

Although MHA is generally reliable for

susceptibility testing, results obtained with some

batches may, on occasion, vary significantly

If a batch of medium does not support adequate

growth of a test organism, zones obtained in a

disk diffusion test are usually larger than

expected and may exceed the acceptable QC

limits

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Mueller-Hinton Agar - Preparation

Immediately after autoclaving, allow the

agar to cool in a 45 °C to 50 °C water bath

Pour the freshly prepared and cooled

medium into glass or plastic, flat-bottomed

petri dishes on a level, horizontal surface to

give a uniform depth of approximately 4

mm.

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Mueller-Hinton Agar - Preparation

This corresponds to 60 mL to 70 mL of medium for

plates with a diameter of 150 mm and 25 mL to 30 mL

for plates with a diameter of 100 mm

Use the plates within seven days after preparation

unless adequate precautions, such as wrapping in

plastic, are taken to minimize drying of the agar

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Page 36: Antimicrobial Susceptibility Testing Disk Diffusion · Should problems with QC of sulfonamides and trimethoprim occur, it might be necessary to check the MHA. To evaluate a lot of

Mueller-Hinton Agar / pH

The agar medium should have a pH between 7.2

and 7.4 at room temperature

Check the pH of each batch of MHA when the

medium is prepared

The pH must therefore be checked after gelling

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Mueller-Hinton Agar / pH

The exact method used depends largely on the type of

equipment available in the laboratory

Macerate enough agar to submerge the tip of a pH electrode

Allow a small amount of agar to solidify around the tip of a pH

electrode in a beaker or cup

Use a surface electrode

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pH meter Electrodes

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pH meter Electrodes

A spherical shaped bulb will provide 95% response in less than one

second

A hemispherical shaped bulb is a stronger shape mechanically and

slightly slower response. These shapes are often used in a fully exposed

manner

A flat measuring surface is the most durable of all the shapes. It makes

good sample contact, is easily cleaned, is very strong mechanically but has

the slowest speed of response 95% in less than 5 seconds

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Page 40: Antimicrobial Susceptibility Testing Disk Diffusion · Should problems with QC of sulfonamides and trimethoprim occur, it might be necessary to check the MHA. To evaluate a lot of

Mueller-Hinton Agar / pH

If the pH is less than 7.2, certain drugs will

appear to lose potency (eg, aminoglycosides

and quinolones and macrolides), while other

agents may appear to have excessive activity

(eg, tetracyclines)

If the pH is greater than 7.4, the opposite

effects can be expected

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Mueller-Hinton Agar / Moisture

If, just before use, excess surface

moisture is present on the plates, place

them in an incubator (35 °C) or a

laminar flow hood at room temperature

with lids ajar until excess surface

moisture is removed by evaporation

(usually 10 to 30 minutes)

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Mueller-Hinton Agar / Moisture

The surface of the plate should be

moist, but no droplets of moisture

should be apparent on the surface of

the medium or on the petri dish

covers when the plates are

inoculated

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MHA / Effects of Thymidine or Thymine

Mueller-Hinton agar containing excessive

amounts of thymidine or thymine can

reverse the inhibitory effect of sulfonamides

and trimethoprim, thus yielding smaller and

less distinct zones, or even no zone at all,

which may result in false-resistance reports.

Use MHA that is as low in thymidine

content as possible

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MHA / Effects of Thymidine or Thymine

Should problems with QC of sulfonamides and

trimethoprim occur, it might be necessary to check the

MHA.

To evaluate a lot of MHA, Enterococcus faecalis

ATCC® 29212 or, alternatively, E. faecalis ATCC®

33186, may be tested with trimethoprim-

sulfamethoxazole disks. Satisfactory media provide

essentially clear, distinct zones of inhibition ≥ 20 mm.

Unsatisfactory media produce no zone of inhibition,

growth within the zone, or a zone of < 20 mm

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MHA / Effects of Variation in Divalent Cations

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Effects of Variation in Divalent Cations

Variation in divalent cations, principally

magnesium and calcium, affects results of

aminoglycoside and tetracycline tests with P.

aeruginosa strains. Excess cation content

reduces zone sizes, whereas low cation

content may result in unacceptably large

zones of inhibition.

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Effects of Variation in Divalent Cations

Excess zinc ions may reduce

zone sizes of carbapenems.

Performance tests with each lot

of MHA must conform to the

control limits

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Storage of Antimicrobial Disks

Refrigerate the cartridges at 8 °C or below or freeze at −14 °C or below until needed. Do not store the disks in a self-defrosting freezer

Sealed packages of disks that contain drugs from the B-lactam class should be stored frozen, except for a small working supply, which may be refrigerated for at most one week.

Some labile agents (e.g., imipenem and clavulanic acid combinations) may retain greater stability if stored frozen until the day of use.

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Storage of Antimicrobial Disks

Remove the sealed packages containing disk cartridges

from the refrigerator or freezer one to two hours before

use, so they may equilibrate to room temperature before

opening. This minimizes the amount of condensation

that occurs when warm air contacts cold disks

Once a cartridge of disks has been removed from its

sealed package, place it in a tightly sealed, desiccated

container for storage

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Turbidity Standard for Inoculum Preparation

0.5 McFarland Turbidity Standard

Prepare a 0.048 mol/L BaCl2 (1.175% w/v BaCl2•2H2O) stock

solution

Prepare a 0.18 mol/L (0.36 N) H2SO4 (1% v/v) stock solution

With constant stirring to maintain a suspension, add 0.5 mL of

the BaCl2 solution to 99.5 mL of the H2SO4 stock solution

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0.5 McFarland Turbidity Standard

Verify the correct density of the turbidity standard by

measuring absorbance using a spectrophotometer with a 1-cm

light path and matched cuvettes.

The absorbance at 625 nm should be 0.08 to 0.13 for the 0.5

McFarland standard

Transfer the barium sulfate suspension in 4- to 6-mL aliquots

into screw-cap tubes of the same size as those used for

standardizing the bacterial inoculum

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0.5 McFarland Turbidity Standard

Tightly seal the tubes and store in the dark at room temperature

Vigorously agitate the barium sulfate turbidity standard on a

vortex mixer before each use and inspect for a uniformly turbid

appearance

Replace the standard if large particles appear

The barium sulfate standards should be replaced or their

densities verified monthly

Mix latex particle suspensions by inverting gently, not on a

vortex mixer

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Inoculum Preparation

Direct Colony Suspension Method

The direct colony suspension method is the most convenient method for

inoculum preparation

Prepare the inoculum by making a direct broth or saline suspension of

isolated colonies selected from an 18- to 24-hour agar plate (a

nonselective medium, such as blood agar, should be used)

Adjust the turbidity of the suspension to achieve a turbidity equivalent to a

0.5 McFarland standard

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Inoculum Preparation

Direct Colony Suspension Method

This results in a suspension containing approximately 1 to 2 x

10 8 CFU/mL for E. coli ATCC® 25922

To perform this step properly, either a photometric device can

be used or, if done visually, adequate light is needed to visually

compare the inoculum tube and the 0.5 McFarland standard

against a card with a white background and contrasting black

lines.

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Compare inoculum tube and 0.5 McFarland

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Photometric Device

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Inoculum Preparation

Growth Method

The growth method can be used alternatively and is sometimes

preferable when colony growth is difficult to suspend directly

and a smooth suspension cannot be made

It can also be used for nonfastidious organisms (except

staphylococci) when fresh (24-hour) colonies, as required for

the direct colony suspension method, are not available

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Inoculum Preparation / Growth Method

Select at least three to five well-isolated colonies

of the same morphologic type from an agar plate

culture

Touch the top of each colony with a loop or

sterile swab and transfer the growth into a tube

containing 4 mL to 5 mL of a suitable broth

medium, such as tryptic soy broth

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Inoculum Preparation / Growth Method

Incubate the broth culture at 35 °C until it achieves or

exceeds the turbidity of the 0.5 McFarland standard

(usually two to six hours)

Adjust the turbidity of the actively growing broth

culture with sterile saline or broth to achieve a turbidity

equivalent to a 0.5 McFarland standard

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Inoculation of Test Plates

Optimally, within 15 minutes after adjusting the

turbidity of the inoculum suspension, dip a sterile

cotton swab into the adjusted suspension

Rotate the swab several times and press firmly

on the inside wall of the tube above the fluid

level. This removes excess fluid from the swab

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Inoculation of Test Plates

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Inoculation of Test Plates

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Inoculation of Test Plates

Inoculate the dried surface of an MHA plate by streaking the

swab over the entire sterile agar surface

Repeat this procedure by streaking two more times, rotating the

plate approximately 60° each time to ensure an even

distribution of inoculum. As a final step, swab the rim of the

agar

The lid may be left ajar for three to five minutes, but no more

than 15 minutes, to allow for any excess surface moisture to be

absorbed before applying the drug-impregnated disks

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Application of Disks to Inoculated Agar Plates

Each disk must be pressed down to ensure

complete contact with the agar surface

Disks must be distributed evenly so they are

no closer than 24 mm from center to center

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Application of Disks to Inoculated Agar Plates

Ordinarily, no more than 12 disks should be

placed on one 150-mm plate, or more than five

disks on a 100-mm plate

It is best to place disks that give predictably small

zones (eg, gentamicin and vancomycin) next to

those that give larger zones (eg, cephalosporins)

in an effort to avoid overlapping zones

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Application of Disks to Inoculated Agar Plates

If disks are placed too close to the edge of the plate, the zones

may not be fully round with some drugs

Because some of the drug diffuses almost instantaneously, a

disk should not be relocated once it has come into contact with

the agar surface

Invert the plates and place in an incubator set to 35 ± 2 °C

(testing at temperatures above 35 °C may not detect MRS)

within 15 minutes after the disks are applied

Do not stack plates more than six high in the incubator

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Reading Plates and Interpreting Results

After 16 to 18 hours of incubation examine each plate

If the plate was satisfactorily streaked, and the inoculum was

correct, the resulting zones of inhibition will be uniformly

circular

If individual colonies are apparent, the inoculum was too light

and the test must be repeated. Measure the diameters of the

zones of complete inhibition including the diameter of the disk

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Reading Plates and Interpreting Results

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Reading Plates and Interpreting Results

Measure the zones to the nearest whole millimeter,

using sliding calipers or a ruler, which is held on the

back of the inverted petri plate

Hold the petri plate a few inches above a black,

nonreflecting background illuminated with reflected

light

71

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Reading Plates and Interpreting Results

72

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Reading Plates and Interpreting Results

Exceptions

If blood was added to the agar base (as with streptococci),

measure the zones from the upper surface of the agar

illuminated with reflected light and with the cover removed

Zone of growth inhibition should be measured, not the zone of

inhibition of hemolysis

If testing oxacillin or vancomycin against Staphylococcus spp.

or vancomycin against Enterococcus spp., 24 hours of

incubation are required before reporting as susceptible

73

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Reading Plates and Interpreting Results

Exceptions

Use transmitted light (plate held up to light) to examine

the oxacillin and vancomycin zones for light growth of

resistant colonies within apparent zones of inhibition

Any discernable growth within the zone of inhibition is

indicative of oxacillin or vancomycin resistance

74

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Reading Plates and Interpreting Results

75

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Reading Plates and Interpreting Results

If cefoxitin is tested against Staphylococcus spp., read

the zone diameters with reflected, not transmitted, light

at 16 to 18 hours

If linezolid is tested against Staphylococcus spp., read

the zone diameters with transmitted light

76

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Reading Plates and Interpreting Results

The zone margin should be considered the area

showing no obvious, visible growth that can be

detected with the unaided eye.

Ignore faint growth of tiny colonies that can be

detected only with a magnifying lens at the edge

of the zone of inhibited growth

77

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78

Reading Plates and Interpreting Results

NO yes

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Reading Plates and Interpreting Results

However, when discrete colonies grow within a

clear zone of inhibition, the test should be

repeated with a pure culture or subculture of a

single colony from the primary culture plate

If discrete colonies continue to grow within the

zone of inhibition, measure the colony-free inner

zone

79

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Reading Plates and Interpreting Results

80

Yes

No

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Reading Plates and Interpreting Results

Strains of Proteus spp. may swarm into areas of

inhibited growth around certain antimicrobial

agents

With Proteus spp., ignore the thin veil of

swarming growth in an otherwise obvious zone of

inhibition

81

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Reading Plates and Interpreting Results

82

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Reading Plates and Interpreting Results

With trimethoprim and the sulfonamides,

antagonists in the medium may allow some slight

growth;

Therefore, disregard slight growth (20% or less

of the lawn of growth), and measure the more

obvious margin to determine the zone diameter

83

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84

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85

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Reading Plates and Interpreting Results

86

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Ciprofloxacin is more active than Nalidixic

87

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Reading Plates and Interpreting Results

88

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Reading Plates and Interpreting Results

89

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Reading Plates and Interpreting Results

90

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D-Test

91

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92

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Quality Control and Quality

Assurance Procedures .

93

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Quality Control and Quality Assurance Procedures

In antimicrobial susceptibility testing, QC includes the procedures to

monitor the performance of a test system to ensure reliable results

This is achieved by, but not limited to, the testing of QC strains with

known susceptibility to the antimicrobial agents tested

The precision (repeatability) and accuracy of susceptibility test procedures

The performance of reagents used in the tests

The performance of persons who carry out the tests and read the results

94

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Selection of Quality Strains for Quality Control and Quality Assurance

95

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Selection of Quality Strains for Quality Control and Quality Assurance

96

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Selection of Quality Strains for Quality Control and Quality Assurance

97

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Storing and Testing Quality Control Strains

For prolonged storage, maintain stock cultures at −20

°C or below (preferably at ≤ −60 °C or below or in

liquid nitrogen) in a suitable stabilizer (eg, 50% fetal

calf serum in broth, 10% to 15% glycerol in tryptic soy

broth, defibrinated sheep blood, or skim milk) or

In a freeze-dried state without significant risk of

altering their antimicrobial susceptibility

98

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Storing and Testing Quality Control Strains

Subculture frozen or freeze-dried stock cultures

onto appropriate media (eg, tryptic soy or blood

agar for nonfastidious strains)

Subculture frozen or lyophilized cultures twice

before use in testing.

The second subculture is referred to as Day 1

working culture

99

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Storing and Testing Quality Control Strains

Store subcultures at 2 °C to 8 °C or as appropriate for the

organism type

Prepare working cultures by subculturing the QC strains onto

agar plates to obtain isolated colonies for testing. Prepare a

new working culture each day

Prepare a new subculture each week to create working cultures

(eg, prepare working cultures from the same subculture for up

to seven days; then prepare a new subculture on day 8).

100

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Storing and Testing Quality Control Strains

Prepare new primary subcultures at least

monthly from frozen, freeze-dried, or commercial

cultures (eg, subculture each week for no more

than three successive weeks).

For best results, some strains may require

preparation of new subcultures more frequently

(eg, every two weeks)

101

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Quality Control Strain Maintenance

102

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Quality Control Strain Maintenance

103

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Zone Diameter Quality Control Limits /2011

104

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Zone Diameter Quality Control Limits/2011

105

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Frequency of Quality Control Testing

Monitor the overall performance of the test system using the

QC limits by testing the appropriate QC strains each day the

test is performed or, if satisfactory performance is documented ,

test the QC strains weekly.

The weekly QC testing option outlined below is not applicable

when disk diffusion tests are performed less than once a week.

Quality control testing should be performed each test day for

disk diffusion tests performed less than once a week

106

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Quality Control Protocol: Each Test Day

107

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Quality Control Testing Protocol: Weekly Testing

108

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109

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Corrective Action/Out-of-Control Result Due to Identifiable Error

110

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Additional Corrective Action

When immediate corrective action does not resolve the

problem, the problem is likely due to a system rather

than a random error

Additional investigation and corrective action is

required. Refer to Troubleshooting Guide for

assistance

111

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Disk Diffusion QC Troubleshooting Guide /2011

112

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Disk Diffusion QC Troubleshooting Guide /2011

113

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Disk Diffusion QC Troubleshooting Guide /2011

114

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Disk Diffusion QC Troubleshooting Guide /2011

115

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Verification of Patient Test Results

It is important to review all of the results obtained from all

drugs tested on a patient’s isolate prior to reporting the results

The antimicrobial susceptibility results are consistent with the

identification of the isolate

The results from individual agents within a specific drug class

follow the established hierarchy of activity rules (eg, third-

generation cephalosporins are more active than first- or

second-generation cephalosporins against Enterobacteriaceae)

116

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Misleading Results

Dangerously misleading results can occur when certain

antimicrobial agents are tested and reported as

susceptible against specific organisms :

First- and second-generation cephalosporins,

cephamycins, and aminoglycosides against Salmonella

and Shigella spp

117

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Penicillins, β-lactam/β-lactamase inhibitor

combinations, cephems, and carbapenems against

oxacillin-resistant Staphylococcus spp / MRSA

Aminoglycosides (except high concentrations),

cephalosporins, clindamycin, and

trimethoprimsulfamethoxazole against Enterococcus

spp

118

Misleading Results

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119

Emergence of Resistance

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120

Natural Resistances

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121

Antimicrobial Agent / Intrinsic Resistance

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122

Natural Resistances

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Suggestions for Verification of AST Results & Confirmation of Organism ID

123

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124

Suggestions for Verification of AST Results & Confirmation of Organism ID

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125

Suggestions for Verification of AST Results & Confirmation of Organism ID

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Suggestions for Verification of AST Results & Confirmation of Organism ID

126

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127

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SELECTION OF ANTIMICROBIAL AGENTS TO TEST

Selection of appropriate agents for testing is based on

Clinical indications

Efficacy

Pharmacological factors

Local prevalence of resistant organisms

Cost

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129

Antimicrobial Agent /Anatomic Distribution

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130

CSF

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131

Urine Culture

Erythromycin & Clindamycin &

Chloramphenicol

NOT Routinely reported on isolates from

the urinary tract.

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Suggested Guidelines for Routine and Selective Testing and Reporting

Group A

Group B

Group C

Group O

Group U

132

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CLSI 2011 : M100-S21 -Zone Diameter and

Minimal Inhibitory Concentration (MIC)

Interpretive Standards for Enterobacteriaceae

.

133

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CLSI 2011 : M100-S21- Enterobacteriaceae

134

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CLSI 2011 : M100-S21- Enterobacteriaceae

135

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136

Salmonella

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137

Nalidixic Acid

Extraintestinal isolates of Salmonella should also be tested for resistance to nalidixic acid.

For isolates that test susceptible to fluoroquinolones and resistant to nalidixic acid ,the physician should be informed that the isolate may not be eradicated by fluoroquinolone treatment.

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β-Lactamase-Mediated Resistance in Gram-Negative Bacilli

The major mechanism of resistance to β-lactam

antimicrobial agents in gram-negative bacilli is

production of β-lactamase enzymes.

Many different types of enzymes have been reported.

They may be classified as molecular Class A, B, C, or D

enzymes.

139

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β-Lactamase-Mediated Resistance in Gram-Negative Bacilli

140

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β-Lactamase-Mediated Resistance in Gram-Negative Bacilli

Extended-spectrum β-lactamases are enzymes

that arise by mutations in genes for common

plasmid-encoded β-lactamases, such as TEM-1,

SHV-1, and OXA-10

Or may be only distantly related to a native

enzyme, as in the case of the CTX-M β-

lactamases. A similar native enzyme (OXY or K1)

in Klebsiella oxytoca acts as an ESBL when

overexpressed 141

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142

Extended Spectrum Beta-Lactamases / ESBLs

There are over 300 different ESBLs described

All of which are mutations of the classical broad-spectrum beta lactamase enzymes that were initially named TEM and SHV (TEM-1, TEM-2, SHV-1)

ESBL’s are named TEM-3, -4 etc., SHV-2, -3 etc., CTXM-1, -2 etc., OXA-1, -2 etc

ESBLs hydrolyze penicillins, cephalosporins and the monobactam(Aztreonam) , conferring resistance to all of these drug classes

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143

Extended Spectrum Beta-Lactamases / ESBLs

They do not hydrolyze the cephamycin antibiotics (ie; cefoxitin), which

are close relatives to the cephalosporins

ESBL’s are also inhibited by beta-lactamase inhibitors such as

clavulanate, sulbactam and tazobactam

ESBLs are generally inactive against the carbapenem antibiotics

(Imipenem, Meropenem, Ertapenem).

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144

Extended Spectrum Beta-Lactamases / ESBLs

Ceftazidime resistance is the best indicator for TEM- and SHV-derived ESBLs in E. coli and Klebsiella spp

Tests with ceftazidime are generally more reliable than with cefotaxime, but some ESBLs are detected only with cefotaxime, so both (or cefpodoxime) should be tested

Most ESBLs are inhibited by clavulanic acid and this is the basis of current tests for ESBLs, but be aware that no currently available test is completely reliable

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145

Extended Spectrum Beta-Lactamases / ESBLs

Cefotaxime resistance is a better indicator for the CTX-M enzymes

CTX-M-type B-lactamases hydrolyze cefepime with high efficiency , and

cefepime MICs are higher than observed in bacteria producing other

ESBL types

Tazobactam exhibits an almost 10-fold greater inhibitory activity than

clavulanic acid against CTX-M-type B-lactamases

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CLSI 2011 : M100-S21- Enterobacteriaceae

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147

Combination Disk Method

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148

Double Disk Method

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149

Double Disk Method-Keyhole / ESBLs

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150

Extended Spectrum Beta-Lactamases / ESBLs

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CLSI 2011 : M100-S21- Enterobacteriaceae

151

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β-Lactamase-Mediated Resistance in Gram-Negative Bacilli

Plasmid-encoded AmpC-like enzymes have

a similar profile to ESBLs in that they

confer reduced susceptibility to penicillins,

cephalosporins, and aztreonam, but also

cephamycins.

Because they are carried on plasmids they

can be transmissible among bacteria.

152

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153

AmpC beta-lactamases

AmpC beta-lactamases differ from ESBL’s in that they are

cephalosporinases >50 Enzyme and are resistant to beta-

lactamase inhibitors (clavulanate, sulbactam and tazobactam)

Plasmid-mediated AmpC enzymes are increasingly encountered in E. coli

and Klebsiella spp.

They hydrolyze the cephamycins (eg. cefoxitin) , but not the 4th

generation cephalosporins (eg. cefepime)

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154

AmpC beta-lactamases

High-level production of AmpC usually causes resistance to all

beta-lactams & monobactam (aztreonam ) except carbapenems

and 4th generation cephalosporins (eg. cefepime)

Plasmid-mediated AmpC’s have been detected in organisms

such as E coli, Klebsiella sp, Proteus sp and Salmonella sp

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155

AmpC beta-lactamases

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156

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157

Boronic acid disc enhancement method

2 cefoxitin discs (30µg) were placed on a Mueller Hinton Agar plate lawn inoculated with a 0.5 McFarland turbidity adjusted suspension of the test strain

To one of the discs, 400µg of phenyl boronic acid (Sigma-Aldrich) was added.

After overnight incubation at 37° C, the zones of inhibition were measured.

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158

Boronic acid disc enhancement method

Enhancement of zone of inhibition by 5 mm around a cefoxitin disc with PBA, in comparison with a disc with cefoxitin alone, was taken as a positive result for Amp C production

At present, there are no validated phenotypic tests to confirm the presence of plasmid-encoded AmpC β-lactamases / CLSI

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159

Why did CLSI lower cephalosporin and aztreonam breakpoints for

Enterobacteriaceae?

Previous breakpoints established over 20 years ago (before ESBLs)

ESBL issues complex

Presence of multiple resistance mechanisms may mask ESBL in confirmatory test

ESBL + AmpC

ESBL + porin mutation

Revised breakpoints will better detect isolates with various β-lactam resistance mechanisms

Eliminate need for ESBL testing

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Carbapenems Doripenem, ertapenem, and meropenem are slightly more active against

enterobacteriaceae than is imipenem

Ertapenem has no activity against P. aeruginosa

Ertapenem differs from other carbapenems in two important respects: it has a long half-life permitting once-daily dosing

Ertapenem is active against AmpC and extended-spectrum β-lactamase–producing enterobacteriaceae

Meropenem is the only carbapenem approved by the U.S. Food and Drug Administration for treatment of bacterial meningitis

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Mechanisms of Carbapenem Resistance

Carbapenemase hydrolyzing enzymes

Porin loss “OprD”

ESBL or AmpC + porin loss

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Metallo-β-lactamases

Metallo-β-lactamases are carbapenemases that require

zinc for activity and are inhibited by substances such as

EDTA, which bind zinc

Metalloenzymes may be carried on mobile genetic

elements and can occur in Acinetobacter spp., P.

aeruginosa, Serratia marcescens, and Klebsiella

pneumoniae

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CLSI 2011 : M100-S21- Enterobacteriaceae

163

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165

Staphylococci

.

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Staphylococcus spp / 2003

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M100-S19 / CLSI 2009

Eliminate oxacillin disk

diffusion test for

coagulase negative

staphylococci

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168

Staphylococci

The results of disk diffusion tests using

A 30-Microgram Cefoxitin disk and

Alternate breakpoints can be used to

Predict mecA mediated resistance in

staphylococci.

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Staphylococci

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Staphylococci

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CLSI 2008 / M100-S18

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172

CLSI 2008 / M100-S18

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Staphylococci - 2009 CLSI M100-S19

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174

Staphylococci - 2009 CLSI M100-S19

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175

Staphylococci - 2009 CLSI M100-S19

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176

B-Lactamase Detection / Plasmid-mediated

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D-Test in CLSI 2004-2006

Inducible clindamycin resistance can be detected by placing a 2-Microgram clindamycin disk from 15 mm to 26 mm away from the edge of a 15 Mg erythromycin disk as part of the normal disk diffusion procedure.

Following incubation, organisms that do not show flattening of the clindamycin zone should be reported as"clindamycin susceptible."

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178

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179

CLSI 2008 / M100-S18

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180

.

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Reduced Susceptibility to Vancomycin

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Vancomycin-resistant Staphylococcus aureus (VRSA)

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183

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Staphylococci - 2009 CLSI M100-S19

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185

Staphylococci - 2009 CLSI M100-S19

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186

Staphylococci - 2009 CLSI M100-S19

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Staphylococci 2011

187

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189

Linezolid / Oxazolidinones/ Bacteriostatic

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190

Linezolid / CLSI 2010 / M100-S20

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191


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