Cardiovascular disease (CVD)
12
Unit 1: Lifestyle, Transport, Genes and Health1
Green Book 1.1,1.2 Orange Book 1.1
Bloodclottingisavitaldefencemechanismforthebody.Ifyousufferacutorgraze,thenclottingcan:• minimisebloodloss• helppreventtheentryofpathogens• provideaframeworkforrepair.But,ifaclotoccursinsideabloodvesselitcanbeverydangerous,blockingbloodflowandsometimesleadingtothedeathoftissues.
Clotformationisstimulatedwhenthereisdamagetoabloodvessel.Damageexposescollagenfibrestowhichplatelets(smallcellswithnonucleusformedwhenaprecursorcellfragments)attach.Theplateletsreleaseaclottingfactorcalledthromboplastin.InthepresenceofcalciumionsandvitaminK,thromboplastinconvertsinactiveprothrombinintoactivethrombin.Thisinturnconvertsthesolublefibrinogenintoinsolublefibrin,whichformsanetworkoffibres,trappingcellsanddebristomakeaclot.
Atherosclerosis
13
Topic 1: Lifestyle, health and risk 1
Green Book 1.1, 1.2 Orange Book 1.1
Treatment of CVDRiskofCVDcanbereducedbylifestylechanges:• stoppingsmoking• moderateexerciseseveraltimesaweek• stoppingover-consumptionofalcohol• dietarychanges,especiallyloweringcholesterolandsaturatedfatintake.
Medicaltreatmentswhichcanhelpare:• reducinghighbloodpressure(usuallydefinedasover160(systolic)/100(diastolic))
byantihypertensives• reductionofbloodcholesterol,e.g.bydietorbydrugssuchasstatins• anticoagulants• platelet inhibitors.
ThetablesummarisessomedrugsusedfortreatingCVDandtherisksassociatedwiththeiruse.
Make sure you know that the two substances, prothrombin and fi brinogen, are the inactive forms. Pro means, roughly, fi rst as in prototype. You may have met trypsinogen at GCSE and know that the –ogen suffi x means the inactive form.
The formation of an atherosclerotic plaque is a positive feedback phenomenon.
Athero (artery) sclerosis (hardening) – the plaque makes the wall become less elastic and narrows the artery.
CVDstroke – blood supply to part of the brain is cut off
angina – narrowing
of coronaryblood
vessels
heart attack –blockage ofcoronary vessels
peripheral vascular disease –thrombosis, narrowing of arteries to periphery, especially common in the legs
The various types of cardiovascular disease (CVD), all caused as a result of atherosclerosis.
Drug treatment Mode of action Risks/side effects
diuretics(antihypertensive)
increasevolumeofurine;lowersbloodvolumeandpressure
veryoccasionaldizziness,nausea,musclecramps
betablockers(antihypertensive)
blockresponseofhearttohormonesandmakecontractionslessfrequentandlesspowerful
possiblelinkwithdiabetes
ACEinhibitors(antihypertensive)
blocktheproductionofangiotensin(ACEstandsforangiotensinconvertingenzyme)whichnormallycausesarterialconstrictionandariseinbloodpressure
cough,dizziness,heartarrhythmia,impairedkidneyfunction
statins lowercholesterollevelinthebloodbyblockingtheliverenzymethatmakescholesterol
muscleaches,nausea,constipationanddiarrhoea;veryrarelyinflammationreactionscanoccurwhich,evenmorerarely,arefatal;also,againrarely,liverfailure;also,peoplemaystoptryingtoeatahealthydiet,leavingitalltothestatins
anticoagulants,e.g.warfarin
reduceriskofclotformation riskofuncontrolledbleeding;dosagecontrolisessential
plateletinhibitorydrugs,e.g.aspirin,clopidogrel
makeplateletslesssticky aspirinirritatesthestomachliningandcancauseseriousstomachbleeding;usingclopidogrelwithaspirincanmaketheriskevengreater
You probably will not know enough about what these treatments do to work out what the risks might be, so try to learn them thoroughly.
Q1 Listthefactorswhichmustbepresentinorderforabloodclottoform.Q2 EvenifallthebloodclottingchemicalsyouhavelistedinQ1werepresent,
thiswouldnotallowaclottoform.Whatelseisneeded,apartfromarangeofchemicals?
Q1 Use the outline fl owchart below to summarise the clotting process by substituting the correct terms from the description on page 12.
Thinking TaskTheriskofsufferingfromCVDisincreasedby:
• geneticfactors
• age
• gender
• highbloodpressure
• lifestylefactors–diet,exerciseandsmoking.
(Seepage16formoredetails.)
increasedriskofblood clottingintheartery
infl ammatory response
whitebloodcellsmoveintothearterywall
cholesterolbuildsup,leadingtoformation
ofatheroma
build-upofcalciumsaltsandfibresleadingtoplaque formation
narrowingofartery
raisedbloodpressure
damage to endothelial liningof
artery(e.g.bysmoking,highbloodpressure)
A
B
C D
E F
clot
G H
Topic 1.indd 12-13 9/7/09 11:07:09
DNA replication and protein synthesis
Unit 1: Lifestyle, Transport, Genes and Health1
36 Green Book 2.1 Orange Book 2.4
The genetic code must:• self replicate so that copies can pass to daughter cells during cell division• carry information that codes for proteins.
When DNA was confi rmed as the genetic code, there were competing theories about how it replicated. Meselson and Stahl’s classic experiment with Escherichia coli showed that the semi-conservativetheory was correct.
37
Topic 2: Genes and health 1
Green Book 2.1 Orange Book 2.4
Protein synthesisThe genetic code in DNA is in the nucleus, but the proteins formed using the code are made in the cytoplasm. So the DNA code is copied, making a molecule of messengerRNA in a process called transcription. The mRNA passes into the cytoplasm through nuclear pores and is used to make a polypeptide in a process called translation.
Meselson and Stahl’s experiment.
Students often confuse DNA replication with the process of mRNA synthesis (transcription). Try not to fall victim to this error.
How does DNA replication occur?During replication the two strands of DNA unwind and split apart. Free nucleotides line up along each strand, observing the complementary base pairing rules (page 34). The enzyme DNA polymerase bonds the nucleotides together as a phosphodiester bond forms between each deoxyribose and adjacent phosphate group. Hydrogen bonding links the two strands together.
DNA replication.
The words ‘transcription’ and ‘translation’ are very similar and very easily muddled. Try to remember this. When you go from English to French you are going from one language to another; you are translating. When you go from a base sequence (in mRNA) to an amino acid sequence in a polypeptide you are going from one language to another, so again translating. Once you have got this, you should also know what transcription is.
Q1 Given the following sequence of bases on a strand of DNA, what would be the sequence on the complementary strand and on the mRNA molecule formed from it?
TACGGTATGCCAACCTTC
Q2 Write a defi nition of each of the following terms, in the context of DNA replication and protein synthesis:
transcription translation template strand sense strand
If you answer a question, such as ‘How does DNA replicate?’ with a diagram, remember to explain it as well.
Summary of the steps in protein synthesis.
How does transcription work?During transcription the DNA unwinds and hydrogen bonds between base pairs split to separate the two strands. Only one strand is used in the formation of mRNA – the template (antisense) strand. The unused strand is called the sense strand.
Ribonucleotides are paired with their complement on the template strand: uracil pairs with adenine instead of thymine. The ribonucleotides are then joined up by RNApolymerase to form a strand of mRNA.
A
A
T
T
C
G
U
G
G
T
A
C
C
C
C
C
G
A
A
A
A
C
C
G
A
A
T
T
T
TC
G
G
A
T
C
G
G
G
GG
sensestrand
template(antisense)strand
ribonucleotides
mRNAforming
A
T
T
T
Transcription, mRNA synthesis, in progress.
Q1 If one strand of DNA, during replication, has had ACT added to it, what will be the next nucleotide added – A, C, T or G, or can you not say? Explain your answer.
Q2 Make a table to compare DNA replication with transcription.
Thinking Task
Make sure you have got the terms ‘sense strand’, ‘antisense strand’, ‘template’, ‘codon’ and ‘anticodon’ clear in your mind. Make a card with descriptions of each one on it.
What is translation?The mRNA carries the genetic message in the same base sequence language as the DNA. Transfer RNA (tRNA) translates the base sequence on the mRNA into the protein amino acid sequence. Each tRNA molecule carries an amino acid to the mRNA, where the amino acid joins others carried by other tRNAs to build a polypeptide.
DNA
mRNA
transcription
mRNA
protein
translation
cytoplasm
nucleus
tRNA–amino acid
after one generation after two generations
Experiment
Results
Conclusion
less dense
1 bacteria cultured in medium containing 15N
2 bacteria transferred to medium containing 14N
more dense
makes normal DNAwhich spins less farin centrifuge
expectedresults foreach theory
conservativemodel
semiconservativemodel
dispersivemodel
first replication second replication
makes heavy DNAwhich spins downfurther in centrifuge
after one generation after two generations
Experiment
Results
Conclusion
less dense
1 bacteria cultured in medium containing 15N
2 bacteria transferred to medium containing 14N
more dense
makes normal DNAwhich spins less farin centrifuge
expectedresults foreach theory
conservativemodel
semiconservativemodel
dispersivemodel
first replication second replication
makes heavy DNAwhich spins downfurther in centrifuge
Topic 2.indd 36-37 9/7/09 11:17:32
Cells and organelles
52
Unit 2: Development, Plants and the Environment2
Green Book 3.1 Orange Book 3.1
Somesingle-celledorganismsandallmulticellularorganismssuchashumansaremadeupofeukaryoticcells.Aeukaryoticcellalwayscontains:
• anucleus,containinggeneticmaterial,surroundedbyadoublemembrane(orenvelope
• organelles(structures)inthecytoplasm,eachsurroundedbyoneortwomembranes.
Animal cell ultrastructureUltrastructureisthenameforthefinestructurethatisrevealedwhenusingapowerfulmicroscopesuchasanelectronmicroscope.Theultrastructureofaeukaryoticanimalcellanddetailsofsomeofitsorganellesareshownbelow.
Cross-section of a generalised animal cell – a typical eukaryotic cell.
Protein transport within eukaryotic cells1. Amino acids made intoprotein on the ribosomes.
2. Newly made proteinstored in rER cavity. 5. Protein being modified
in the Golgi apparatus.
vesicle which may containextracellular enzymes
3. Protein being packaged atthe ends of rER. Membranecloses forming a vesicle.
4. Vesicles, pinched off therER, transport proteintowards the Golgi apparatus.
The Golgi apparatus and rER are involved in the making and movement of proteins through the cell. The
arrows show the direction of transport. The proteins leave the cell by exocytosis, when the vesicles fuse with
the cell surface membrane.
53
Topic 3: The voice of the genome 2
Green Book 3.1 Orange Book 3.1
Make sure that you can recognise and label the organelles from electron microscope (EM) images as well as from diagrams.
ThemodifiedproteinisplacedintovesiclesbytheGolgiapparatus.Somemaybeexportedoutofthecell,suchasextracellularenzymes,e.g.amylaseandprotease.
Golgi apparatus
rER (rough endoplasmic reticulum)
ribosomes
sER (smooth endoplasmicreticulum)
nucleus
nucleolus
centrioles
lysosome
mitochondria
ribosomes
A
B
Onewaytoinvestigateproteintraffickingistouseradioactiveaminoacids.
Atissuewassoakedinasolutionofradioactiveaminoacidsforashortperiodoftimeandthentransferredtoasolutionwithnon-radioactiveaminoacids.
Thetablebelowshowstheamountofradioactivity,asapercentageofthetotalradioactivityinthecellsofthistissue,foundinthreeorganelles,atthreedifferenttimesafterbeingtransferredtothenon-radioactivesolution.
Organelle Percentageoftotalradioactivityincellsaftertissuetransferredtonon-radioactivesolution
5min 10min 45min
vesicles 0 5 60
rER 80 10 5
Golgiapparatus 10 80 30
totalradioactivity 90 95 95
(a) ThevesiclescontainingradioactivitycaneithercomefromrERortheGolgiapparatus.Usingevidencefromthetable,suggestwhetherthesevesiclescomefromrERortheGolgiapparatus.
AsmostoftheradioactivityisintherERat5minutes,youwouldexpectalotinthevesiclessoonafterwardsiftherERmadethesevesicles.At10minutes,therewasonlyalittleinthevesiclesandalotintheGolgiapparatus.ThissuggeststhattheGolgiisjustbeginningtomakethesevesicles.Thisisconfirmedat45minuteswhenthereislessradioactivityintheGolgiapparatusasitisnowinthevesicles.Thevesicles,therefore,comefromtheGolgiapparatus.
(b) Suggestanexplanationforthedifferenceinthetotalradioactivitybetween5minutesand10minutes.
Atfirst,itlooksasthoughradioactiveaminoacidshavesuddenlyappearedbutthiscannotbe.Thisisaquestionaboutexperimentaltechnique.Datawascollectedatthreetimeintervalsratherthancontinuously.Itcouldbethatat4minsmoreradioactivitywasattherERbutby5minsithasalreadybeenpackagedandisintransittotheGolgi.By10minsithasarrivedattheGolgi.
Topic 3.indd 52-53 9/7/09 11:24:07
2 Unit 2: Development, Plants and the Environment
Multicellularorganismsareorganismsmadeupofmanycells.Thesecellsarenotrandomthroughoutthebodybutareorganised.Therearefourlevelsoforganisationasshownbelow.Plantandanimalexamplesaregiven.
Q1 Explainwhatismeantbythetermsystem.
Q2 Suggestonereasonwhyorgansareconsideredmorecomplexthancells.
Q1 Make a table to compare a tissue and an organ.
Thinking Task
54 55Green Book 3.1 Orange Book 3.3
Q1 During cell division, an animal
cell does not have a nucleus but is still considered to be eukaryotic. Suggest two reasons why this cell is still considered to be eukaryotic.
Q2 Draw a diagram of a Golgi apparatus.
Q3 Make a fl owchart to describe protein traffi cking from when the protein is fi rst formed until it is released from the cell as an extracellular enzyme.
Thinking Task
Q1 Givethreestructuraldifferencesbetweenatypicalprokaryoticcellandahumanlivercell.
Q2 Giveonesimilaritybetweenthestructureofanucleusandamitochondrion.
Q3 DescribehowyoucoulddistinguishrERfromGolgiapparatus.
Q4 Listfourmembrane-boundorganellesfoundinananimalcell.
Feature Prokaryoticcell Eukaryotic
Animalcell Plantcell
nucleuswithenvelope absent present present
membrane-boundorganelles absent present present
DNAfoundas aloop separatestrands separatestrands
slimecapsule sometimespresent neverpresent neverpresent
flagella simple(ifpresent) complex(ifpresent) absent
cellwall present(bacterial) absent present(cellulose)
relativesizeofcell small medium large
Table to compare a prokaryotic cell with two typical eukaryotic cells.
Allcellsofmulticellularorganismsareeukaryotic.Palisadecellandlivercellareexamples.
Tissuesconsistofoneorafewdifferenttypesofcellthatworktogethertoperformafunction.Epidermaltissueandmuscletissueareexamples.
Organsaremadeupofvarioustissuesgroupedtoworktogetherandperformtheirfunctionefficiently.Leafandheartareexamples.
Systemscomprisevariousorgansthatworktogethertoperformalarge-scalefunction.Manypeoplebelievetherearenosystemsinplants.Thedigestivesysteminhumansisanexample.
cells
tissues
organs
systems
Thediagramshowsasectionthroughaleaf.Explainwhythisleafisconsideredtobeanorgan.
• Thequestionasksaboutthisleaf,sowemustrefertothediagram.Notethatthereisnoreferencetochloroplastssonomarkswouldbegivenforwritingaboutfunction.
• Statethatanorganismadeupofseveraltissues.Pointoutthatthediagramshowspalisadetissueandalsoepidermalandspongytissue.Sothisleafhasthreetissuesvisible,henceisanorgan.
epidermal cell
one cell from thepalisade tissue
spongy cell
guard cell
Section through a leaf.
Magnifi cation and estimating sizeImagineacellthatmeasures10mmacrossonapagebecauseithasbeenmagnified1000times.Fromthiswecanworkoutthetruesizeofthecellbyusingtheformulabelowandtheexample.
Calculationstages
1 Usingthepyramid,youcanseethattruesizeisfoundbydividingimagesizebymagnification.
2 10×10–3m(10mm)÷1000=
3 Theanswercomesouttobe10×10–6mor10μm
NB:Toworkoutmagnificationusingthepyramid,useimagesize÷truesize.
When asked to compare, you should include similarities and differences.
Cellular organisation
Topic 3: The voice of the genome 2
flagellum*
photosyntheticmembranes*
loop of DNA (nucleoid)
glycogen granules,lipid droplets
cell surface membrane
smallribosomes
cell wall
plasmids*
* = not present in all bacteria
A typical prokaryotic cell. Compare this to the diagram of the eukaryotic cell.
Differences between a prokaryotic cell and a eukaryotic cell
Make sure you realise that bacteria are prokaryotes and that both plant and animal cells are eukaryotic cells.
54545454 Green Book 3.1 Orange Book 3.1
Make sure all dimensions are in the same units before you start the calculation. This is a common source of error.
imagesize
truesize
magnifi-cation
Topic 3.indd 54-55 9/7/09 11:24:21
Species and biodiversity
70
Unit 2: Development, Plants and the Environment2
Green Book 4.3, 4.4 Orange Book 4.1, 4.3
Biodiversityisthevarietyofdifferentorganismswithinahabitat.Twoaspectstoconsiderare:• Speciesrichness–thenumberofdifferentspecieswithinanareaofknownsizeata
particulartime.Aspeciesisagroupoforganismswithsomanyfeaturesincommonthattheycanmateandproducesexuallyviableoffspring.
• Geneticdiversity–thegeneticvariationwithinaspecies.
How to measure these two aspects of biodiversity1 Measuringspeciesrichness
Toestimatethespeciesdiversity,randomsamplingcanbecarriedout.Anumberofquadrats(often10)ofknownsizearerandomlyplacedinanarea.Allthespeciesfoundineachquadratarerecordedandusedtoestimatethetotalspeciesrichness.
71
Topic 4: Biodiversity and natural resources 2
Green Book 4.3, 4.4 Orange Book 4.1, 4.3
Q1 Makeaflowcharttoexplainhowspeciesrichnesscanbemeasured.Q1 In a large population of
organisms, eight different alleles were found for one gene. However, when only half of the population was sampled, six different alleles were found for the same gene. Suggest two possible reasons for the absence of the two alleles.
Thinking Task
Make sure you know the difference between diversity and density of organisms.
1 Usingthedatainthetable:
aworkoutthenumberofspeciesfoundinthe3m2
sampled.
b constructabarcharttocomparethefrequencyofoccurrenceofeachspecies.
Answers
a Itdoesn’tmatterwhetherthespeciesoccursonlyonceormanytimesasthisquestionitemisaskingforpresenceorabsenceonly.Theansweris,therefore,5asAtoEoccuratleastonce.
b Frequencyisthetotalnumberoftimeseachspeciesisfound.ForspeciesAitis1andforspeciesDitis3.Thebarchartisshownbelow.
1m2quadratnumber
Species 1 2 3
A ✔
B ✔
C ✔ ✔
D ✔ ✔ ✔
E ✔ ✔
F
Freq
uenc
y of
occ
urre
nce
3
2
1
A B
Species
EC D F0
2 Measuringgeneticdiversity
Findthenumberofdifferentallelesinagenepool.
Eachgenemayhaveonetomanydifferentalleles.
Thetotalnumberofgenesaspecieshas
Make sure you know the difference between alleles and genes. A gene codes for a characteristic, e.g. eye colour. The alleles are the alternative forms, e.g. blue or brown, of a gene that codes for a variable characteristic, e.g. eye colour.
EndemismEndemismdescribesthesituationwhereaspeciesisfoundinonlyoneparticulararea.Thering-tailedlemurisrestrictedtotheislandofMadagascarandsoisconsideredtobeendemictoMadagascar.
A new taxonomic groupingThreedomainshavebeenidentifiedbasedonmolecularphylogeny.Molecularphylogenycomparesthestructureofaparticularmoleculefromdifferentorganismstodiscovertheirdegreeofevolutionaryrelatedness.Themoresimilarthestructureofthemolecule,themorecloselyrelatedtheorganismsaretoeachother.Thisisbecausechangesinmoleculestructuregenerallyoccuronlyslowlyastheyarecausedbymutations.
Thethreedomainsare:
• Bacteria
• Archaea
• Eukaryota.
Theideaofthethreedomainsillustratesthescientificprocessandtheimportantroleofcriticalevaluationofnewdatabythescientificcommunity.
Mutations in DNA and the structure of the proteins produced are covered in Unit 1.
Alllifeissplitintotheprokaryotesandeukaryotes
AscientistcalledWoesesuggestedathirdgroupwhichhecalledthe
Archaea;hesupportedhissuggestionwithevidence
Otherscientistsstudytheevidencecarefully;thisiscalledpeer review
Otherscientistsstarttocollectevidence
Mostscientistsacceptedthatalllifewaseitherprokaryotic(cellswithoutatruenucleus)oreukaryotic(cellswithatruenucleus).
Woesepublishedapaperinascientificjournalusingmolecularphylogenicevidence.Thisisonewayofinformingthescientific
communityofadiscovery.OtherwaysincludepresentinginformationataconferenceorusingtheInternet.
Thescientistsarecheckingthattheevidenceisaccurateandcorrect,thattheconclusionsdrawnaresensibleandthatthemethodsused
areappropriate.
Theevidencewillhelptosupportthesuggestion,torejectthesuggestionorleadtoamodificationofthesuggestion.Thereisstill
debateaboutWoese’ssuggestionbutmuchofthescientificcommunitynowacceptthethreedomains.
Topic 4.indd 70-71 9/7/09 11:33:40