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ASIC 200 GENOMICS 2014 ONE (WEB) · Revolution Technology, Humanity Scientific Method, Biology ....

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Personal Genomics and the Social Sciences and Humanities
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Page 1: ASIC 200 GENOMICS 2014 ONE (WEB) · Revolution Technology, Humanity Scientific Method, Biology . Society and Prediction: ... (GM crops/food) • Legal and regulatory systems • Domestic

Personal Genomics and the Social Sciences and Humanities

Page 2: ASIC 200 GENOMICS 2014 ONE (WEB) · Revolution Technology, Humanity Scientific Method, Biology . Society and Prediction: ... (GM crops/food) • Legal and regulatory systems • Domestic

Personal genomics is not just a physical and life sciences issue: it is a political,

economic, and social issue

Page 3: ASIC 200 GENOMICS 2014 ONE (WEB) · Revolution Technology, Humanity Scientific Method, Biology . Society and Prediction: ... (GM crops/food) • Legal and regulatory systems • Domestic

We need to be aware of how we are embedded in a larger social discourse on

molecular biology and genetics.

Page 4: ASIC 200 GENOMICS 2014 ONE (WEB) · Revolution Technology, Humanity Scientific Method, Biology . Society and Prediction: ... (GM crops/food) • Legal and regulatory systems • Domestic

Society and Prediction: Zeitgeist

Society

Discourse

Science

Page 5: ASIC 200 GENOMICS 2014 ONE (WEB) · Revolution Technology, Humanity Scientific Method, Biology . Society and Prediction: ... (GM crops/food) • Legal and regulatory systems • Domestic

Society and Prediction: Frankenstein: or, The Modern Prometheus (1818)

“Rationalism” Revolution

Technology, Humanity

Scientific Method, Biology

Page 6: ASIC 200 GENOMICS 2014 ONE (WEB) · Revolution Technology, Humanity Scientific Method, Biology . Society and Prediction: ... (GM crops/food) • Legal and regulatory systems • Domestic

Society and Prediction: Brave New World (1932)

Social Engineering,

Mass Production, “Americanization”

Utopian/ Dystopian Futures

Biology, Early Genetics

Page 7: ASIC 200 GENOMICS 2014 ONE (WEB) · Revolution Technology, Humanity Scientific Method, Biology . Society and Prediction: ... (GM crops/food) • Legal and regulatory systems • Domestic

Society and Prediction: Jurassic Park (1990)

Mass Production, Consumerism

Trespass, Consequences

Biotechnology

Page 8: ASIC 200 GENOMICS 2014 ONE (WEB) · Revolution Technology, Humanity Scientific Method, Biology . Society and Prediction: ... (GM crops/food) • Legal and regulatory systems • Domestic

Society and Prediction: Zeitgeist

Privacy, Privatization

Hope and Fear

Personalized Genomics

Page 9: ASIC 200 GENOMICS 2014 ONE (WEB) · Revolution Technology, Humanity Scientific Method, Biology . Society and Prediction: ... (GM crops/food) • Legal and regulatory systems • Domestic

Genetics and Human Society

•  Medicine (genetic testing, gene therapy, cloning, pharmaceuticals)

•  Health care (practices, policies) •  Industry (chemicals, energy) •  Agriculture (GM crops/food) •  Legal and regulatory systems •  Domestic politics •  International/Global

Page 10: ASIC 200 GENOMICS 2014 ONE (WEB) · Revolution Technology, Humanity Scientific Method, Biology . Society and Prediction: ... (GM crops/food) • Legal and regulatory systems • Domestic

The Levels of Analysis: Individual, State/Group, System

Page 11: ASIC 200 GENOMICS 2014 ONE (WEB) · Revolution Technology, Humanity Scientific Method, Biology . Society and Prediction: ... (GM crops/food) • Legal and regulatory systems • Domestic

How did we get here?

Personal genomics has a history…

Page 12: ASIC 200 GENOMICS 2014 ONE (WEB) · Revolution Technology, Humanity Scientific Method, Biology . Society and Prediction: ... (GM crops/food) • Legal and regulatory systems • Domestic

26 June 2000

Announcement of the sequencing of the human genome, after an effort that took 13 years at an estimated cost of 2.7 - 3 billion dollars.

Page 13: ASIC 200 GENOMICS 2014 ONE (WEB) · Revolution Technology, Humanity Scientific Method, Biology . Society and Prediction: ... (GM crops/food) • Legal and regulatory systems • Domestic

President Bill Clinton

"Today, we are learning the language in which God created life. We are gaining ever more awe for the complexity, the beauty, and the wonder of God's most divine and sacred gift."

Page 14: ASIC 200 GENOMICS 2014 ONE (WEB) · Revolution Technology, Humanity Scientific Method, Biology . Society and Prediction: ... (GM crops/food) • Legal and regulatory systems • Domestic

But...

…the announcement was premature. A truly complete sequencing of the genome was

not accomplished until 2003.

Page 15: ASIC 200 GENOMICS 2014 ONE (WEB) · Revolution Technology, Humanity Scientific Method, Biology . Society and Prediction: ... (GM crops/food) • Legal and regulatory systems • Domestic

…and it was a competition!

Page 16: ASIC 200 GENOMICS 2014 ONE (WEB) · Revolution Technology, Humanity Scientific Method, Biology . Society and Prediction: ... (GM crops/food) • Legal and regulatory systems • Domestic

Philosophical Divisions

Some scientists (i.e., Venter and his company Celera) energetically pursued patents on various gene sequences, with a view to the commercial potential of the patents

Other scientists (Collins) saw gene sequences as public goods

Page 17: ASIC 200 GENOMICS 2014 ONE (WEB) · Revolution Technology, Humanity Scientific Method, Biology . Society and Prediction: ... (GM crops/food) • Legal and regulatory systems • Domestic

Enter President Clinton..

•  In March 2000, President Clinton announced the genome sequence could not be patented and should be made available free to all researchers.

Page 18: ASIC 200 GENOMICS 2014 ONE (WEB) · Revolution Technology, Humanity Scientific Method, Biology . Society and Prediction: ... (GM crops/food) • Legal and regulatory systems • Domestic

…Exit stock value.

•  The announcement sent Celera’s stock value into a nosedive, and biotechnology stocks lost $50 billion in market capitalization in two days.

Page 19: ASIC 200 GENOMICS 2014 ONE (WEB) · Revolution Technology, Humanity Scientific Method, Biology . Society and Prediction: ... (GM crops/food) • Legal and regulatory systems • Domestic

Raising Hopes

Sequencing the human genome promised much: greater understanding of disease; improved medical treatments; and more

effective pharmaceuticals

…but more than 20 years later, few results.

Page 20: ASIC 200 GENOMICS 2014 ONE (WEB) · Revolution Technology, Humanity Scientific Method, Biology . Society and Prediction: ... (GM crops/food) • Legal and regulatory systems • Domestic

Raising Hopes Again

There are signs that breakthroughs are coming…for example, genetic screening of

pregnant women for trisomies.

Page 21: ASIC 200 GENOMICS 2014 ONE (WEB) · Revolution Technology, Humanity Scientific Method, Biology . Society and Prediction: ... (GM crops/food) • Legal and regulatory systems • Domestic

A trial study published in the New England Journal of Medicine found that 3.6 percent of standard tests for

trisomies returned false positives, while only 0.3 percent of Illumina's Verify test returned false positives.

The implications are significant: fewer pregnant women

would need to go through amniocentesis or chorionic villus sampling, which carry a risk of miscarriage.

Page 22: ASIC 200 GENOMICS 2014 ONE (WEB) · Revolution Technology, Humanity Scientific Method, Biology . Society and Prediction: ... (GM crops/food) • Legal and regulatory systems • Domestic

The Potential

Human genome sequences can be

compared with each other and with those of other species to reveal gene function and

improve understanding of species evolution, genome functions, and the development of

disease.

Page 23: ASIC 200 GENOMICS 2014 ONE (WEB) · Revolution Technology, Humanity Scientific Method, Biology . Society and Prediction: ... (GM crops/food) • Legal and regulatory systems • Domestic

The Potential

Pharmacogenomics promises the ability to match drugs to a patient’s genome, and

avoid adverse drug reactions.

Page 24: ASIC 200 GENOMICS 2014 ONE (WEB) · Revolution Technology, Humanity Scientific Method, Biology . Society and Prediction: ... (GM crops/food) • Legal and regulatory systems • Domestic

The Potential

Greater understanding of the genetic aspects of aging could lead to life extending

treatments and improved quality of life.

Page 25: ASIC 200 GENOMICS 2014 ONE (WEB) · Revolution Technology, Humanity Scientific Method, Biology . Society and Prediction: ... (GM crops/food) • Legal and regulatory systems • Domestic

Venter is at it again…with Human Longevity Inc.

“This is Celera on steroids and cocaine. We would have done all this 13 years ago if we could have.”

Page 26: ASIC 200 GENOMICS 2014 ONE (WEB) · Revolution Technology, Humanity Scientific Method, Biology . Society and Prediction: ... (GM crops/food) • Legal and regulatory systems • Domestic

The Potential

Our understanding of human life and our relationship to the natural world, of human

origins and evolution, will increase dramatically.

Page 27: ASIC 200 GENOMICS 2014 ONE (WEB) · Revolution Technology, Humanity Scientific Method, Biology . Society and Prediction: ... (GM crops/food) • Legal and regulatory systems • Domestic

Concerns in the literature •  Abuse of the technology •  Public education and awareness •  The role or law and government regulation •  Individual rights and privacy •  Reproductive ethics •  Patient and physician relations •  Potential for social engineering •  Genetic discrimination •  Racial and minority group marginalization •  Global governance and unequal distribution of benefits

Page 28: ASIC 200 GENOMICS 2014 ONE (WEB) · Revolution Technology, Humanity Scientific Method, Biology . Society and Prediction: ... (GM crops/food) • Legal and regulatory systems • Domestic

Personal Genomics and the Social Sciences and Humanities

Core Themes

Page 29: ASIC 200 GENOMICS 2014 ONE (WEB) · Revolution Technology, Humanity Scientific Method, Biology . Society and Prediction: ... (GM crops/food) • Legal and regulatory systems • Domestic

1. Analytical and policy complexity

Page 30: ASIC 200 GENOMICS 2014 ONE (WEB) · Revolution Technology, Humanity Scientific Method, Biology . Society and Prediction: ... (GM crops/food) • Legal and regulatory systems • Domestic

The Levels of Analysis: Individual, State/Group, System (Global?)

Page 31: ASIC 200 GENOMICS 2014 ONE (WEB) · Revolution Technology, Humanity Scientific Method, Biology . Society and Prediction: ... (GM crops/food) • Legal and regulatory systems • Domestic

Standard of living

Personal Aspirations

Personal Health

Education

Personal Ethics

Spiritual Beliefs Life Experiences

Page 32: ASIC 200 GENOMICS 2014 ONE (WEB) · Revolution Technology, Humanity Scientific Method, Biology . Society and Prediction: ... (GM crops/food) • Legal and regulatory systems • Domestic

Political System

Economic and Social Priorities

Laws and regulations Leadership

Public Opinion

Interest Groups

Marginalized Groups

Page 33: ASIC 200 GENOMICS 2014 ONE (WEB) · Revolution Technology, Humanity Scientific Method, Biology . Society and Prediction: ... (GM crops/food) • Legal and regulatory systems • Domestic

Institutions

Diplomacy/negotiations

Competition/rivalry Information Flow

Inequality Norms

Page 34: ASIC 200 GENOMICS 2014 ONE (WEB) · Revolution Technology, Humanity Scientific Method, Biology . Society and Prediction: ... (GM crops/food) • Legal and regulatory systems • Domestic

2. The genie is out of the bottle

•  Accessibility is increasing as costs fall and more genetic information is openly available.

Page 35: ASIC 200 GENOMICS 2014 ONE (WEB) · Revolution Technology, Humanity Scientific Method, Biology . Society and Prediction: ... (GM crops/food) • Legal and regulatory systems • Domestic

2. The genie is out of the bottle

•  Genetic privacy in the Information Age

Page 36: ASIC 200 GENOMICS 2014 ONE (WEB) · Revolution Technology, Humanity Scientific Method, Biology . Society and Prediction: ... (GM crops/food) • Legal and regulatory systems • Domestic

CSI ASIC 200: From Anonymous Genome to Individual Identity?

A person acquired some anonymous human genomes (only matching

info was age and U.S. state)

?

This person was able to match some of those genomes to

specific individuals and identify their

relatives


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