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Bacterial Contaminants of Plant Tissue Culture
Plant Tissue CultureMBT 722
2011
Prof. Naim Iraki
Amer Wazwaz1000316
Importance of Controlling Contamination
The medium contains many different bacterial nutrients, both original constituents of the medium
and exudates from the plant cells (Bradbury 1988).
When microbe(s) come in contact with plant tissue or medium then we will have a contamination.
Plant [tissues/ cells] growing in vitro are considered to be under some stress conditions and may be predisposed to direct infection, even by bacteria
not normally pathogenic to them (Bradbury 1970).
Contaminating Bacteria Can Be Divided into
Epiphytes
Common Disinfection can be enough
EndophytesMore problematic
Disinfection is not enough
Antibiotics are needed
Pathogenic bacteria can be a contaminant
Contaminating Bacteria May Originate from
Explants
Lab environment
Contaminating Bacteria May Originate from
Operators
Mites and Thrips
Contaminating Bacteria May Originate from
Ineffective sterilization techniques
Can contaminate cultures at any procedural step if we don’t take strict standards
Procedures for producing aseptic cultures require attention to
Indexing explants and cultures for contaminants
Identifying the source of those contaminants
Identifying and characterizing the contaminants
Eliminating the contaminants with
improved cultural practices, antibiotics or other chemical agents
Indexing Cultures Serial stem slices inoculated into liquid and agar-solidified
3 different bacterial media
Incubated for three weeks at 30°C, detected most contaminants from more than 60 aquatic, marsh, and ornamental woody
plant species (Kane. 1995)
Usually, a contaminant would grow on two of the three media (Kane. 1995)
Contaminated cultures are sometimes rooted and transferred to the greenhouse instead of being discarded (Kane. 1995)
Cultures and Medium Indexing
Pious Thomas, CURRENT SCIENCE, VOL. 87, NO. 1, 10 JULY 2004
a. Healthy bacteria-index-negative (left) and index-positive (right) cultures of triploid watermelon
b. Medium-indexed plate showing different bacterial types one week post-indexing.
Characterization and Identification
Purification by standard bacteriological methods
Characterization by biochemical tests, Gram staining
Identification by traditional tests which are
Labor-intensive and time consuming
Can be performed in any laboratory with common chemicals
Through comparing with the standard strains of Bergey's Manual ) Krieg and Holt 1984(
Modern Identification Techniques
Biolog system
Detects carbon source utilization with
the reduction of tetrazolium dye in response to cellular respiration
Can identify yeasts and fungi
Through comparing the results with a database of responses
Modern Identification Techniques
Analytical Profile Index or API system
Carbon source utilization test
Visual detection of the test )Leifert et at. 1989; Vemiere et al., 1993(
Enzymatic oxidation/reduction interactions
Allows the identification of a limited number of Bacteria
Modern Identification Techniques
Fatty Acid Analysis Profiles FAP
Uses gas chromatography to identify over 140 separate fatty acids
Fatty acid profile is matched to a library of 700+ bacterial species representing over 180 genera
Can identify yeasts and fungi also
Match fatty acid methyl esters with those of known organisms (Buckley et al.. 1995; Chase et al., 1992; Stead et at, 1992)
Modern Identification Techniques
16S rRNAPCR amplification/ probes for known sequence
Using this system depends upon the number and diversity of bacteria in the databases
Many soil and plant bacteria have not been not characterized (Buckley et al. 1995)
For a more accurate identification the use of more than one test is Recommended (Jones et al. 1993) and ( Verniere et al. 1993)
Rate of occurrence of microbial contaminant in plant tissue culture
Odutayo et al. Afr. J. Agric. Res. Vol. 2(3), pp. 067-072, March 2007
The occurrence of bacteria isolates in plant tissue culture
Odutayo et al. Afr. J. Agric. Res. Vol. 2(3), pp. 067-072, March 2007
Antibiotic Treatments
Choosing an antibiotic depends on the type of bacteria Gram negative or Gram positive
Ideal antibiotics should be
soluble, stable, unaffected by pH, unaffected by media, lacking side effects, broadly active, bactericidal, suitable in combination, non-resistance inducing, inexpensive and nontoxic to human health.
Many antibiotics exist that have not yet been evaluated on plants or their bacterial contaminants (Falkiner, 1990; Seckinger, 1995).
Antibiotic Treatments
Antibiotics may be inactivated by environmental conditions heat/ light
Antibiotic sensitivity is reduced in plant tissue culture media due to different favorable pH degrees
Antibiotic concentration [ MBC ] for a particular bacteria should be determined
Phytotoxicity varies greatly among plant species and explant types, so preliminary testing with plant cultures is important
Effects of different concentrations of antibiotics at different durations of time to ensure
contamination free cultures
Habiba et al. Plant Tissue Cult. 12(2) : 117-124, 2002
Antibiotic Effects on Shoots Number and Multiplication Rate
Multiplication rate of Pelargonium shoots before (week 0),during and after treatment with carbenicillin or cefotaxime
*end of cefotaxime treatment**end of carbenicillin treatmentA. Wojtania et al. J. Fruit
Ornam. Plant Res. 104 vol. 13, 2005
Antibiotic Effects on Shoots Number and Multiplication Rate
Pelargonium shoots after 3 weeks of the growth on the medium containing cefotaxime (A) and carbenicillin (B)
A. Wojtania et al. J. Fruit Ornam. Plant Res. 104 vol. 13, 2005
Conclusion
Several steps can reduce bacterial contaminants
Properly training the operators
Indexing cultures at initiation stage/culture cycle
Identifying contaminants and testing to determine the proper antibiotic
Thank You
Questions