Baseline Data Infrastructure as Mega-File Data Cube (MFDC) of the World
Baseline Data Infrastructure as Mega-File Data
Cube (MFDC) of the World
Table of Contents 1. Goal ....................................................................................................................................... 1
2. Global Landsat GLS data ...................................................................................................... 2
2.1. Landsat BDI for year 2000 (LBDI 2000) ......................................................................... 2
2.2. Uncompression & Selection of Bands ............................................................................ 3
2.3. Clip Landsat TM Images Irregular Edge Strip ................................................................ 3
2.3.1 In Erdas ................................................................................................................... 4
2.3.2 In Arcgis .................................................................................................................. 4
2.4 Re-project to Geographic Projection (Using Erdas) ....................................................... 5
2.5 Covert DN to TOA reflectance ........................................................................................ 5
2.6 Calculation of NDVI ........................................................................................................ 9
2.7 Mosaicking ...................................................................................................................... 9
2.7.1 In Erdas ................................................................................................................... 9
2.8 Scene-Selected Map: Best Set of GLS data ................................................................ 10
2.9 5 Mosaics GLS data for the 7 regions of the world ....................................................... 12
3 Global MODIS 2000 MFDC ................................................................................................. 15
3.1 MODIS BDI for year 2000 (2000-2002) ........................................................................ 15
3.2 Maximum Composition of B1, B2 and NDVI ................................................................. 16
4 References .......................................................................................................................... 33
1. Goal The overarching goal of this document is to clearly outline the processing steps involved in
creating a baseline data infrastructure (BDI) for the NASA MEaSUREs funded global food
security-support Analysis data @ 30 m (GFSAD30) project.
● First, we will outline the steps involved in creating Landsat GLS data mosaics of the
world for the 1975, 1990, 2000, and 2010 epochs. We will include 4 Landsat bands from
the thematic mapper (TM) and enhanced thematic mapper (ETM+) sensors of 1990,
2000, and 2001. These 4 bands are: red, near-infrared, shortwave infrared, and thermal
infrared. For the 1975 multi-spectral scanner (MSS), we will include a red and a near-
infrared band. An additional band will be normalized difference vegetation index (NDVI).
Baseline Data Infrastructure as Mega-File Data Cube (MFDC) of the World
● Second, we will outline the steps involved in creating MODIS monthly maximum value
composite (MVC) normalized difference vegetation index (NDVI) data.
● Third, we will outline the creation of megafile data cubes (MFDCs) involving Landsat
GLS, MODIS monthly MVC NDVIs, and secondary data for each epoch.
● Fourth, we will outline the creation of MFDCs of time series AVHRR GIMMS data for
1982 to 2011.
The above sets of data will be used as primary baseline data infrastructure (BDI) in the
GFSAD30 project.
2. Global Landsat GLS data Global Landsat BDI for: 4 epochs: 1975, 1990, 2000, 2005, 2010 are summarized in Table 1.
The Table 1 shows the numbers of images, sensor from which they are acquired, and the total
storage volume occupied. These images will be used in GFSAD30 project. The GLS scenes are
band separate, in UTM coordinates, WGS-84 datum, are distributed in GeoTIFF format, and are
compressed using tar and gzip / bZip. Collectively, these datasets provide consistent
observations of global, orthorectified, leaf-on, “cloud free” data (Gutman, et al., 2008).
Epoch Scenes Size* ETM+ TM MSS ALI
2010 8453 1.5TB 3719 4734 n/a n/a
2005 9375 1.64TB 7087 2288 n/a n/a
2000 8755 2.18TB 8755 n/a n/a n/a
1990 7371 975GB n/a 7371 n/a none
1975 7592 250GB n/a n/a 7592 n/a
Table 1. Global coverage of the Landsat GLS Data for epoch 2010, 2005, 2000, 1990, 1975.
The table shows the sensor from which the data are acquired and the required storage volume.
The entire process described in section 2.0 and it’s sub-sections are used to convert the entire
global Landsat GLS images from DN to reflectance using NEX supercomputing platform located
in NASA AMES Research Center. It took a total of 130 hours to convert ~8700 images totally.
2.1. Landsat BDI for year 2000 (LBDI 2000)
First, we will describe the LBDI for the year 2000 (LBDI 2000). The LBDI 2000 will consist of:
● 5 Bands (RED, NIR, MIR, THM, NDVI) will be stored with singed 16 integer. RED, NIR,
MIR is top of atmosphere (TOA) reflectance (%) from Band 3, 4, 5. THM is the
radiometric temperature (K) from thermal bands. NDVI is a ratio of the red and near
infrared reflectance.
● Spatial resolution: 30m pixels or ~0.00026949 degree or 0.09 hectares.
● Projection / Datum: Geographic / WGS 84
● Composite is based on data quality and the maximum NDVI for the overlaping area.
Baseline Data Infrastructure as Mega-File Data Cube (MFDC) of the World
● A Scene-Selected Map providing geo-location and date-gather information of selected
scenes is available.
● Global domain is divided into 7 regions (Figure 1): North America, South America, Africa,
Europe, Middle East, Asia and Australia.
Figure 1. Landsat tiles over 7 regions over cropland areas and/or potential cropland areas.
Overall, there are 4990 Landsat tiles over croplands/potential croplands (above figure) of ~9000
Landsat tiles (see Table 1) covering the entire terrestrial Earth. The areas where there is
currently zero croplands and/or their chances of occurring in future are about zero (e.g., Sahara
desert, Antarctica), no Landsat images are selected to avoid processing unnecessary images
for cropland studies.
2.2. Uncompression & Selection of Bands
The primary GLS scenes (http://glcf.umd.edu/data/gls/) are band separate, in UTM
coordinates, WGS-84 datum, are distributed in GeoTIFF format, and are compressed
using tar and gzip / bZip. Thereby, in order to process them, uncompressing them and
select the bands we need (see section 2.10) for the GFSAD30 project. The bands we
need to study croplands are selected based on our best knowledge of how best to study
croplands as well as to avoid redundant data from multiple bands to ensure to keep data
volumes low and processing fast.
2.3. Clip Landsat TM Images Irregular Edge Strip
Sometime there is some irregular strips on the edge of landsat TM. It could be a problem when
you mosaic these files together. So we need to clip them with an user-defined AOI (Figure 2).
Baseline Data Infrastructure as Mega-File Data Cube (MFDC) of the World
2.3.1 In Erdas
Here are the steps for how to clip an image by a shapefile in ERDAS Image Compressor:
1. Display the Landsat TM file in Erdas viewer.
2. Create a new AOI layer (ERDAS Menu button > New > 2D View > AOI Layer). Draw a
polygon which can sepeate the strips area.
3. Export the AOI area to shapefile, named the main basename of Landsat TM data, endswith
shp.
4. Import the Shapefile in to an ERV file by using the `Import Shapefile Wizard'.
5. Use VR Wizard (Vector to Region Conversion) in order to convert the ERV file into the Raster
Image as a Region. Make sure that Output dataset should be your Raster image > Ok
6. Open the imagery in ER Mapper IC
7. Click the CR Wizard (The Clip Region Wizard)
8. In the `Clip Region' dialog box choose the `Create Customized Clip Region' > `Next'
9. Make sure that in the `New Map Composition' dialog the `Raster Region' radio button is
selected >Ok > A `Tools' dialog box will be opened.
10. In the Tools buttons click the Pointer icon (Select / Edit Point mode)
11. Click inside the region, it will highlight the region.
12. In the `Tools' dialog click the `Display/Edit object Attribute' an button with a ABC and a tick
mark.> In the `Map Composition Attribute' dialog, at the lower box name your region (Say "r1")>
Apply
13. Then in the "Tools" dialog click the Save File button. The region `r1' will
be saved in the Imagery > OK to all subsequent messages.
14. Click the Finish button in the Define Clip Region for Current Window dialog
15. Close everything except the image window and ERM IC main window.
16. Click the `CR wizard' again> `Add Clip Region' radio button > Next.
17. Type the exact name of your clip region> Next
2.3.2 In Arcgis
1. In ArcToolbox navigate to Spatial Analyst Tools > Extraction > Extract by Mask. Open this
tool.
2. Specify the raster desired to clip as the input raster.
3. Specify the polygon feature class/shapefile desired to clip the raster.
4. Specify an output raster. Click OK to run the tool.
Baseline Data Infrastructure as Mega-File Data Cube (MFDC) of the World
Figure 2: Remove Irregular Edge Strip of Landsat TM Images
2.4 Re-project to Geographic Projection (Using Erdas)
Open the image in the ERDAS Imagine Viewer and by using the Raster> Polynimial
Order>Reproject utility for reproject.
The default output format is supposed to be Geotiff or ERDAS Imagine, with Geographic / WGS
84 Projection, output cell size should be 0.00026949 degree (0.09 hectares).
When storing your raster output, you can choose LZW for compression. Also check the
BILINEAR option, bilinear interpolation, which determines the new value of a cell based on a
weighted distance average of surrounding cells.
2.5 Covert DN to TOA reflectance
The Landsat Thematic Mapper (TM) and Enhanced Thematic Mapper Plus (ETM+) bands store
data as digital number (DN) between 0 and 255. Two steps need to do to retrieve the real value:
1).convert the DNs to radiance values using the bias and gain values; 2).converts the radiance
data to TOA reflectance.
The formula to convert DN to radiance using gain and bias values is:
Which is also expressed as:
Where: Lλ = Spectral Radiance at the sensor's aperture in watts/(meter squared * steradian * μm) Grescale = Rescaled gain (the data product "gain" contained in the Level 1 product header or ancillary data record)
in watts/(meter squared * steradian * μm)/DN Brescale = Rescaled bias (the data product "offset" contained in the Level 1 product header or ancillary data record
) in watts/(meter squared * steradian * μm) DN = the quantized calibrated pixel value in DN LMINλ = the spectral radiance that is scaled to QCALMIN in watts/(meter squared * steradian * μm) LMAXλ = the spectral radiance that is scaled to QCALMAX in watts/(meter squared * steradian * μm) QCALmin = the minimum quantized calibrated pixel value (corresponding to LMINλ) in DN. 1 for LPGS products; 1 for NLAPS products processed after 4/4/2004 ; 0 for NLAPS products processed before
4/5/2004 QCALmax = the maximum quantized calibrated pixel value (corresponding to LMAXλ) in DN = 255
Baseline Data Infrastructure as Mega-File Data Cube (MFDC) of the World
The LMINs and LMAXs are the spectral radiances for each band at digital numbers 0 or 1 and
255 (i.e QCALMIN, QCALMAX), respectively. LPGS used 1 for QCALMIN while NLAPS used 0
for QCALMIN for data products processed before April 5, 2004. NLAPS from that date now uses
1 for the QCALMIN value. Other product differences exist as well. One LMIN/LMAX set exists
for each gain state. These values will change slowly over time as the ETM+ detectors lose
responsivity.
Table 2(a), 2(b) and 2(c) list sets of LMINs, LMAXs, ESuns, and earth sun distance. The first set
should be used for both LPGS and NLAPS 1G products created before July 1, 2000 and the
second set for 1G products created after July 1, 2000. Please note the distinction between
acquisition and processing dates. Use of the appropriate LMINs and LMAXs will ensure
accurate conversion to radiance units. Note for band 6: A bias was found in the pre-launch
calibration by a team of independent investigators post launch. This was corrected for in the
LPGS processing system beginning Dec 20, 2000. For data processed before this, the image
radiances given by the above transform are 0.31 w/m2 ster um too high. See the official
announcement for more details. Note for the Multispectral Scanner (MSS), Thematic Mapper
(TM), and Advanced Land Imager (ALI) sensors.
Table 2a. Spectral range, calibration parameters and exo-atmospheric solar irradiance for TM
Baseline Data Infrastructure as Mega-File Data Cube (MFDC) of the World
Table 2b. Spectral range, calibration parameters, and exo-atmospheric solar irradiance for
ETM+
The effective at-satellite apparent reflectance (p-unitless) is calculated using spectral radiance (Ri), earth-
sun distance (d) expressed in astronomical units (Au), solar zenith angle () (which is 90 degrees minus
the sun elevation or sun angle when the scene was recorded as given in the image header file), and solar
flux or exatmospheric irradiances (F0) (Markam and Barker, 1985, 1987). This provides the nadir
reflectance from both the surface and the atmosphere above it and normalizes the effects of solar
elevation, and earth-sun distance. This is also referred in literature variously as planetary albedoes or
exatmospheric reflectance. d (unitless) varies between 0.96 to 1.04 (Table 2c), can be obtained from
nautical handbook (see Markham and Barker, 1987), but is often assumed as 1. (degrees) is provided in
the image header file. F0 (W m-2
m-1
) is obtained from Figure 3. (e.g., for Landsat TM bands in Table
2d).
Where:
p = at-satellite exo-atmospheric reflectance (unitless)
L = radiance W / m2 Sr1 m1 or mW/cm2 sr m1 or mW/cm2 Sr m
d = see Table 2c. earth to sun distance in astronomic units obtained based on acquisition date from
standard tables (unitless) (see Markham and Barker, 1987)
ESUN = Mean solar exo-atmospheric irradiances (W / m2 Sr1 m1 or mW/cm2 sr m1 or mW/cm2 Sr
m) or solar flux data obtained from Neckel and Labs (1984) data. For IKONOS, ALI, and ETM+ bands
see data in Table 2a, b derived from Neckel and Labs (1984).
s = solar zenith angle in degrees (which is 90 degrees minus the sun elevation or sun angle when
the scene was recorded as given in the image header file; see sun elevation data from header files of
individual images or can be calculated based on latitude, logitude, and acquisition time).
Baseline Data Infrastructure as Mega-File Data Cube (MFDC) of the World
Figure 3. Solar Flux (mW cm-2m-1) (Nickel and Labs, 1981).
Table 2d. Solar flux or exatmospheric irradiances (mW cm-2 m-1) for Landsat-5 TM wavebands
(Markham and Barker, 1985).
Band Exatmospheric irradiances (W m-2 μm-1)
1 1946.48
2 1812.63
3 1545.95
4 1046.70
5 211.12
6 10.000
7 76.91
Baseline Data Infrastructure as Mega-File Data Cube (MFDC) of the World
2.6 Calculation of NDVI
The NDVI is calculated from spectral reflectance measurements acquired in the visible (red) and
near-infrared (NIR) regions, respectively:
2.7 Mosaicking
2.7.1 In Erdas
1. Open Erdas, from the Data Prep icon select Mosaic Images.
2. When the Mosaic Tool window appears, select Add Images from the Edit menu.
3. The Add Images for Mosaic dialog box will appear. Browse to the files containing the tiled
imagery and select each tile in order from the Northwest corner. Change Filename: to *.TIF
or *.img (must be all caps) depending on which format you are using. Each tile has the row
and column number in the naming convention.
4. Highlight the image to add it and click on the Add button.
5. Do this for each successive tile, adding left to right, top to bottom.
6. The Mosaic Tool should look like the screenshot below (Figure 4) , starting with the first tile at
the upper left and the last tile and the lower right.
Baseline Data Infrastructure as Mega-File Data Cube (MFDC) of the World
Figure 4: Mosaic Tool of Erdas
7. When you have added all of the tiles, in the Mosaic Tool window, select Process -> Run
Mosaic. In the resulting Run Mosaic window check the box Stats. Ignore Value: 0, enter an
output File Name, and select OK. A pop-up window appears displaying the Percent Done of the
data preparation. This step may take some time, depending on the size and number of tiles.
When complete, click OK to close the window.
2.8 Scene-Selected Map: Best Set of GLS data
Shapefile containing geometry of scenes, path-row, acquisition date and sensor-type is
generated.
Baseline Data Infrastructure as Mega-File Data Cube (MFDC) of the World
Figure 5: Sensor-ID of the GLS data used in mosaic maps for Region Africa
Baseline Data Infrastructure as Mega-File Data Cube (MFDC) of the World
Figure 6: Acquisition Dates of the GLS data used in mosaic maps for Region Africa
2.9 5 Mosaics GLS data for the 7 regions of the world
Epoch Sensor Band Units Scale Data Type
Fill Value
Range
GLS 2000
ETM Band
3 TOA reflectance (-) 0.001 int16 -9999 0 - 1000
ETM Band
4 TOA reflectance (-) 0.001 int16 -9999 0 - 1000
ETM Bnad
5 TOA reflectance (-) 0.001 int16 -9999 0 - 1000
ETM Band
6 Radiometric temperature (K) 0.100 int16 -9999 0 - 1000
ETM NDVI Normalized Difference Vegetation Index (-)
0.001 int16 -9999 -1000 - 1000
GLS TM/ETM Band TOA reflectance (-) 0.001 int16 -9999 0 - 1000
Baseline Data Infrastructure as Mega-File Data Cube (MFDC) of the World
2010 3
TM/ETM Band
4 TOA reflectance (-) 0.001 int16 -9999 0 - 1000
TM/ETM Bnad
5 TOA reflectance (-) 0.001 int16 -9999 0 - 1000
TM/ETM Band
6 Radiometric temperature (K) 0.100 int16 -9999 0 - 1000
TM/ETM NDVI Normalized Difference Vegetation Index (-)
0.001 int16 -9999 -1000 - 1000
GLS 1990
TM Band
3 TOA reflectance (-) 0.001 int16 -9999 0 - 1000
TM Band
4 TOA reflectance (-) 0.001 int16 -9999 0 - 1000
TM Bnad
5 TOA reflectance (-) 0.001 int16 -9999 0 - 1000
TM Band
6 Radiometric temperature (K) 0.100 int16 -9999 0 - 1000
TM NDVI Normalized Difference Vegetation Index (-)
0.001 int16 -9999 -1000 - 1000
GLS 1975
MSS Band
2 TOA reflectance (-) 0.001 int16 -9999 0 - 1000
MSS Band
3 TOA reflectance (-) 0.001 int16 -9999 0 - 1000
MSS NDVI Normalized Difference Vegetation Index (-)
0.001 int16 -9999 -1000 - 1000
Table 3: The individual bands chosen for mosaics for the 7 regions of the world (Figure 1).
Baseline Data Infrastructure as Mega-File Data Cube (MFDC) of the World
Figure 7: GLS-2010 Mosaic of the R-NIR-MIR bands combination in crop area for Region Africa,
Map projection: Geographic
Baseline Data Infrastructure as Mega-File Data Cube (MFDC) of the World
Figure 8: GLS-2010 Mosaic of the NDVI in crop area for Region Africa, Map projection:
Geographic
3 Global MODIS 2000 MFDC
<should we merge Parda’s document here?>
3.1 MODIS BDI for year 2000 (2000-2002)
MODIS BDI for year 2000 consists 52-band, nominal 250 m MFDC of the World, including 250m
MODIS red and NIR band, ndvi band which is using the maximum value composite results. We
collected the best 8-days MOD09 reflectance product from 2000 to 2002, which means we will
have the monthly composite from 12 single 8-days images, which would make sure we have
enough clear-sky images even in rain season.
● Band 1 to band 12: MODIS b1 (red) minimum value composite (MVC); 1 band per month
Baseline Data Infrastructure as Mega-File Data Cube (MFDC) of the World
● Band 13 to band 24: MODIS b2 (NIR) maximum value composite (MVC); 1 band per
month
● Band 25 to band 36: MODIS NDVI maximum value composite (MVC); 1 band per month
● Band 37 to band 48: AVHRR Skin Temperature (in degree kelvin); 1 band per month
(based on 20 yer. Average)
● Band 49: ASTER DEM project (resolution: 30m) or GDEM project (resolution: 1km); 1
band
● Band 50: Tree Cover > 75% (resolution: 8km); 1 band
● Band 51: 40-year-annual-mean (CRU) precipitation (resolution: 8km); 1 band
● Band 52: 40-year-mean from CRU (resolution: 8km); 1 band
3.2 Pre-processing of MODIS Data
3.2.1 Download MODIS Data
There are two ways to download MODIS data
1). Directly from http site (http://e4ftl01.cr.usgs.gov)
Go to http://e4ftl01.cr.usgs.gov/MOLT/MOD09Q1.005/
Then you will have sub folders with dates, each sub folder have every 8-day MVC data files in
HDF format for the whole globe. Select the required tiles for your study area.
For example: Australia covered in the following tiles:
h27v11,h27v12, h28v11, h28v12, h28v13, h29v10, h29v11, h29v12, h29v13, h30v10, h30v11,
h30v12, h30v13, h31v10, h31v11, h31v12, h31v13 and h32v10 as shown in the following
sinusoidal map.
Baseline Data Infrastructure as Mega-File Data Cube (MFDC) of the World
Figure 9. MODIS Tiles covering Region Australia
2). By ordering data through NASA’s earth observing system Data and Information system
Reverb tool.
Open http://reverb.echo.nasa.gov and follow the steps
Under step 1: Select search Criteria
Search terms
Enter MOD09Q1 in search terms on the right hand side
Spatial search
There are 5 options in spatial search
Select 2D Coordinate under spatial search
Select MODIS Tile SIN under Coordinate System
For e.g. Australia covers in MODIS tiles SIN: 27-31, 10-13
Start X coordinate is 27
END X coordinate is 31
Start Y coordinate is 10
END Y coordinate is 13
Baseline Data Infrastructure as Mega-File Data Cube (MFDC) of the World
Figure 10a. Reverb tool: Product Search Page
Temporal search:
Select the time period (1st Mar 2000 to 28th Feb 2003) to order 3 year data to make maximum
value composite from three year data (which is called nominal 2000)
Check at MODIS/Terra Surface Reflectance 8-Day L3 Global 250m SIN Grid V005 under step2
:select datasets
Check at MODIS/Terra Surface Reflectance 8-Day L3 Global 250m SIN Grid V005 under step3
:Discover Granules
Then start search granules, if total number of granules is more than 2000 then reduce the time
period and start search (maximum limit is 2000 granules).
Now you can view the selected granules in your search
Baseline Data Infrastructure as Mega-File Data Cube (MFDC) of the World
Check the granule IDS, if not require a specific granule remove from the selection, then add to
cart
View the Items in the cart
Check the shopping cart; still you can verify the granule ids, if you don’t require you can remove
the granules from the cart
Figure 10b. Reverb tool: Select Granules
You will see items in the shopping cart
In the shopping cart, click on order to order your data
Baseline Data Infrastructure as Mega-File Data Cube (MFDC) of the World
Figure 10c. Reverb tool: Ordering Cart
Set the delivery option to http pull and save
Baseline Data Infrastructure as Mega-File Data Cube (MFDC) of the World
Figure 10d. Reverb tool: Order Options
Baseline Data Infrastructure as Mega-File Data Cube (MFDC) of the World
Figure 10e. Reverb tool: Order Review
Click on submit order
Baseline Data Infrastructure as Mega-File Data Cube (MFDC) of the World
Figure 10e. Reverb tool: Order Receipt
You will receive Reverb Order Confirmation to your email and Followed by a LPDAAC ECS
Order Notification (Order ID: 0306569132) with host details and directory for your data. From
there you can download the data.
Here are details for the above order:
HOST: e4ftl01.cr.usgs.gov
DIR: /PullDir/0302921601mGBIo
Pull Download Links:
http://e4ftl01.cr.usgs.gov/PullDir/0302921601mGBIo/
Download ZIP file of packaged order:
http://e4ftl01.cr.usgs.gov/PullDir/0302921601mGBIo.zip
Baseline Data Infrastructure as Mega-File Data Cube (MFDC) of the World
3.2.2 Re projecting data from Sinusoidal projection:
Step 1: Download and organize Hierarchical Data Format (HDF): Download HDF files of the
study area and arrange into one folder (e.g., G/MOD09Q1/Australia). Ensure that the folder you
have created contains all the HDF files that will be processed being systematic in storing data is
critical in the entire process; therefore properly name your folder.
Step 2: Format conversion and re projection: The MODIS re projection tool (MRT) converts HDF
file into tagged image file (TIF) format. The tool also allows re projection and resampling of the
TIF files. Below are the steps we followed.
If you haven't done so, download the MRTool from
https://lpdaac.usgs.gov/tools/modis_reprojection_tool and install it. A user manual is also
available providing a more detail description of what MRTool is and how to use it (Note: system
must be installed Java software).
Add HDF files: Click on the Open Input File button (shown in Magenta in the diagram below).
The Open window will appear. Using the Look in input box, navigate to the folder (e.g.,
G/MOD09Q1/Australia) where the downloaded HDF files are stored.
Select the required images on the same date at a time. Since 16tiles cover the entire Australia,
16 HDF files of the same date has to be selected.
Baseline Data Infrastructure as Mega-File Data Cube (MFDC) of the World
Figure 11a. ModisTool MRT: Open MODIS Reflectance Products
Baseline Data Infrastructure as Mega-File Data Cube (MFDC) of the World
Once the HDF files are loaded, the source information is displayed in the Input File Info,
Available/Selected bands, Spatial Subset, and Bounding coordinates.
Figure 11b. ModisTool MRT: Parameters Setting
Select all the files in the input box to view in a map, click on view selected tiles to view the
selected tiles on the map.
Baseline Data Infrastructure as Mega-File Data Cube (MFDC) of the World
Figure 11c. ModisTool MRT: Selected tiles Overview
Figure 11d. ModisTool MRT: Basic Input Parameters
Band selection: By default, all available bands are selected and appear in the box to the right
(Selected Bands). We only need bands 1 and 2.
To exclude certain bands from processing, click on the unwanted bands and use the “<<” button
to deselect them (below figure). This will move it to the box on the left (Available Bands). To
move bands from the Available box to the Selected box, click on the desired band and use “>>”
button. Shift-Click and Ctrl-Click are useful for highlighting multiple bands for selection.
Spatial subset : Input Lat/Long and specify Latitude and Longitude of UL corner and LR
corner(e.g., UL (-10, 112.9),LR(-45, 158.96)
Baseline Data Infrastructure as Mega-File Data Cube (MFDC) of the World
c. Output file: Click on the Specify Output File button. Provide an output name similar to the
input filename (i.e. “MOD09Q1.A2002059”) to maintain consistency.
Figure 11e. ModisTool MRT: Output Filename
It is very important to include the file extension as part of the filename. The file extension
indicates the file format of the output image. Adding ".hdf" will tell MRT to output to HDF-EOS,
".tif" to output to GeoTIFF, and ".hdr" to output to raw binary.
Likewise, in Output File Type, select GEOTIFF from the drop box (GEOTIFF is a standard
image format in image processing software).
d. Resampling: Select the Resampling Type as “Nearest Neighbor”
Baseline Data Infrastructure as Mega-File Data Cube (MFDC) of the World
e. Reprojecting: This procedure transforms the sinusoidal equal area projection of the input
HDF into the geographic coordinate system. The Output Projection Type is selected from a
drop-down list as Geographic, and its parameters are entered using the Edit Projection
Parameters button. Select WGS 84 as datum.
Figure 11e. ModisTool MRT: Output Options
Baseline Data Infrastructure as Mega-File Data Cube (MFDC) of the World
The output pixel also has to be defined. Since our output image will be in geographic
coordinates, the pixel resolution is measured in degrees. MOD09Q1 is 232 m resolution; this is
equivalent to 0.0021 degrees at the equator.
Figure 11e. ModisTool MRT: Output Options (cont)
f. Executing the conversion: Click Run button to execute the conversion process. After
processing , the following status window appears “Finished processing”
Baseline Data Infrastructure as Mega-File Data Cube (MFDC) of the World
Baseline Data Infrastructure as Mega-File Data Cube (MFDC) of the World
Baseline Data Infrastructure as Mega-File Data Cube (MFDC) of the World
Figure 11f. ModisTool MRT: Running Logging Information
3.3 Maximum Composition of B1, B2 and NDVI
TBD
4 References ● Global Land Survey(GLS) website in UMD:
http://glcf.umd.edu/data/gls/
● Global Land Survey Activities and Land Cover Analysis from Landsat
http://www.codata.org/10Conf/abstracts-presentations/Sessions%20E/E4/E4-Franks.pdf
● Creating Cloud-Free Landsat ETM+ Data Sets in Tropical Landscapes: Cloud and
Cloud-Shadow Removal
http://www.fs.fed.us/global/iitf/pubs/iitf-gtr32.pdf
● Converting Digital Numbers to Top of Atmosphere (ToA) Reflectance
http://www.yale.edu/ceo/Documentation/Landsat_DN_to_Reflectance.pdf
● Summary of current radiometric calibration coefficients for Landsat MSS, TM, ETM+,
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