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Bioinformatics On Genomics
Hsueh-Fen Yuki Juan
April 28, 2003
Outline Gene Sequence Searching Cutting Site for a Specific Sequence Sequence Alignment Search for Conserved Domains ORF Finding
Gene Sequence Searching Cutting Site for a Specific Sequence Sequence Alignment Search for Conserved Domains ORF Finding
Accession Number
Gene Sequence
Gene Sequence Searching
http://www.ncbi.nlm.nih.gov/UniGene/
AA046701AA069414AA070289AA446013AA425102
GGGGGGGGGAAGCTGAGCGCTGAGACCAAGGGCTAAAGCTGGGAGACTGAAAAAATGCAGACCGCCGGGGCATTATTCATTTCTCCAGCTCTGATCCGCTGTTGTACCAGGGGTCTAATCAGGCCTGTGTCTGCCTCCTTCTTGAATAGCCCAGTGAATTCATCTAAACAGCCTTCCTACAGCAACTTCCCACTCCAGGTGGCCAGACGGGAGTTCCAGACCAGTGTTGTCTCCCGGGACATTGACACAGCAGCCAAGTTTATTGGTGCTGGGGCAGCCACAGTTGGTGTGGCTGGTTCAGGGGCTGGCATTGGAACCGTGTTTGGCAGCTTGATCATTGGCTATGCCAGGAACCCGTCTCTCAAGCAGCAGCTCTTCTCCTATGCCATTCTTGGCTTTGCCCTGTCTGAGGCCATGGGGCTTTTCTGTTTGATGGTCGCCTTCCTCATCCTCTTCGCCATGTGAGGCTCCATGGGGGGTCACCGGCCTGTTGCTACTGCAACTCCACACCATTCTTGGTGCTGGGGTGTGTTAAGCTTTACCATTAAACACAACGTTTCTCTAAAAAAAAAAAAAAAAAAAAC
Gene Sequence Searching Cutting Site for a Specific Sequence Sequence Alignment Search for Conserved Domains ORF Finding
Cutting Site for a Specific SequenceSequence
Cut by Restriction Enzymes1. RestrictionMapper2. REBASE3. NEBcutter4. DARWIN
RestrictionMapperhttp://www.restrictionmapper.org
REBASERebase.neb.com/rebase.html
DARWINhttp://darwin.bio.geneseo.edu/~yin/WebGene/RE.html
Gene Sequence Searching Cutting Site for a Specific Sequence Sequence Alignment Search for Conserved Domains ORF Finding Primary Structure Analysis: Amino a
cid composition, pI and MW Protein Sequence Searching Proteomics Tools
Input Query
Amino Acid Sequence DNA Sequence
Blastp tblastn blastn blastx tblastx
Compares Against protein Sequence Database
Compares Against Translated Nucleotide Sequence Database
Compares Against Nucleotide Sequence Database
Compares Against protein Sequence Database
Compares Against Translated Nucleotide Sequence Database
Sequence Alignment
http://www.ncbi.nlm.nih.gov/
BLAST
Copy Sequence
Pairwise BLAST
Gene Sequence Searching Cutting Site for a Specific Sequence Sequence Alignment Search for Conserved Domains ORF Finding
Search for Conserved Domains
Gene Sequence Searching Cutting Site for a Specific Sequence Sequence Alignment Search for Conserved Domains ORF Finding
ORF Finder (Open Reading Frame Finder)http://www.ncbi.nlm.nih.gov/gorf/
Useful Bio-WebsiteseuGene
http://iubio.bio.indiana.edu:8089/
Proteome Analysis @EBI
http://www.ebi.ac.uk/proteome/
GeneCards
http://genecards.ym.edu.tw/