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BLAST Basic Local Alignment Search Tooldavid.glascofamily.com/sb228/assignments/assignment… ·...

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Job Title: Patient 1 Show Conserved Domains No putative conserved domains have been detected BLASTP 2.2.17 (Aug-26-2007) Reference : Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference : Schäffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. RID: JPSPC90Y01R Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 5,606,858 sequences; 1,939,001,769 total letters Query= Length=12 Distribution of 100 Blast Hits on the Query Sequence BLAST Basic Local Alignment Search Tool Your search parameters were adjusted to search for a short input sequence. Your search is limited to records matching entrez query: txid9606 [ORGN]. Page 1 of 35 NCBI Blast:Patient 1 11/2/2007 http://www.ncbi.nlm.nih.gov/BLAST/Blast.cgi?CMD=Get&VIEW_RESULTS=FromRes...
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Page 1: BLAST Basic Local Alignment Search Tooldavid.glascofamily.com/sb228/assignments/assignment… ·  · 2007-11-02Job Title: Patient 1 Show Conserved Domains No putative conserved domains

Job Title: Patient 1

Show Conserved Domains No putative conserved domains have been detected

BLASTP 2.2.17 (Aug-26-2007)

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,

Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped

BLAST and PSI-BLAST: a new generation of protein database search programs",

Nucleic Acids Res. 25:3389-3402. Reference: Schäffer, Alejandro A., L.

Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf,

Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of

PSI-BLAST protein database searches with composition-based statistics and

other refinements", Nucleic Acids Res. 29:2994-3005. RID: JPSPC90Y01R

Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF

excluding environmental samples from WGS projects 5,606,858 sequences;

1,939,001,769 total letters

Query= Length=12

Distribution of 100 Blast Hits on the Query Sequence

BLAST Basic Local Alignment Search Tool

� Your search parameters were adjusted to search for a short input sequence. � Your search is limited to records matching entrez query: txid9606 [ORGN]. �

Page 1 of 35NCBI Blast:Patient 1

11/2/2007http://www.ncbi.nlm.nih.gov/BLAST/Blast.cgi?CMD=Get&VIEW_RESULTS=FromRes...

Page 2: BLAST Basic Local Alignment Search Tooldavid.glascofamily.com/sb228/assignments/assignment… ·  · 2007-11-02Job Title: Patient 1 Show Conserved Domains No putative conserved domains

Page 2 of 35NCBI Blast:Patient 1

11/2/2007http://www.ncbi.nlm.nih.gov/BLAST/Blast.cgi?CMD=Get&VIEW_RESULTS=FromRes...

Page 3: BLAST Basic Local Alignment Search Tooldavid.glascofamily.com/sb228/assignments/assignment… ·  · 2007-11-02Job Title: Patient 1 Show Conserved Domains No putative conserved domains

Distance tree of results Related Structures

Score E

Sequences producing significant alignments: (Bits) Value

gb|AAK15811.1| mutant hemoglobin beta chain [Homo sapiens] 37.5 0.004

gb|AAQ63175.1| mutant hemoglobin beta chain [Homo sapiens] 37.1 0.004

gb|ABL84269.1| beta-globin [Homo sapiens] 36.7 0.006

emb|CAA23759.1| unnamed protein product [Homo sapiens] >gb|AA... 36.3 0.008

gb|AAN11320.1| hemoglobin beta chain variant Hb S-Wake [Homo sap 36.3 0.008

pdb|1HBS|B Chain B, Refined Crystal Structure Of Deoxyhemoglo... 36.3 0.008

gb|AAF08259.1| beta-globin [Homo sapiens] >gb|AAF08266.1| bet... 35.4 0.014

gb|AAC97959.1| beta globin [Homo sapiens] 32.9 0.092

gb|AAK20080.1| mutant beta globin [Homo sapiens] 32.5 0.12

gb|ABA19233.1| hemoglobin beta [Homo sapiens] 32.5 0.12

gb|AAA35952.1| beta-globin 32.5 0.13

gb|AAN16468.1| hemoglobin beta chain variant Hb.Sinai-Bel Air [H 32.0 0.14

gb|AAA52635.1| hbbm fused globin protein [Homo sapiens] 32.0 0.14

gb|ABG47031.1| hemoglobin [Homo sapiens] 32.0 0.15

gb|AAT36651.1| hemoglobin beta [Homo sapiens] 32.0 0.15

gb|AAN11321.1| hemoglobin beta chain variant Hb-I_Toulouse [Homo 32.0 0.15

gb|AAY46275.1| beta globin chain [Homo sapiens] 32.0 0.16

gb|AAA99224.1| beta-globin 32.0 0.17

gb|AAD30656.1| mutant beta-globin [Homo sapiens] 32.0 0.17

gb|AAC97372.1| beta globin [Homo sapiens] 32.0 0.18

gb|AAY84735.1| hemoglobin beta chain [Homo sapiens] 32.0 0.18

gb|AAG46184.1| mutant beta-globin [Homo sapiens] >gb|AAG46185... 31.6 0.19

gb|AAZ22545.1| truncated hemoglobin beta chain [Homo sapiens] 31.6 0.21

gb|AAA35597.1| beta-globin 31.6 0.22

gb|AAA88057.1| beta-globin 31.6 0.23

gb|AAK29639.1|AF349114_1 beta globin chain variant [Homo sapiens 31.6 0.24

gb|AAN84548.1| beta globin chain variant [Homo sapiens] 31.2 0.25

gb|AAK28066.1|AF319479_1 truncated beta-globin [Homo sapiens] 31.2 0.25

pdb|1HDB|B Chain B, Analysis Of The Crystal Structure, Molecu... 31.2 0.26

ref|NP_000509.1| beta globin [Homo sapiens] >sp|P68871|HBB_HU... 31.2 0.26

pdb|1Y85|B Chain B, T-To-T(High) Quaternary Transitions In Hu... 31.2 0.26

gb|AAL68978.1|AF083883_1 mutant beta-globin [Homo sapiens] 31.2 0.26

gb|AAF00489.1|AF181989_1 hemoglobin beta subunit variant [Hom... 31.2 0.26

pdb|1NQP|B Chain B, Crystal Structure Of Human Hemoglobin E A... 31.2 0.26

pdb|1CMY|B Chain B, The Mutation Beta99 Asp-Tyr Stabilizes Y-... 31.2 0.26

gb|AAR96398.1| hemoglobin beta [Homo sapiens] 31.2 0.26

gb|AAK30154.1| beta-globin [Homo sapiens] 31.2 0.26

pdb|1COH|B Chain B, Structure Of Haemoglobin In The Deoxy Qua... 31.2 0.26

gb|AAD19696.1| hemoglobin beta chain [Homo sapiens] 31.2 0.27

pdb|1GBV|B Chain B, (Alpha-Oxy, Beta-(C112g)deoxy) T-State Hu... 31.2 0.27

pdb|1HBA|B Chain B, High-Resolution X-Ray Study Of Deoxyhemog... 31.2 0.28

gb|ABB82620.1| mutant beta-globin [Homo sapiens] 31.2 0.29

Page 3 of 35NCBI Blast:Patient 1

11/2/2007http://www.ncbi.nlm.nih.gov/BLAST/Blast.cgi?CMD=Get&VIEW_RESULTS=FromRes...

Page 4: BLAST Basic Local Alignment Search Tooldavid.glascofamily.com/sb228/assignments/assignment… ·  · 2007-11-02Job Title: Patient 1 Show Conserved Domains No putative conserved domains

pdb|1BUW|B Chain B, Crystal Structure Of S-Nitroso-Nitrosyl H... 31.2 0.29

pdb|1GBU|B Chain B, Deoxy (Beta-(C93a,C112g)) Human Hemoglobi... 31.2 0.29

prf||610523A hemoglobin beta 31.2 0.30

gb|AAA53153.1| beta-hemoglobin >gb|AAF08258.1| beta-globin [H... 30.8 0.34

pdb|1CH4|A Chain A, Module-Substituted Chimera Hemoglobin Bet... 30.8 0.41

gb|AAZ39780.1| beta globin [Homo sapiens] >gb|AAZ39781.1| bet... 30.3 0.49

pdb|1K1K|B Chain B, Structure Of Mutant Human Carbonmonoxyhem... 30.3 0.51

gb|AAG28779.1|AF305829_1 mutant beta-globin [Homo sapiens] 29.5 0.86

gb|AAY15222.1| beta globin [Homo sapiens] 29.5 0.89

gb|AAP44006.1| beta globin variant [Homo sapiens] 29.5 0.91

gb|AAG46182.1| mutant beta-globin [Homo sapiens] 29.5 0.92

gb|AAA16335.1| beta-globin thalassemia [Homo sapiens] >gb|AAA... 29.5 0.94

pdb|1O1K|B Chain B, Deoxy Hemoglobin (A,C:v1m; B,D:v1m,V67w) ... 29.1 1.2

pdb|1Y2Z|B Chain B, T-To-T(High) Quaternary Transitions In Hu... 29.1 1.3

pdb|1QI8|B Chain B, Deoxygenated Structure Of A Distal Pocket... 29.1 1.3

gb|AAP74754.1| beta-globin [Homo sapiens] >emb|CAI40296.1| he... 29.1 1.3

pdb|1O1O|B Chain B, Deoxy Hemoglobin (A,C:v1m,V62l; B,D:v1m,V... 29.1 1.3

pdb|1YE0|B Chain B, T-To-T(High) Quaternary Transitions In Hu... 29.1 1.3

pdb|1Y7D|B Chain B, T-To-T(High) Quaternary Transitions In Hu... 29.1 1.4

pdb|1YGF|B Chain B, T-To-T(High) Quaternary Transitions In Hu... 28.6 1.4

pdb|1O1I|B Chain B, Cyanomet Hemoglobin (A-Gly-C:v1m,L29f,H58... 28.6 1.4

pdb|1YIH|B Chain B, T-To-T(High) Quaternary Transitions In Hu... 28.6 1.5

pdb|1YEN|B Chain B, T-To-T(High) Quaternary Transitions In Hu... 28.6 1.5

gb|AAA88069.1| beta-globin 28.6 1.5

pdb|1YE2|B Chain B, T-To-T(High) Quaternary Transitions In Hu... 28.6 1.5

pdb|1DXU|B Chain B, High-Resolution X-Ray Study Of Deoxy Reco... 28.6 1.5

pdb|1A00|B Chain B, Hemoglobin (Val Beta1 Met, Trp Beta37 Tyr... 28.6 1.5

pdb|1Y5F|B Chain B, T-To-T(High) Quaternary Transitions In Hu... 28.6 1.6

pdb|1Y83|B Chain B, T-To-T(High) Quaternary Transitions In Hu... 28.6 1.6

pdb|1YEU|B Chain B, T-To-T(High) Quaternary Transitions In Hu... 28.6 1.6

pdb|1ABY|B Chain B, Cyanomet Rhb1.1 (Recombinant Hemoglobin) ... 28.6 1.6

pdb|1Y7Z|B Chain B, T-To-T(High) Quaternary Transitions In Hu... 28.6 1.6

pdb|1Y7G|B Chain B, T-To-T(High) Quaternary Transitions In Hu... 28.6 1.6

pdb|1DXV|B Chain B, High-Resolution X-Ray Study Of Deoxy Reco... 28.6 1.6

pdb|1Y4V|B Chain B, T-To-T(High) Quaternary Transitions In Hu... 28.6 1.6

pdb|1Y4Q|B Chain B, T-To-T(High) Quaternary Transitions In Hu... 28.6 1.6

pdb|1Y4R|B Chain B, T-To-T(High) Quaternary Transitions In Hu... 28.6 1.6

pdb|1Y5K|B Chain B, T-To-T(High) Quaternary Transitions In Hu... 28.6 1.6

pdb|1YE1|B Chain B, T-To-T(High) Quaternary Transitions In Hu... 28.6 1.6

pdb|1RQA|B Chain B, Crystallographic Analysis Of The Interact... 28.6 1.6

pdb|1A01|B Chain B, Hemoglobin (Val Beta1 Met, Trp Beta37 Ala... 28.6 1.6

pdb|1O1P|B Chain B, Deoxy Hemoglobin (A-Gly-C:v1m; B,D:v1m,C9... 28.6 1.7

pdb|1YG5|B Chain B, T-To-T(High) Quaternary Transitions In Hu... 28.6 1.7

gb|AAB60348.1| beta globin [Homo sapiens] 28.6 1.8

gb|AAG28778.1|AF305716_1 truncated beta-globin [Homo sapiens]... 28.2 2.3

gb|AAK39553.1|AF358870_1 truncated hemoglobin beta chain [Homo s 28.2 2.4

Page 4 of 35NCBI Blast:Patient 1

11/2/2007http://www.ncbi.nlm.nih.gov/BLAST/Blast.cgi?CMD=Get&VIEW_RESULTS=FromRes...

Page 5: BLAST Basic Local Alignment Search Tooldavid.glascofamily.com/sb228/assignments/assignment… ·  · 2007-11-02Job Title: Patient 1 Show Conserved Domains No putative conserved domains

pdb|6HBW|B Chain B, Crystal Structure Of Deoxy-Human Hemoglob... 27.8 2.7

gb|AAP03091.1| beta-globin [Homo sapiens] 27.8 2.7

gb|AAA88055.1| beta-globin 27.8 3.3

gb|AAZ83699.1| delta-globin Troodos variant [Homo sapiens] 27.4 4.5

gb|AAZ16491.1| hemoglobin delta Etolia variant [Homo sapiens] 27.4 4.5

ref|NP_000510.1| delta globin [Homo sapiens] >sp|P02042|HBD_H... 27.4 4.5

pdb|1SHR|B Chain B, Crystal Structure Of Ferrocyanide Bound H... 26.9 4.8

gb|AAU08171.1| hemoglobin Lepore-Baltimore [Homo sapiens] 26.9 4.8

prf||640488A hemoglobin delta 26.9 4.8

gb|AAA53154.1| beta-hemoglobin 26.5 7.8

dbj|BAD92939.1| protein tyrosine phosphatase, receptor type, ... 25.7 11

gb|AAD34034.1|AF083884_1 mutant beta-globin [Homo sapiens] 25.7 12

>gb|AAK15811.1| mutant hemoglobin beta chain [Homo sapiens] Length=105 Score = 37.5 bits (81), Expect = 0.004, Method: Composition-based stats. Identities = 12/12 (100%), Positives = 12/12 (100%), Gaps = 0/12 (0%) Query 1 VHLTPVEKSAVT 12 VHLTPVEKSAVT Sbjct 2 VHLTPVEKSAVT 13

>gb|AAQ63175.1| mutant hemoglobin beta chain [Homo sapiens] Length=105 Score = 37.1 bits (80), Expect = 0.004, Method: Composition-based stats. Identities = 12/12 (100%), Positives = 12/12 (100%), Gaps = 0/12 (0%) Query 1 VHLTPVEKSAVT 12 VHLTPVEKSAVT Sbjct 2 VHLTPVEKSAVT 13 >gb|ABL84269.1| beta-globin [Homo sapiens] Length=105 Score = 36.7 bits (79), Expect = 0.006, Method: Composition-based stats. Identities = 12/12 (100%), Positives = 12/12 (100%), Gaps = 0/12 (0%) Query 1 VHLTPVEKSAVT 12 VHLTPVEKSAVT Sbjct 2 VHLTPVEKSAVT 13

>emb|CAA23759.1| unnamed protein product [Homo sapiens]

gb|AAA35966.1| sickle beta-hemoglobin Length=147 Score = 36.3 bits (78), Expect = 0.008, Method: Composition-based stats. Identities = 12/12 (100%), Positives = 12/12 (100%), Gaps = 0/12 (0%) Query 1 VHLTPVEKSAVT 12 VHLTPVEKSAVT Sbjct 2 VHLTPVEKSAVT 13

>gb|AAN11320.1| hemoglobin beta chain variant Hb S-Wake [Homo sapiens] Length=147

Alignments

Page 5 of 35NCBI Blast:Patient 1

11/2/2007http://www.ncbi.nlm.nih.gov/BLAST/Blast.cgi?CMD=Get&VIEW_RESULTS=FromRes...

Page 6: BLAST Basic Local Alignment Search Tooldavid.glascofamily.com/sb228/assignments/assignment… ·  · 2007-11-02Job Title: Patient 1 Show Conserved Domains No putative conserved domains

Score = 36.3 bits (78), Expect = 0.008, Method: Composition-based stats. Identities = 12/12 (100%), Positives = 12/12 (100%), Gaps = 0/12 (0%) Query 1 VHLTPVEKSAVT 12 VHLTPVEKSAVT Sbjct 2 VHLTPVEKSAVT 13

>pdb|1HBS|B Chain B, Refined Crystal Structure Of Deoxyhemoglobin S. I. Restrained Least-Squares Refinement At 3.0-Angstroms Resolution

pdb|1HBS|D Chain D, Refined Crystal Structure Of Deoxyhemoglobin S. I. Restrained Least-Squares Refinement At 3.0-Angstroms Resolution

pdb|1HBS|F Chain F, Refined Crystal Structure Of Deoxyhemoglobin S. I. Restrained Least-Squares Refinement At 3.0-Angstroms Resolution

pdb|1HBS|H Chain H, Refined Crystal Structure Of Deoxyhemoglobin S. I. Restrained Least-Squares Refinement At 3.0-Angstroms Resolution

pdb|2HBS|B Chain B, The High Resolution Crystal Structure Of Deoxyhemoglobin S

pdb|2HBS|D Chain D, The High Resolution Crystal Structure Of Deoxyhemoglobin S

pdb|2HBS|F Chain F, The High Resolution Crystal Structure Of Deoxyhemoglobin S

pdb|2HBS|H Chain H, The High Resolution Crystal Structure Of Deoxyhemoglobin S

pdb|1NEJ|B Chain B, Crystalline Human Carbonmonoxy Hemoglobin S (Liganded Sickle Cell Hemoglobin) Exhibits The R2 Quaternary State At Neutral Ph In The Presence Of Polyethylene Glycol: The 2.1 Angstrom Resolution Crystal Structure

pdb|1NEJ|D Chain D, Crystalline Human Carbonmonoxy Hemoglobin S (Liganded Sickle Cell Hemoglobin) Exhibits The R2 Quaternary State At Neutral Ph In The Presence Of Polyethylene Glycol: The 2.1 Angstrom Resolution Crystal Structure Length=146 Score = 36.3 bits (78), Expect = 0.008, Method: Composition-based stats. Identities = 12/12 (100%), Positives = 12/12 (100%), Gaps = 0/12 (0%) Query 1 VHLTPVEKSAVT 12 VHLTPVEKSAVT Sbjct 1 VHLTPVEKSAVT 12

>gb|AAF08259.1| beta-globin [Homo sapiens]

gb|AAF08266.1| beta-globin [Homo sapiens] Length=61 Score = 35.4 bits (76), Expect = 0.014, Method: Composition-based stats. Identities = 12/12 (100%), Positives = 12/12 (100%), Gaps = 0/12 (0%) Query 1 VHLTPVEKSAVT 12 VHLTPVEKSAVT Sbjct 2 VHLTPVEKSAVT 13

>gb|AAC97959.1| beta globin [Homo sapiens] Length=30 Score = 32.9 bits (70), Expect = 0.092, Method: Composition-based stats. Identities = 12/12 (100%), Positives = 12/12 (100%), Gaps = 0/12 (0%) Query 1 VHLTPVEKSAVT 12 VHLTPVEKSAVT Sbjct 2 VHLTPVEKSAVT 13

Page 6 of 35NCBI Blast:Patient 1

11/2/2007http://www.ncbi.nlm.nih.gov/BLAST/Blast.cgi?CMD=Get&VIEW_RESULTS=FromRes...

Page 7: BLAST Basic Local Alignment Search Tooldavid.glascofamily.com/sb228/assignments/assignment… ·  · 2007-11-02Job Title: Patient 1 Show Conserved Domains No putative conserved domains

>gb|AAK20080.1| mutant beta globin [Homo sapiens] Length=111 Score = 32.5 bits (69), Expect = 0.12, Method: Composition-based stats. Identities = 11/12 (91%), Positives = 11/12 (91%), Gaps = 0/12 (0%) Query 1 VHLTPVEKSAVT 12 VHLTP EKSAVT Sbjct 2 VHLTPEEKSAVT 13

>gb|ABA19233.1| hemoglobin beta [Homo sapiens] Length=105 Score = 32.5 bits (69), Expect = 0.12, Method: Composition-based stats. Identities = 11/12 (91%), Positives = 11/12 (91%), Gaps = 0/12 (0%) Query 1 VHLTPVEKSAVT 12 VHLTP EKSAVT Sbjct 2 VHLTPEEKSAVT 13

>gb|AAA35952.1| beta-globin Length=175 Score = 32.5 bits (69), Expect = 0.13, Method: Composition-based stats. Identities = 11/12 (91%), Positives = 11/12 (91%), Gaps = 0/12 (0%) Query 1 VHLTPVEKSAVT 12 VHLTP EKSAVT Sbjct 2 VHLTPEEKSAVT 13

>gb|AAN16468.1| hemoglobin beta chain variant Hb.Sinai-Bel Air [Homo sapiens] Length=105 Score = 32.0 bits (68), Expect = 0.14, Method: Composition-based stats. Identities = 11/12 (91%), Positives = 11/12 (91%), Gaps = 0/12 (0%) Query 1 VHLTPVEKSAVT 12 VHLTP EKSAVT Sbjct 2 VHLTPEEKSAVT 13

>gb|AAA52635.1| hbbm fused globin protein [Homo sapiens] Length=101 Score = 32.0 bits (68), Expect = 0.14, Method: Composition-based stats. Identities = 11/12 (91%), Positives = 11/12 (91%), Gaps = 0/12 (0%) Query 1 VHLTPVEKSAVT 12 VHLTP EKSAVT Sbjct 2 VHLTPEEKSAVT 13

>gb|ABG47031.1| hemoglobin [Homo sapiens] Length=105 Score = 32.0 bits (68), Expect = 0.15, Method: Composition-based stats. Identities = 11/12 (91%), Positives = 11/12 (91%), Gaps = 0/12 (0%) Query 1 VHLTPVEKSAVT 12 VHLTP EKSAVT Sbjct 2 VHLTPEEKSAVT 13

>gb|AAT36651.1| hemoglobin beta [Homo sapiens] Length=105 Score = 32.0 bits (68), Expect = 0.15, Method: Composition-based stats. Identities = 11/12 (91%), Positives = 11/12 (91%), Gaps = 0/12 (0%)

Page 7 of 35NCBI Blast:Patient 1

11/2/2007http://www.ncbi.nlm.nih.gov/BLAST/Blast.cgi?CMD=Get&VIEW_RESULTS=FromRes...

Page 8: BLAST Basic Local Alignment Search Tooldavid.glascofamily.com/sb228/assignments/assignment… ·  · 2007-11-02Job Title: Patient 1 Show Conserved Domains No putative conserved domains

Query 1 VHLTPVEKSAVT 12 VHLTP EKSAVT Sbjct 2 VHLTPEEKSAVT 13

>gb|AAN11321.1| hemoglobin beta chain variant Hb-I_Toulouse [Homo sapiens] Length=105 Score = 32.0 bits (68), Expect = 0.15, Method: Composition-based stats. Identities = 11/12 (91%), Positives = 11/12 (91%), Gaps = 0/12 (0%) Query 1 VHLTPVEKSAVT 12 VHLTP EKSAVT Sbjct 2 VHLTPEEKSAVT 13

>gb|AAY46275.1| beta globin chain [Homo sapiens] Length=105 Score = 32.0 bits (68), Expect = 0.16, Method: Composition-based stats. Identities = 11/12 (91%), Positives = 11/12 (91%), Gaps = 0/12 (0%) Query 1 VHLTPVEKSAVT 12 VHLTP EKSAVT Sbjct 2 VHLTPEEKSAVT 13

>gb|AAA99224.1| beta-globin Length=60 Score = 32.0 bits (68), Expect = 0.17, Method: Composition-based stats. Identities = 11/12 (91%), Positives = 11/12 (91%), Gaps = 0/12 (0%) Query 1 VHLTPVEKSAVT 12 VHLTP EKSAVT Sbjct 2 VHLTPEEKSAVT 13

>gb|AAD30656.1| mutant beta-globin [Homo sapiens] Length=89 Score = 32.0 bits (68), Expect = 0.17, Method: Composition-based stats. Identities = 11/12 (91%), Positives = 11/12 (91%), Gaps = 0/12 (0%) Query 1 VHLTPVEKSAVT 12 VHLTP EKSAVT Sbjct 2 VHLTPEEKSAVT 13

>gb|AAC97372.1| beta globin [Homo sapiens] Length=57 Score = 32.0 bits (68), Expect = 0.18, Method: Composition-based stats. Identities = 11/12 (91%), Positives = 11/12 (91%), Gaps = 0/12 (0%) Query 1 VHLTPVEKSAVT 12 VHLTP EKSAVT Sbjct 2 VHLTPEEKSAVT 13

>gb|AAY84735.1| hemoglobin beta chain [Homo sapiens] Length=105 Score = 32.0 bits (68), Expect = 0.18, Method: Composition-based stats. Identities = 11/12 (91%), Positives = 11/12 (91%), Gaps = 0/12 (0%) Query 1 VHLTPVEKSAVT 12 VHLTP EKSAVT Sbjct 2 VHLTPEEKSAVT 13

Page 8 of 35NCBI Blast:Patient 1

11/2/2007http://www.ncbi.nlm.nih.gov/BLAST/Blast.cgi?CMD=Get&VIEW_RESULTS=FromRes...

Page 9: BLAST Basic Local Alignment Search Tooldavid.glascofamily.com/sb228/assignments/assignment… ·  · 2007-11-02Job Title: Patient 1 Show Conserved Domains No putative conserved domains

>gb|AAG46184.1| mutant beta-globin [Homo sapiens]

gb|AAG46185.1| beta-globin [Homo sapiens] Length=115 Score = 31.6 bits (67), Expect = 0.19, Method: Composition-based stats. Identities = 11/12 (91%), Positives = 11/12 (91%), Gaps = 0/12 (0%) Query 1 VHLTPVEKSAVT 12 VHLTP EKSAVT Sbjct 2 VHLTPEEKSAVT 13 >gb|AAZ22545.1| truncated hemoglobin beta chain [Homo sapiens] Length=60 Score = 31.6 bits (67), Expect = 0.21, Method: Composition-based stats. Identities = 11/12 (91%), Positives = 11/12 (91%), Gaps = 0/12 (0%) Query 1 VHLTPVEKSAVT 12 VHLTP EKSAVT Sbjct 2 VHLTPEEKSAVT 13

>gb|AAA35597.1| beta-globin Length=147 Score = 31.6 bits (67), Expect = 0.22, Method: Composition-based stats. Identities = 11/12 (91%), Positives = 11/12 (91%), Gaps = 0/12 (0%) Query 1 VHLTPVEKSAVT 12 VH TPVEKSAVT Sbjct 2 VHXTPVEKSAVT 13

>gb|AAA88057.1| beta-globin Length=60 Score = 31.6 bits (67), Expect = 0.23, Method: Composition-based stats. Identities = 11/12 (91%), Positives = 11/12 (91%), Gaps = 0/12 (0%) Query 1 VHLTPVEKSAVT 12 VHLTP EKSAVT Sbjct 2 VHLTPEEKSAVT 13

>gb|AAK29639.1|AF349114_1 beta globin chain variant [Homo sapiens] Length=147 Score = 31.6 bits (67), Expect = 0.24, Method: Composition-based stats. Identities = 11/12 (91%), Positives = 11/12 (91%), Gaps = 0/12 (0%) Query 1 VHLTPVEKSAVT 12 VHLTP EKSAVT Sbjct 2 VHLTPEEKSAVT 13

>gb|AAN84548.1| beta globin chain variant [Homo sapiens] Length=147 Score = 31.2 bits (66), Expect = 0.25, Method: Composition-based stats. Identities = 11/12 (91%), Positives = 11/12 (91%), Gaps = 0/12 (0%) Query 1 VHLTPVEKSAVT 12 VHLTP EKSAVT Sbjct 2 VHLTPEEKSAVT 13

>gb|AAK28066.1|AF319479_1 truncated beta-globin [Homo sapiens] Length=59

Page 9 of 35NCBI Blast:Patient 1

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Score = 31.2 bits (66), Expect = 0.25, Method: Composition-based stats. Identities = 11/12 (91%), Positives = 11/12 (91%), Gaps = 0/12 (0%) Query 1 VHLTPVEKSAVT 12 VHLTP EKSAVT Sbjct 2 VHLTPEEKSAVT 13

>pdb|1HDB|B Chain B, Analysis Of The Crystal Structure, Molecular Modeling And Infrared Spectroscopy Of The Distal Beta-Heme Pocket Valine67(E11)-Threonine Mutation Of Hemoglobin

pdb|1HDB|D Chain D, Analysis Of The Crystal Structure, Molecular Modeling And Infrared Spectroscopy Of The Distal Beta-Heme Pocket Valine67(E11)-Threonine Mutation Of Hemoglobin Length=146 Score = 31.2 bits (66), Expect = 0.26, Method: Composition-based stats. Identities = 11/12 (91%), Positives = 11/12 (91%), Gaps = 0/12 (0%) Query 1 VHLTPVEKSAVT 12 VHLTP EKSAVT Sbjct 1 VHLTPEEKSAVT 12

>ref|NP_000509.1| beta globin [Homo sapiens]

sp|P68871|HBB_HUMAN Hemoglobin subunit beta (Hemoglobin beta chain) (Beta-globin) [Contains: LVV-hemorphin-7]

pdb|1DXT|B Chain B, High-Resolution X-Ray Study Of Deoxy Recombinant Human Hemoglobins Synthesized From Beta-Globins Having Mutated Amino Termini

pdb|1DXT|D Chain D, High-Resolution X-Ray Study Of Deoxy Recombinant Human Hemoglobins Synthesized From Beta-Globins Having Mutated Amino Termini

gb|AAM92001.1|AF527577_1 beta globin mutant [Homo sapiens]

emb|CAA23756.1| unnamed protein product [Homo sapiens]

emb|CAA23758.1| beta globin [Homo sapiens]

gb|AAA52634.1| beta hemoglobin

gb|AAA16334.1| beta-globin [Homo sapiens]

gb|AAA21100.1| beta-globin

gb|AAA21101.1| beta-globin

gb|AAA21103.1| beta-globin

gb|AAA21104.1| beta-globin

gb|AAA21105.1| beta-globin

gb|AAA21106.1| beta-globin

gb|AAA21107.1| beta-globin

gb|AAA21108.1| beta-globin

gb|AAA21102.1| beta-globin

gb|AAA21109.1| beta-globin

gb|AAA21110.1| beta-globin

gb|AAA21111.1| beta-globin

gb|AAA21112.1| beta-globin

gb|AAA21113.1| beta-globin

gb|AAA21114.1| beta-globin

gb|AAA21115.1| beta-globin

gb|AAA21116.1| beta-globin

gb|AAA88063.1| beta-globin

Page 10 of 35NCBI Blast:Patient 1

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gb|AAA88061.1| beta-globin

gb|AAA88059.1| beta-globin

gb|AAA88065.1| beta-globin

gb|AAA88067.1| beta-globin

gb|AAB62944.1| beta-globin [Homo sapiens]

gb|AAH07075.1| Hemoglobin, beta [Homo sapiens]

gb|AAP21062.1| beta globin chain [Homo sapiens]

emb|CAG38767.1| HBB [Homo sapiens]

emb|CAG46711.1| HBB [Homo sapiens]

gb|AAZ39745.1| beta globin [Homo sapiens]

gb|AAZ39746.1| beta globin [Homo sapiens]

gb|AAZ39747.1| beta globin [Homo sapiens]

gb|AAZ39748.1| beta globin [Homo sapiens]

gb|AAZ39749.1| beta globin [Homo sapiens]

gb|AAZ39750.1| beta globin [Homo sapiens]

gb|AAZ39751.1| beta globin [Homo sapiens]

gb|AAZ39752.1| beta globin [Homo sapiens]

gb|AAZ39753.1| beta globin [Homo sapiens]

gb|AAZ39754.1| beta globin [Homo sapiens]

gb|AAZ39755.1| beta globin [Homo sapiens]

gb|AAZ39756.1| beta globin [Homo sapiens]

gb|AAZ39757.1| beta globin [Homo sapiens]

gb|AAZ39758.1| beta globin [Homo sapiens]

gb|AAZ39759.1| beta globin [Homo sapiens]

gb|AAZ39760.1| beta globin [Homo sapiens]

gb|AAZ39761.1| beta globin [Homo sapiens]

gb|AAZ39762.1| beta globin [Homo sapiens]

gb|AAZ39763.1| beta globin [Homo sapiens]

gb|AAZ39764.1| beta globin [Homo sapiens]

gb|AAZ39765.1| beta globin [Homo sapiens]

gb|AAZ39766.1| beta globin [Homo sapiens]

gb|AAZ39767.1| beta globin [Homo sapiens]

gb|AAZ39768.1| beta globin [Homo sapiens]

gb|AAZ39769.1| beta globin [Homo sapiens]

gb|AAZ39770.1| beta globin [Homo sapiens]

gb|AAZ39771.1| beta globin [Homo sapiens]

gb|AAZ39772.1| beta globin [Homo sapiens]

gb|AAZ39773.1| beta globin [Homo sapiens]

gb|AAZ39774.1| beta globin [Homo sapiens]

gb|AAZ39775.1| beta globin [Homo sapiens]

gb|AAZ39776.1| beta globin [Homo sapiens]

gb|AAZ39777.1| beta globin [Homo sapiens]

gb|AAZ39778.1| beta globin [Homo sapiens]

gb|AAZ39779.1| beta globin [Homo sapiens]

gb|EAW68806.1| hemoglobin, beta [Homo sapiens]

Page 11 of 35NCBI Blast:Patient 1

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gb|ABO36678.1| beta globin chain [Homo sapiens] Length=147 Score = 31.2 bits (66), Expect = 0.26, Method: Composition-based stats. Identities = 11/12 (91%), Positives = 11/12 (91%), Gaps = 0/12 (0%) Query 1 VHLTPVEKSAVT 12 VHLTP EKSAVT Sbjct 2 VHLTPEEKSAVT 13

>pdb|1Y85|B Chain B, T-To-T(High) Quaternary Transitions In Human Hemoglobin: Deshis146beta Deoxy Low-Salt

pdb|1Y85|D Chain D, T-To-T(High) Quaternary Transitions In Human Hemoglobin: Deshis146beta Deoxy Low-Salt Length=145 Score = 31.2 bits (66), Expect = 0.26, Method: Composition-based stats. Identities = 11/12 (91%), Positives = 11/12 (91%), Gaps = 0/12 (0%) Query 1 VHLTPVEKSAVT 12 VHLTP EKSAVT Sbjct 1 VHLTPEEKSAVT 12

>gb|AAL68978.1|AF083883_1 mutant beta-globin [Homo sapiens] Length=147 Score = 31.2 bits (66), Expect = 0.26, Method: Composition-based stats. Identities = 11/12 (91%), Positives = 11/12 (91%), Gaps = 0/12 (0%) Query 1 VHLTPVEKSAVT 12 VHLTP EKSAVT Sbjct 2 VHLTPEEKSAVT 13

>gb|AAF00489.1|AF181989_1 hemoglobin beta subunit variant [Homo sapiens]

gb|AAA88054.1| beta-globin Length=147 Score = 31.2 bits (66), Expect = 0.26, Method: Composition-based stats. Identities = 11/12 (91%), Positives = 11/12 (91%), Gaps = 0/12 (0%) Query 1 VHLTPVEKSAVT 12 VHLTP EKSAVT Sbjct 2 VHLTPEEKSAVT 13

>pdb|1NQP|B Chain B, Crystal Structure Of Human Hemoglobin E At 1.73 A Resolution

pdb|1NQP|D Chain D, Crystal Structure Of Human Hemoglobin E At 1.73 A Resolution

pdb|1YVQ|B Chain B, The Low Salt (Peg) Crystal Structure Of Co Hemoglobin E (Betae26k) Approaching Physiological Ph (Ph 7.5)

pdb|1YVQ|D Chain D, The Low Salt (Peg) Crystal Structure Of Co Hemoglobin E (Betae26k) Approaching Physiological Ph (Ph 7.5)

pdb|1YVT|B Chain B, The High Salt (Phosphate) Crystal Structure Of Co Hemoglobin E (Glu26lys) At Physiological Ph (Ph 7.35) Length=146 Score = 31.2 bits (66), Expect = 0.26, Method: Composition-based stats. Identities = 11/12 (91%), Positives = 11/12 (91%), Gaps = 0/12 (0%) Query 1 VHLTPVEKSAVT 12 VHLTP EKSAVT Sbjct 1 VHLTPEEKSAVT 12

>pdb|1CMY|B Chain B, The Mutation Beta99 Asp-Tyr Stabilizes Y-A New, Composite

Page 12 of 35NCBI Blast:Patient 1

11/2/2007http://www.ncbi.nlm.nih.gov/BLAST/Blast.cgi?CMD=Get&VIEW_RESULTS=FromRes...

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Quaternary State Of Human Hemoglobin

pdb|1CMY|D Chain D, The Mutation Beta99 Asp-Tyr Stabilizes Y-A New, Composite Quaternary State Of Human Hemoglobin Length=146 Score = 31.2 bits (66), Expect = 0.26, Method: Composition-based stats. Identities = 11/12 (91%), Positives = 11/12 (91%), Gaps = 0/12 (0%) Query 1 VHLTPVEKSAVT 12 VHLTP EKSAVT Sbjct 1 VHLTPEEKSAVT 12

>gb|AAR96398.1| hemoglobin beta [Homo sapiens] Length=147 Score = 31.2 bits (66), Expect = 0.26, Method: Composition-based stats. Identities = 11/12 (91%), Positives = 11/12 (91%), Gaps = 0/12 (0%) Query 1 VHLTPVEKSAVT 12 VHLTP EKSAVT Sbjct 2 VHLTPEEKSAVT 13

>gb|AAK30154.1| beta-globin [Homo sapiens] Length=59 Score = 31.2 bits (66), Expect = 0.26, Method: Composition-based stats. Identities = 11/12 (91%), Positives = 11/12 (91%), Gaps = 0/12 (0%) Query 1 VHLTPVEKSAVT 12 VHLTP EKSAVT Sbjct 2 VHLTPEEKSAVT 13

>pdb|1COH|B Chain B, Structure Of Haemoglobin In The Deoxy Quaternary State With Ligand Bound At The Alpha Haems

pdb|1COH|D Chain D, Structure Of Haemoglobin In The Deoxy Quaternary State With Ligand Bound At The Alpha Haems

pdb|1HCO|B Chain B, The Structure Of Human Carbonmonoxy Haemoglobin At 2.7 Angstroms Resolution

pdb|1HHO|B Chain B, Structure Of Human Oxyhaemoglobin At 2.1 Angstroms Resolution

pdb|1NIH|B Chain B, Structure Of Deoxy-Quaternary Haemoglobin With Liganded Beta Subunits

pdb|1NIH|D Chain D, Structure Of Deoxy-Quaternary Haemoglobin With Liganded Beta Subunits

pdb|1THB|B Chain B, Refinement Of A Partially Oxygenated T State Haemoglobin At 1.5 Angstroms Resolution

pdb|1THB|D Chain D, Refinement Of A Partially Oxygenated T State Haemoglobin At 1.5 Angstroms Resolution

pdb|2HCO|B Chain B, The Structure Of Human Carbonmonoxy Haemoglobin At 2.7 Angstroms Resolution

pdb|4HHB|B Chain B, The Crystal Structure Of Human Deoxyhaemoglobin At 1.74 Angstroms Resolution

pdb|4HHB|D Chain D, The Crystal Structure Of Human Deoxyhaemoglobin At 1.74 Angstroms Resolution

pdb|1BBB|B Chain B, A Third Quaternary Structure Of Human Hemoglobin A At 1.7- Angstroms Resolution

pdb|1BBB|D Chain D, A Third Quaternary Structure Of Human Hemoglobin A At 1.7- Angstroms Resolution

pdb|1BAB|B Chain B, Hemoglobin Thionville: An Alpha-Chain Variant With A Substitution Of A Glutamate For Valine At Na-1 And Having An Acetylated Methionine Nh2 Terminus

Page 13 of 35NCBI Blast:Patient 1

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pdb|1BAB|D Chain D, Hemoglobin Thionville: An Alpha-Chain Variant With A Substitution Of A Glutamate For Valine At Na-1 And Having An Acetylated Methionine Nh2 Terminus

pdb|1HBB|B Chain B, High-Resolution X-Ray Study Of Deoxyhemoglobin Rothschild 37beta Trp-> Arg: A Mutation That Creates An Intersubunit Chloride-Binding Site

pdb|1HBB|D Chain D, High-Resolution X-Ray Study Of Deoxyhemoglobin Rothschild 37beta Trp-> Arg: A Mutation That Creates An Intersubunit Chloride-Binding Site

pdb|1HGA|B Chain B, High Resolution Crystal Structures And Comparisons Of T State Deoxyhaemoglobin And Two Liganded T-State Haemoglobins: T(Alpha-Oxy)haemoglobin And T(Met)haemoglobin

pdb|1HGA|D Chain D, High Resolution Crystal Structures And Comparisons Of T State Deoxyhaemoglobin And Two Liganded T-State Haemoglobins: T(Alpha-Oxy)haemoglobin And T(Met)haemoglobin

pdb|1HGB|B Chain B, High Resolution Crystal Structures And Comparisons Of T State Deoxyhaemoglobin And Two Liganded T-State Haemoglobins: T(Alpha-Oxy)haemoglobin And T(Met)haemoglobin

pdb|1HGB|D Chain D, High Resolution Crystal Structures And Comparisons Of T State Deoxyhaemoglobin And Two Liganded T-State Haemoglobins: T(Alpha-Oxy)haemoglobin And T(Met)haemoglobin

pdb|1HGC|B Chain B, High Resolution Crystal Structures And Comparisons Of T State Deoxyhaemoglobin And Two Liganded T-State Haemoglobins: T(Alpha-Oxy)haemoglobin And T(Met)haemoglobin

pdb|1HGC|D Chain D, High Resolution Crystal Structures And Comparisons Of T State Deoxyhaemoglobin And Two Liganded T-State Haemoglobins: T(Alpha-Oxy)haemoglobin And T(Met)haemoglobin

pdb|1CBL|A Chain A, The 1.9 Angstrom Structure Of Deoxy-Beta4 Hemoglobin: Analysis Of The Partitioning Of Quaternary-Associated And Ligand-Induced Changes In Tertiary Structure

pdb|1CBL|B Chain B, The 1.9 Angstrom Structure Of Deoxy-Beta4 Hemoglobin: Analysis Of The Partitioning Of Quaternary-Associated And Ligand-Induced Changes In Tertiary Structure

pdb|1CBL|C Chain C, The 1.9 Angstrom Structure Of Deoxy-Beta4 Hemoglobin: Analysis Of The Partitioning Of Quaternary-Associated And Ligand-Induced Changes In Tertiary Structure

pdb|1CBL|D Chain D, The 1.9 Angstrom Structure Of Deoxy-Beta4 Hemoglobin: Analysis Of The Partitioning Of Quaternary-Associated And Ligand-Induced Changes In Tertiary Structure

pdb|1CBM|A Chain A, The 1.8 Angstrom Structure Of Carbonmonoxy-Beta4 Hemoglobin: Analysis Of A Homotetramer With The R Quaternary Structure Of Liganded Alpha2beta2 Hemoglobin

pdb|1CBM|B Chain B, The 1.8 Angstrom Structure Of Carbonmonoxy-Beta4 Hemoglobin: Analysis Of A Homotetramer With The R Quaternary Structure Of Liganded Alpha2beta2 Hemoglobin

pdb|1CBM|C Chain C, The 1.8 Angstrom Structure Of Carbonmonoxy-Beta4 Hemoglobin: Analysis Of A Homotetramer With The R Quaternary Structure Of Liganded Alpha2beta2 Hemoglobin

pdb|1CBM|D Chain D, The 1.8 Angstrom Structure Of Carbonmonoxy-Beta4 Hemoglobin: Analysis Of A Homotetramer With The R Quaternary Structure Of Liganded Alpha2beta2 Hemoglobin

pdb|2HBC|B Chain B, High Resolution X-Ray Structures Of Myoglobin-And HemoglobinIsocyanide Complexes

pdb|2HBD|B Chain B, High Resolution X-Ray Structures Of Myoglobin-And HemoglobinIsocyanide Complexes

pdb|2HBE|B Chain B, High Resolution X-Ray Structures Of Myoglobin-And HemoglobinIsocyanide Complexes

pdb|2HBF|B Chain B, High Resolution X-Ray Structures Of Myoglobin-And HemoglobinIsocyanide Complexes

pdb|2HHD|B Chain B, Oxygen Affinity Modulation By The N-Termini Of The Beta- Chains In Human And Bovine Hemoglobin

Page 14 of 35NCBI Blast:Patient 1

11/2/2007http://www.ncbi.nlm.nih.gov/BLAST/Blast.cgi?CMD=Get&VIEW_RESULTS=FromRes...

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pdb|2HHD|D Chain D, Oxygen Affinity Modulation By The N-Termini Of The Beta- Chains In Human And Bovine Hemoglobin

pdb|1CLS|B Chain B, Cross-Linked Human Hemoglobin Deoxy

pdb|1CLS|D Chain D, Cross-Linked Human Hemoglobin Deoxy

pdb|1SDL|B Chain B, Cross-Linked, Carbonmonoxy Hemoglobin A

pdb|1SDL|D Chain D, Cross-Linked, Carbonmonoxy Hemoglobin A

pdb|1SDK|B Chain B, Cross-Linked, Carbonmonoxy Hemoglobin A

pdb|1SDK|D Chain D, Cross-Linked, Carbonmonoxy Hemoglobin A

pdb|1HAB|B Chain B, Crosslinked Haemoglobin

pdb|1HAB|D Chain D, Crosslinked Haemoglobin

pdb|1HAC|B Chain B, Crosslinked Haemoglobin

pdb|1HAC|D Chain D, Crosslinked Haemoglobin

pdb|1RVW|B Chain B, R State Human Hemoglobin [alpha V96w], Carbonmonoxy

pdb|1VWT|B Chain B, T State Human Hemoglobin [alpha V96w], Alpha Aquomet, Beta Deoxy

pdb|1VWT|D Chain D, T State Human Hemoglobin [alpha V96w], Alpha Aquomet, Beta Deoxy

pdb|1A3N|B Chain B, Deoxy Human Hemoglobin

pdb|1A3N|D Chain D, Deoxy Human Hemoglobin

pdb|1A3O|B Chain B, Artificial Mutant (Alpha Y42h) Of Deoxy Hemoglobin

pdb|1A3O|D Chain D, Artificial Mutant (Alpha Y42h) Of Deoxy Hemoglobin

pdb|1AJ9|B Chain B, R-State Human Carbonmonoxyhemoglobin Alpha-A53s

pdb|1BZZ|B Chain B, Hemoglobin (Alpha V1m) Mutant

pdb|1BZZ|D Chain D, Hemoglobin (Alpha V1m) Mutant

pdb|1BZ0|B Chain B, Hemoglobin A (Human, Deoxy, High Salt)

pdb|1BZ0|D Chain D, Hemoglobin A (Human, Deoxy, High Salt)

pdb|1BZ1|B Chain B, Hemoglobin (Alpha + Met) Variant

pdb|1BZ1|D Chain D, Hemoglobin (Alpha + Met) Variant

pdb|1B86|B Chain B, Human Deoxyhaemoglobin-2,3-Diphosphoglycerate Complex

pdb|1B86|D Chain D, Human Deoxyhaemoglobin-2,3-Diphosphoglycerate Complex

pdb|1BIJ|B Chain B, Crosslinked, Deoxy Human Hemoglobin A

pdb|1BIJ|D Chain D, Crosslinked, Deoxy Human Hemoglobin A

pdb|1QSH|B Chain B, Magnesium(Ii)-And Zinc(Ii)-Protoporphyrin Ix's Stabilize The Lowest Oxygen Affinity State Of Human Hemoglobin Even More Strongly Than Deoxyheme

pdb|1QSH|D Chain D, Magnesium(Ii)-And Zinc(Ii)-Protoporphyrin Ix's Stabilize The Lowest Oxygen Affinity State Of Human Hemoglobin Even More Strongly Than Deoxyheme

pdb|1QSI|B Chain B, Magnesium(Ii)-And Zinc(Ii)-Protoporphyrin Ix's Stabilize The Lowest Oxygen Affinity State Of Human Hemoglobin Even More Strongly Than Deoxyheme

pdb|1QSI|D Chain D, Magnesium(Ii)-And Zinc(Ii)-Protoporphyrin Ix's Stabilize The Lowest Oxygen Affinity State Of Human Hemoglobin Even More Strongly Than Deoxyheme

pdb|1DKE|B Chain B, Ni Beta Heme Human Hemoglobin

pdb|1DKE|D Chain D, Ni Beta Heme Human Hemoglobin

pdb|1G9V|B Chain B, High Resolution Crystal Structure Of Deoxy Hemoglobin Complexed With A Potent Allosteric Effector

pdb|1G9V|D Chain D, High Resolution Crystal Structure Of Deoxy Hemoglobin Complexed With A Potent Allosteric Effector

Page 15 of 35NCBI Blast:Patient 1

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pdb|1K0Y|B Chain B, X-Ray Crystallographic Analyses Of Symmetrical Allosteric Effectors Of Hemoglobin. Compounds Designed To Link Primary And Secondary Binding Sites

pdb|1K0Y|D Chain D, X-Ray Crystallographic Analyses Of Symmetrical Allosteric Effectors Of Hemoglobin. Compounds Designed To Link Primary And Secondary Binding Sites

pdb|1IRD|B Chain B, Crystal Structure Of Human Carbonmonoxy-Haemoglobin At 1.25 A Resolution

pdb|1JY7|B Chain B, The Structure Of Human Methemoglobin. The Variation Of A Theme

pdb|1JY7|D Chain D, The Structure Of Human Methemoglobin. The Variation Of A Theme

pdb|1JY7|Q Chain Q, The Structure Of Human Methemoglobin. The Variation Of A Theme

pdb|1JY7|S Chain S, The Structure Of Human Methemoglobin. The Variation Of A Theme

pdb|1JY7|V Chain V, The Structure Of Human Methemoglobin. The Variation Of A Theme

pdb|1JY7|X Chain X, The Structure Of Human Methemoglobin. The Variation Of A Theme

pdb|1LJW|B Chain B, Crystal Structure Of Human Carbonmonoxy Hemoglobin At 2.16 A: A Snapshot Of The Allosteric Transition

pdb|1GZX|B Chain B, Oxy T State Haemoglobin: Oxygen Bound At All Four Haems

pdb|1GZX|D Chain D, Oxy T State Haemoglobin: Oxygen Bound At All Four Haems

pdb|1MKO|B Chain B, A Fourth Quaternary Structure Of Human Hemoglobin A At 2.18 A Resolution

pdb|1MKO|D Chain D, A Fourth Quaternary Structure Of Human Hemoglobin A At 2.18 A Resolution

pdb|1LFL|B Chain B, Deoxy Hemoglobin (90% Relative Humidity)

pdb|1LFL|D Chain D, Deoxy Hemoglobin (90% Relative Humidity)

pdb|1LFL|Q Chain Q, Deoxy Hemoglobin (90% Relative Humidity)

pdb|1LFL|S Chain S, Deoxy Hemoglobin (90% Relative Humidity)

pdb|1LFQ|B Chain B, Oxy Hemoglobin (93% Relative Humidity)

pdb|1LFT|B Chain B, Oxy Hemoglobin (90% Relative Humidity)

pdb|1LFV|B Chain B, Oxy Hemoglobin (88% Relative Humidity)

pdb|1LFY|B Chain B, Oxy Hemoglobin (84% Relative Humidity)

pdb|1LFZ|B Chain B, Oxy Hemoglobin (25% Methanol)

pdb|1KD2|B Chain B, Crystal Structure Of Human Deoxyhemoglobin In Absence Of Any Anions

pdb|1KD2|D Chain D, Crystal Structure Of Human Deoxyhemoglobin In Absence Of Any Anions

pdb|1UIW|B Chain B, Crystal Structures Of Unliganded And Half-Liganded Human Hemoglobin Derivatives Cross-Linked Between Lys 82beta1 And Lys 82beta2

pdb|1UIW|D Chain D, Crystal Structures Of Unliganded And Half-Liganded Human Hemoglobin Derivatives Cross-Linked Between Lys 82beta1 And Lys 82beta2

pdb|1UIW|F Chain F, Crystal Structures Of Unliganded And Half-Liganded Human Hemoglobin Derivatives Cross-Linked Between Lys 82beta1 And Lys 82beta2

pdb|1UIW|H Chain H, Crystal Structures Of Unliganded And Half-Liganded Human Hemoglobin Derivatives Cross-Linked Between Lys 82beta1 And Lys 82beta2

pdb|1J3Y|B Chain B, Direct Observation Of Photolysis-Induced Tertiary Structural Changes In Human Hemoglobin; Crystal Structure Of Alpha(Fe)-Beta(Ni)

Page 16 of 35NCBI Blast:Patient 1

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Hemoglobin (Laser Photolysed)

pdb|1J3Y|D Chain D, Direct Observation Of Photolysis-Induced Tertiary Structural Changes In Human Hemoglobin; Crystal Structure Of Alpha(Fe)-Beta(Ni) Hemoglobin (Laser Photolysed)

pdb|1J3Y|F Chain F, Direct Observation Of Photolysis-Induced Tertiary Structural Changes In Human Hemoglobin; Crystal Structure Of Alpha(Fe)-Beta(Ni) Hemoglobin (Laser Photolysed)

pdb|1J3Y|H Chain H, Direct Observation Of Photolysis-Induced Tertiary Structural Changes In Human Hemoglobin; Crystal Structure Of Alpha(Fe)-Beta(Ni) Hemoglobin (Laser Photolysed)

pdb|1J3Z|B Chain B, Direct Observation Of Photolysis-Induced Tertiary Structural Changes In Human Haemoglobin; Crystal Structure Of Alpha(Fe-Co)-Beta(Ni) Hemoglobin (Laser Unphotolysed)

pdb|1J3Z|D Chain D, Direct Observation Of Photolysis-Induced Tertiary Structural Changes In Human Haemoglobin; Crystal Structure Of Alpha(Fe-Co)-Beta(Ni) Hemoglobin (Laser Unphotolysed)

pdb|1J3Z|F Chain F, Direct Observation Of Photolysis-Induced Tertiary Structural Changes In Human Haemoglobin; Crystal Structure Of Alpha(Fe-Co)-Beta(Ni) Hemoglobin (Laser Unphotolysed)

pdb|1J3Z|H Chain H, Direct Observation Of Photolysis-Induced Tertiary Structural Changes In Human Haemoglobin; Crystal Structure Of Alpha(Fe-Co)-Beta(Ni) Hemoglobin (Laser Unphotolysed)

pdb|1J40|B Chain B, Direct Observation Of Photolysis-Induced Tertiary Structural Changes In Human Haemoglobin; Crystal Structure Of Alpha(Ni)-Beta(Fe-Co) Hemoglobin (Laser Unphotolysed)

pdb|1J40|D Chain D, Direct Observation Of Photolysis-Induced Tertiary Structural Changes In Human Haemoglobin; Crystal Structure Of Alpha(Ni)-Beta(Fe-Co) Hemoglobin (Laser Unphotolysed)

pdb|1J40|F Chain F, Direct Observation Of Photolysis-Induced Tertiary Structural Changes In Human Haemoglobin; Crystal Structure Of Alpha(Ni)-Beta(Fe-Co) Hemoglobin (Laser Unphotolysed)

pdb|1J40|H Chain H, Direct Observation Of Photolysis-Induced Tertiary Structural Changes In Human Haemoglobin; Crystal Structure Of Alpha(Ni)-Beta(Fe-Co) Hemoglobin (Laser Unphotolysed)

pdb|1J41|B Chain B, Direct Observation Of Photolysis-Induced Tertiary Structural Changes In Human Haemoglobin; Crystal Structure Of Alpha(Ni)-Beta(Fe) Hemoglobin (Laser Photolysed)

pdb|1J41|D Chain D, Direct Observation Of Photolysis-Induced Tertiary Structural Changes In Human Haemoglobin; Crystal Structure Of Alpha(Ni)-Beta(Fe) Hemoglobin (Laser Photolysed)

pdb|1J41|F Chain F, Direct Observation Of Photolysis-Induced Tertiary Structural Changes In Human Haemoglobin; Crystal Structure Of Alpha(Ni)-Beta(Fe) Hemoglobin (Laser Photolysed)

pdb|1J41|H Chain H, Direct Observation Of Photolysis-Induced Tertiary Structural Changes In Human Haemoglobin; Crystal Structure Of Alpha(Ni)-Beta(Fe) Hemoglobin (Laser Photolysed)

pdb|1FN3|B Chain B, Crystal Structure Of Nickel Reconstituted Hemoglobin-A Case For Permanent, T-State Hemoglobin

pdb|1FN3|D Chain D, Crystal Structure Of Nickel Reconstituted Hemoglobin-A Case For Permanent, T-State Hemoglobin

pdb|1QXD|B Chain B, Structural Basis For The Potent Antisickling Effect Of A Novel Class Of 5-Membered Heterocyclic Aldehydic Compounds

pdb|1QXD|D Chain D, Structural Basis For The Potent Antisickling Effect Of A Novel Class Of 5-Membered Heterocyclic Aldehydic Compounds

pdb|1QXE|B Chain B, Structural Basis For The Potent Antisickling Effect Of A Novel Class Of 5-Membered Heterocyclic Aldehydic Compounds

pdb|1QXE|D Chain D, Structural Basis For The Potent Antisickling Effect Of A Novel Class Of 5-Membered Heterocyclic Aldehydic Compounds

pdb|1R1X|B Chain B, Crystal Structure Of Oxy-Human Hemoglobin Bassett At 2.15 Angstrom

Page 17 of 35NCBI Blast:Patient 1

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pdb|1R1Y|B Chain B, Crystal Structure Of Deoxy-Human Hemoglobin Bassett At 1.8 Angstrom

pdb|1R1Y|D Chain D, Crystal Structure Of Deoxy-Human Hemoglobin Bassett At 1.8 Angstrom

pdb|1RPS|B Chain B, Crystallographic Analysis Of The Interaction Of Nitric Oxide With Quaternary-T Human Hemoglobin. Hemoglobin Exposed To No Under Anerobic Conditions

pdb|1RPS|D Chain D, Crystallographic Analysis Of The Interaction Of Nitric Oxide With Quaternary-T Human Hemoglobin. Hemoglobin Exposed To No Under Anerobic Conditions

pdb|1RQ3|B Chain B, Crystallographic Analysis Of The Interaction Of Nitric Oxide With Quaternary-T Human Deoxyhemoglobin, Deoxyhemoglobin

pdb|1RQ3|D Chain D, Crystallographic Analysis Of The Interaction Of Nitric Oxide With Quaternary-T Human Deoxyhemoglobin, Deoxyhemoglobin

pdb|1XYE|B Chain B, T-To-Thigh Transitions In Human Hemoglobin: Alpha Y42a Deoxy Low Salt

pdb|1XYE|D Chain D, T-To-Thigh Transitions In Human Hemoglobin: Alpha Y42a Deoxy Low Salt

pdb|1XZ2|B Chain B, Wild-Type Hemoglobin Deoxy No-Salt

pdb|1XZ2|D Chain D, Wild-Type Hemoglobin Deoxy No-Salt

pdb|1XZ4|B Chain B, Intersubunit Interactions Associated With Tyr42alpha Stabilize The Quaternary-T Tetramer But Are Not Major Quaternary Constraints In Deoxyhemoglobin: Alphay42a Deoxyhemoglobin No-Salt

pdb|1XZ4|D Chain D, Intersubunit Interactions Associated With Tyr42alpha Stabilize The Quaternary-T Tetramer But Are Not Major Quaternary Constraints In Deoxyhemoglobin: Alphay42a Deoxyhemoglobin No-Salt

pdb|1XZ7|B Chain B, T-To-Thigh Quaternary Transitions In Human Hemoglobin: Alphar92a Deoxy Low-Salt

pdb|1XZ7|D Chain D, T-To-Thigh Quaternary Transitions In Human Hemoglobin: Alphar92a Deoxy Low-Salt

pdb|1Y09|B Chain B, T-To-T(High) Quaternary Transitions In Human Hemoglobin: Alphan97a Deoxy Low-Salt

pdb|1Y09|D Chain D, T-To-T(High) Quaternary Transitions In Human Hemoglobin: Alphan97a Deoxy Low-Salt

pdb|1Y0D|B Chain B, T-To-Thigh Quaternary Transitions In Human Hemoglobin: Desarg141alpha Deoxy Low-Salt

pdb|1Y0D|D Chain D, T-To-Thigh Quaternary Transitions In Human Hemoglobin: Desarg141alpha Deoxy Low-Salt

pdb|1YDZ|B Chain B, T-To-T(High) Quaternary Transitions In Human Hemoglobin: Alphay140f Oxy (2mm Ihp, 20% Peg) (1 Test Set)

pdb|1YDZ|D Chain D, T-To-T(High) Quaternary Transitions In Human Hemoglobin: Alphay140f Oxy (2mm Ihp, 20% Peg) (1 Test Set)

pdb|1YH9|B Chain B, T-To-T(High) Quaternary Transitions In Human Hemoglobin: Hba Oxy (2mm Ihp, 20% Peg) (10 Test Sets)

pdb|1YH9|D Chain D, T-To-T(High) Quaternary Transitions In Human Hemoglobin: Hba Oxy (2mm Ihp, 20% Peg) (10 Test Sets)

pdb|1YHE|B Chain B, T-To-T(High) Quaternary Transitions In Human Hemoglobin: Hba Oxy (5.0mm Ihp, 20% Peg) (10 Test Sets)

pdb|1YHE|D Chain D, T-To-T(High) Quaternary Transitions In Human Hemoglobin: Hba Oxy (5.0mm Ihp, 20% Peg) (10 Test Sets)

pdb|1YHR|B Chain B, T-To-T(High) Quaternary Transitions In Human Hemoglobin: Hba Oxy (10.0mm Ihp, 20% Peg) (10 Test Sets)

pdb|1YHR|D Chain D, T-To-T(High) Quaternary Transitions In Human Hemoglobin: Hba Oxy (10.0mm Ihp, 20% Peg) (10 Test Sets)

pdb|1Y8W|B Chain B, T-To-T(High) Quaternary Transitions In Human Hemoglobin:

Page 18 of 35NCBI Blast:Patient 1

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Alphar92a Oxy (2mm Ihp, 20% Peg) (10 Test Sets)

pdb|1Y8W|D Chain D, T-To-T(High) Quaternary Transitions In Human Hemoglobin: Alphar92a Oxy (2mm Ihp, 20% Peg) (10 Test Sets)

pdb|1XXT|B Chain B, The T-To-T High Transitions In Human Hemoglobin: Wild-Type Deoxy Hb A (Low Salt, One Test Set)

pdb|1XXT|D Chain D, The T-To-T High Transitions In Human Hemoglobin: Wild-Type Deoxy Hb A (Low Salt, One Test Set)

pdb|1XY0|B Chain B, T-To-Thigh Transitions In Human Hemoglobin: Alphak40g Deoxy Low-Salt

pdb|1XY0|D Chain D, T-To-Thigh Transitions In Human Hemoglobin: Alphak40g Deoxy Low-Salt

pdb|1XZ5|B Chain B, T-To-Thigh Quaternary Transitions In Human Hemoglobin: Alphal91a Deoxy Low-Salt

pdb|1XZ5|D Chain D, T-To-Thigh Quaternary Transitions In Human Hemoglobin: Alphal91a Deoxy Low-Salt

pdb|1XZU|B Chain B, T-To-Thigh Quaternary Transitions In Human Hemoglobin: Alphad94g Deoxy Low-Salt

pdb|1XZU|D Chain D, T-To-Thigh Quaternary Transitions In Human Hemoglobin: Alphad94g Deoxy Low-Salt

pdb|1XZV|B Chain B, T-To-Thigh Quaternary Transitions In Human Hemoglobin: Alphap95a Deoxy Low-Salt

pdb|1XZV|D Chain D, T-To-Thigh Quaternary Transitions In Human Hemoglobin: Alphap95a Deoxy Low-Salt

pdb|1Y0A|B Chain B, T-To-Thigh Quaternary Transitions In Human Hemoglobin: Alphay140a Deoxy Low-Salt

pdb|1Y0A|D Chain D, T-To-Thigh Quaternary Transitions In Human Hemoglobin: Alphay140a Deoxy Low-Salt

pdb|1Y0C|B Chain B, T-To-Thigh Quaternary Transitions In Human Hemoglobin: Alphay140f Deoxy Low-Salt

pdb|1Y0C|D Chain D, T-To-Thigh Quaternary Transitions In Human Hemoglobin: Alphay140f Deoxy Low-Salt

pdb|1YZI|B Chain B, A Novel Quaternary Structure Of Human Carbonmonoxy Hemoglobin

pdb|2D5Z|B Chain B, Crystal Structure Of T-State Human Hemoglobin Complexed With Three L35 Molecules

pdb|2D5Z|D Chain D, Crystal Structure Of T-State Human Hemoglobin Complexed With Three L35 Molecules

pdb|2D60|B Chain B, Crystal Structure Of Deoxy Human Hemoglobin Complexed With Two L35 Molecules

pdb|2D60|D Chain D, Crystal Structure Of Deoxy Human Hemoglobin Complexed With Two L35 Molecules

pdb|2DN1|B Chain B, 1.25a Resolution Crystal Structure Of Human Hemoglobin In The Oxy Form

pdb|2DN2|B Chain B, 1.25a Resolution Crystal Structure Of Human Hemoglobin In The Deoxy Form

pdb|2DN2|D Chain D, 1.25a Resolution Crystal Structure Of Human Hemoglobin In The Deoxy Form

pdb|2DN3|B Chain B, 1.25a Resolution Crystal Structure Of Human Hemoglobin In The Carbonmonoxy Form

pdb|2H35|B Chain B, Solution Structure Of Human Normal Adult Hemoglobin

pdb|2H35|D Chain D, Solution Structure Of Human Normal Adult Hemoglobin Length=146 Score = 31.2 bits (66), Expect = 0.26, Method: Composition-based stats. Identities = 11/12 (91%), Positives = 11/12 (91%), Gaps = 0/12 (0%) Query 1 VHLTPVEKSAVT 12 VHLTP EKSAVT Sbjct 1 VHLTPEEKSAVT 12

Page 19 of 35NCBI Blast:Patient 1

11/2/2007http://www.ncbi.nlm.nih.gov/BLAST/Blast.cgi?CMD=Get&VIEW_RESULTS=FromRes...

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>gb|AAD19696.1| hemoglobin beta chain [Homo sapiens] Length=147 Score = 31.2 bits (66), Expect = 0.27, Method: Composition-based stats. Identities = 11/12 (91%), Positives = 11/12 (91%), Gaps = 0/12 (0%) Query 1 VHLTPVEKSAVT 12 VHLTP EKSAVT Sbjct 2 VHLTPEEKSAVT 13

>pdb|1GBV|B Chain B, (Alpha-Oxy, Beta-(C112g)deoxy) T-State Human Hemoglobin

pdb|1GBV|D Chain D, (Alpha-Oxy, Beta-(C112g)deoxy) T-State Human Hemoglobin Length=146 Score = 31.2 bits (66), Expect = 0.27, Method: Composition-based stats. Identities = 11/12 (91%), Positives = 11/12 (91%), Gaps = 0/12 (0%) Query 1 VHLTPVEKSAVT 12 VHLTP EKSAVT Sbjct 1 VHLTPEEKSAVT 12

>pdb|1HBA|B Chain B, High-Resolution X-Ray Study Of Deoxyhemoglobin Rothschild 37beta Trp-> Arg: A Mutation That Creates An Intersubunit Chloride-Binding Site

pdb|1HBA|D Chain D, High-Resolution X-Ray Study Of Deoxyhemoglobin Rothschild 37beta Trp-> Arg: A Mutation That Creates An Intersubunit Chloride-Binding Site Length=146 Score = 31.2 bits (66), Expect = 0.28, Method: Composition-based stats. Identities = 11/12 (91%), Positives = 11/12 (91%), Gaps = 0/12 (0%) Query 1 VHLTPVEKSAVT 12 VHLTP EKSAVT Sbjct 1 VHLTPEEKSAVT 12 >gb|ABB82620.1| mutant beta-globin [Homo sapiens] Length=22 Score = 31.2 bits (66), Expect = 0.29, Method: Composition-based stats. Identities = 11/12 (91%), Positives = 11/12 (91%), Gaps = 0/12 (0%) Query 1 VHLTPVEKSAVT 12 VHLTP EKSAVT Sbjct 2 VHLTPEEKSAVT 13

>pdb|1BUW|B Chain B, Crystal Structure Of S-Nitroso-Nitrosyl Human Hemoglobin A

pdb|1BUW|D Chain D, Crystal Structure Of S-Nitroso-Nitrosyl Human Hemoglobin A

pdb|1RQ4|B Chain B, Crystallographic Analysis Of The Interaction Of Nitric Oxide With Quaternary-T Human Hemoglobin, Hemoglobin Exposed To No Under Aerobic Conditions

pdb|1RQ4|D Chain D, Crystallographic Analysis Of The Interaction Of Nitric Oxide With Quaternary-T Human Hemoglobin, Hemoglobin Exposed To No Under Aerobic Conditions Length=146 Score = 31.2 bits (66), Expect = 0.29, Method: Composition-based stats. Identities = 11/12 (91%), Positives = 11/12 (91%), Gaps = 0/12 (0%) Query 1 VHLTPVEKSAVT 12 VHLTP EKSAVT

Page 20 of 35NCBI Blast:Patient 1

11/2/2007http://www.ncbi.nlm.nih.gov/BLAST/Blast.cgi?CMD=Get&VIEW_RESULTS=FromRes...

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Sbjct 1 VHLTPEEKSAVT 12

>pdb|1GBU|B Chain B, Deoxy (Beta-(C93a,C112g)) Human Hemoglobin

pdb|1GBU|D Chain D, Deoxy (Beta-(C93a,C112g)) Human Hemoglobin Length=146 Score = 31.2 bits (66), Expect = 0.29, Method: Composition-based stats. Identities = 11/12 (91%), Positives = 11/12 (91%), Gaps = 0/12 (0%) Query 1 VHLTPVEKSAVT 12 VHLTP EKSAVT Sbjct 1 VHLTPEEKSAVT 12 >prf||610523A hemoglobin beta Length=146 Score = 31.2 bits (66), Expect = 0.30, Method: Composition-based stats. Identities = 11/12 (91%), Positives = 11/12 (91%), Gaps = 0/12 (0%) Query 1 VHLTPVEKSAVT 12 VHLTP EKSAVT Sbjct 1 VHLTPEEKSAVT 12

>gb|AAA53153.1| beta-hemoglobin

gb|AAF08258.1| beta-globin [Homo sapiens]

gb|AAF08260.1| beta-globin [Homo sapiens]

gb|AAF08261.1| beta-globin [Homo sapiens]

gb|AAF08262.1| beta-globin [Homo sapiens]

gb|AAF08263.1| beta-globin [Homo sapiens]

gb|AAF08264.1| beta-globin [Homo sapiens]

gb|AAF08265.1| beta-globin [Homo sapiens]

gb|AAF08267.1| beta-globin [Homo sapiens]

gb|AAF08268.1| beta-globin [Homo sapiens]

gb|AAF08269.1| beta-globin [Homo sapiens]

gb|AAF08270.1| beta-globin [Homo sapiens]

gb|AAF08271.1| beta-globin [Homo sapiens]

gb|AAF08272.1| beta-globin [Homo sapiens] Length=61 Score = 30.8 bits (65), Expect = 0.34, Method: Composition-based stats. Identities = 11/12 (91%), Positives = 11/12 (91%), Gaps = 0/12 (0%) Query 1 VHLTPVEKSAVT 12 VHLTP EKSAVT Sbjct 2 VHLTPEEKSAVT 13

>pdb|1CH4|A Chain A, Module-Substituted Chimera Hemoglobin Beta-Alpha (F133v)

pdb|1CH4|B Chain B, Module-Substituted Chimera Hemoglobin Beta-Alpha (F133v)

pdb|1CH4|C Chain C, Module-Substituted Chimera Hemoglobin Beta-Alpha (F133v)

pdb|1CH4|D Chain D, Module-Substituted Chimera Hemoglobin Beta-Alpha (F133v) Length=146 Score = 30.8 bits (65), Expect = 0.41, Method: Composition-based stats. Identities = 11/12 (91%), Positives = 11/12 (91%), Gaps = 0/12 (0%) Query 1 VHLTPVEKSAVT 12 VHLTP EKSAVT Sbjct 1 VHLTPEEKSAVT 12

Page 21 of 35NCBI Blast:Patient 1

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>gb|AAZ39780.1| beta globin [Homo sapiens]

gb|AAZ39781.1| beta globin [Homo sapiens]

gb|AAZ39782.1| beta globin [Homo sapiens]

gb|AAZ39783.1| beta globin [Homo sapiens]

gb|AAZ39784.1| beta globin [Homo sapiens]

gb|AAZ39785.1| beta globin [Homo sapiens]

gb|AAZ39786.1| beta globin [Homo sapiens]

gb|AAZ39787.1| beta globin [Homo sapiens]

gb|AAZ39788.1| beta globin [Homo sapiens]

gb|AAZ39789.1| beta globin [Homo sapiens]

gb|AAZ39790.1| beta globin [Homo sapiens]

gb|AAZ39791.1| beta globin [Homo sapiens]

gb|AAZ39792.1| beta globin [Homo sapiens]

gb|AAZ39793.1| beta globin [Homo sapiens]

gb|AAZ39794.1| beta globin [Homo sapiens]

gb|AAZ39795.1| beta globin [Homo sapiens]

gb|AAZ39796.1| beta globin [Homo sapiens]

gb|AAZ39797.1| beta globin [Homo sapiens]

gb|AAZ39798.1| beta globin [Homo sapiens]

gb|AAZ39799.1| beta globin [Homo sapiens]

gb|AAZ39800.1| beta globin [Homo sapiens] Length=147 Score = 30.3 bits (64), Expect = 0.49, Method: Composition-based stats. Identities = 11/12 (91%), Positives = 11/12 (91%), Gaps = 0/12 (0%) Query 1 VHLTPVEKSAVT 12 VHLTP EKSAVT Sbjct 2 VHLTPKEKSAVT 13

>pdb|1K1K|B Chain B, Structure Of Mutant Human Carbonmonoxyhemoglobin C (Beta E6k) At 2.0 Angstrom Resolution In Phosphate Buffer.

pdb|1M9P|B Chain B, Crystalline Human Carbonmonoxy Hemoglobin C Exhibits The R2 Quaternary State At Neutral Ph In The Presence Of Polyethylene Glycol: The 2.1 Angstrom Resolution Crystal Structure

pdb|1M9P|D Chain D, Crystalline Human Carbonmonoxy Hemoglobin C Exhibits The R2 Quaternary State At Neutral Ph In The Presence Of Polyethylene Glycol: The 2.1 Angstrom Resolution Crystal Structure

pdb|1YFF|B Chain B, Structure Of Human Carbonmonoxyhemoglobin C (Beta E6k): Two Quaternary States (R2 And R3) In One Crystal

pdb|1YFF|D Chain D, Structure Of Human Carbonmonoxyhemoglobin C (Beta E6k): Two Quaternary States (R2 And R3) In One Crystal

pdb|1YFF|F Chain F, Structure Of Human Carbonmonoxyhemoglobin C (Beta E6k): Two Quaternary States (R2 And R3) In One Crystal

pdb|1YFF|H Chain H, Structure Of Human Carbonmonoxyhemoglobin C (Beta E6k): Two Quaternary States (R2 And R3) In One Crystal Length=146 Score = 30.3 bits (64), Expect = 0.51, Method: Composition-based stats. Identities = 11/12 (91%), Positives = 11/12 (91%), Gaps = 0/12 (0%) Query 1 VHLTPVEKSAVT 12 VHLTP EKSAVT Sbjct 1 VHLTPKEKSAVT 12

Page 22 of 35NCBI Blast:Patient 1

11/2/2007http://www.ncbi.nlm.nih.gov/BLAST/Blast.cgi?CMD=Get&VIEW_RESULTS=FromRes...

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>gb|AAG28779.1|AF305829_1 mutant beta-globin [Homo sapiens] Length=31 Score = 29.5 bits (62), Expect = 0.86, Method: Composition-based stats. Identities = 11/12 (91%), Positives = 11/12 (91%), Gaps = 0/12 (0%) Query 1 VHLTPVEKSAVT 12 VHLTP EKSAVT Sbjct 2 VHLTPEEKSAVT 13

>gb|AAY15222.1| beta globin [Homo sapiens] Length=105 Score = 29.5 bits (62), Expect = 0.89, Method: Composition-based stats. Identities = 10/11 (90%), Positives = 10/11 (90%), Gaps = 0/11 (0%) Query 2 HLTPVEKSAVT 12 HLTP EKSAVT Sbjct 3 HLTPEEKSAVT 13

>gb|AAP44006.1| beta globin variant [Homo sapiens] Length=31 Score = 29.5 bits (62), Expect = 0.91, Method: Composition-based stats. Identities = 11/12 (91%), Positives = 11/12 (91%), Gaps = 0/12 (0%) Query 1 VHLTPVEKSAVT 12 VHLTP EKSAVT Sbjct 2 VHLTPEEKSAVT 13

>gb|AAG46182.1| mutant beta-globin [Homo sapiens] Length=31 Score = 29.5 bits (62), Expect = 0.92, Method: Composition-based stats. Identities = 11/12 (91%), Positives = 11/12 (91%), Gaps = 0/12 (0%) Query 1 VHLTPVEKSAVT 12 VHLTP EKSAVT Sbjct 2 VHLTPEEKSAVT 13

>gb|AAA16335.1| beta-globin thalassemia [Homo sapiens] gb|AAA88056.1| beta-globin gb|AAA88068.1| beta-globin gb|AAA99223.1| beta-globin gb|AAA88053.1| beta-globin gb|AAA88062.1| beta-globin gb|AAA88060.1| beta-globin gb|AAA88058.1| beta-globin gb|AAA88064.1| beta-globin gb|AAA88066.1| beta-globin Length=36 Score = 29.5 bits (62), Expect = 0.94, Method: Composition-based stats. Identities = 11/12 (91%), Positives = 11/12 (91%), Gaps = 0/12 (0%) Query 1 VHLTPVEKSAVT 12 VHLTP EKSAVT Sbjct 2 VHLTPEEKSAVT 13

>pdb|1O1K|B Chain B, Deoxy Hemoglobin (A,C:v1m; B,D:v1m,V67w)

pdb|1O1K|D Chain D, Deoxy Hemoglobin (A,C:v1m; B,D:v1m,V67w)

pdb|1O1M|B Chain B, Deoxy Hemoglobin (A-Glyglygly-C:v1m,L29f,H58q B,D:v1m,V67w)

Page 23 of 35NCBI Blast:Patient 1

11/2/2007http://www.ncbi.nlm.nih.gov/BLAST/Blast.cgi?CMD=Get&VIEW_RESULTS=FromRes...

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pdb|1O1M|D Chain D, Deoxy Hemoglobin (A-Glyglygly-C:v1m,L29f,H58q B,D:v1m,V67w)Length=146 Score = 29.1 bits (61), Expect = 1.2, Method: Composition-based stats. Identities = 10/11 (90%), Positives = 10/11 (90%), Gaps = 0/11 (0%) Query 2 HLTPVEKSAVT 12 HLTP EKSAVT Sbjct 2 HLTPEEKSAVT 12

>pdb|1Y2Z|B Chain B, T-To-T(High) Quaternary Transitions In Human Hemoglobin: Betav34g Deoxy Low-Salt (1 Test Set)

pdb|1Y2Z|D Chain D, T-To-T(High) Quaternary Transitions In Human Hemoglobin: Betav34g Deoxy Low-Salt (1 Test Set) Length=146 Score = 29.1 bits (61), Expect = 1.3, Method: Composition-based stats. Identities = 10/11 (90%), Positives = 10/11 (90%), Gaps = 0/11 (0%) Query 2 HLTPVEKSAVT 12 HLTP EKSAVT Sbjct 2 HLTPEEKSAVT 12

>pdb|1QI8|B Chain B, Deoxygenated Structure Of A Distal Pocket Hemoglobin Mutant

pdb|1QI8|D Chain D, Deoxygenated Structure Of A Distal Pocket Hemoglobin Mutant

pdb|1J7W|B Chain B, Crystal Structure Of Deoxy Hbbetayq, A Site Directed Mutant Of Hba

pdb|1J7W|D Chain D, Crystal Structure Of Deoxy Hbbetayq, A Site Directed Mutant Of Hba

pdb|1J7Y|B Chain B, Crystal Structure Of Partially Ligated Mutant Of Hba

pdb|1J7Y|D Chain D, Crystal Structure Of Partially Ligated Mutant Of Hba Length=146 Score = 29.1 bits (61), Expect = 1.3, Method: Composition-based stats. Identities = 10/11 (90%), Positives = 10/11 (90%), Gaps = 0/11 (0%) Query 2 HLTPVEKSAVT 12 HLTP EKSAVT Sbjct 2 HLTPEEKSAVT 12

>gb|AAP74754.1| beta-globin [Homo sapiens]

emb|CAI40296.1| hemoglobin beta chain [Homo sapiens] Length=30 Score = 29.1 bits (61), Expect = 1.3, Method: Composition-based stats. Identities = 11/12 (91%), Positives = 11/12 (91%), Gaps = 0/12 (0%) Query 1 VHLTPVEKSAVT 12 VHLTP EKSAVT Sbjct 2 VHLTPEEKSAVT 13

>pdb|1O1O|B Chain B, Deoxy Hemoglobin (A,C:v1m,V62l; B,D:v1m,V67l)

pdb|1O1O|D Chain D, Deoxy Hemoglobin (A,C:v1m,V62l; B,D:v1m,V67l) Length=146 Score = 29.1 bits (61), Expect = 1.3, Method: Composition-based stats. Identities = 10/11 (90%), Positives = 10/11 (90%), Gaps = 0/11 (0%) Query 2 HLTPVEKSAVT 12 HLTP EKSAVT Sbjct 2 HLTPEEKSAVT 12

Page 24 of 35NCBI Blast:Patient 1

11/2/2007http://www.ncbi.nlm.nih.gov/BLAST/Blast.cgi?CMD=Get&VIEW_RESULTS=FromRes...

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>pdb|1YE0|B Chain B, T-To-T(High) Quaternary Transitions In Human Hemoglobin: Betav33a Oxy (2mm Ihp, 20% Peg) (1 Test Set)

pdb|1YE0|D Chain D, T-To-T(High) Quaternary Transitions In Human Hemoglobin: Betav33a Oxy (2mm Ihp, 20% Peg) (1 Test Set)

pdb|1Y22|B Chain B, T-To-T(High) Quaternary Transitions In Human Hemoglobin: Betav33a Deoxy Low-Salt (1 Test Set)

pdb|1Y22|D Chain D, T-To-T(High) Quaternary Transitions In Human Hemoglobin: Betav33a Deoxy Low-Salt (1 Test Set) Length=146 Score = 29.1 bits (61), Expect = 1.3, Method: Composition-based stats. Identities = 10/11 (90%), Positives = 10/11 (90%), Gaps = 0/11 (0%) Query 2 HLTPVEKSAVT 12 HLTP EKSAVT Sbjct 2 HLTPEEKSAVT 12

>pdb|1Y7D|B Chain B, T-To-T(High) Quaternary Transitions In Human Hemoglobin: Betap100g Deoxy Low-Salt (1 Test Set)

pdb|1Y7D|D Chain D, T-To-T(High) Quaternary Transitions In Human Hemoglobin: Betap100g Deoxy Low-Salt (1 Test Set) Length=146 Score = 29.1 bits (61), Expect = 1.4, Method: Composition-based stats. Identities = 10/11 (90%), Positives = 10/11 (90%), Gaps = 0/11 (0%) Query 2 HLTPVEKSAVT 12 HLTP EKSAVT Sbjct 2 HLTPEEKSAVT 12

>pdb|1YGF|B Chain B, T-To-T(High) Quaternary Transitions In Human Hemoglobin: Betah97a Oxy (2mm Ihp, 20% Peg) (1 Test Set)

pdb|1YGF|D Chain D, T-To-T(High) Quaternary Transitions In Human Hemoglobin: Betah97a Oxy (2mm Ihp, 20% Peg) (1 Test Set)

pdb|1Y5J|B Chain B, T-To-T(High) Quaternary Transitions In Human Hemoglobin: Betah97a Deoxy Low-Salt (1 Test Set)

pdb|1Y5J|D Chain D, T-To-T(High) Quaternary Transitions In Human Hemoglobin: Betah97a Deoxy Low-Salt (1 Test Set) Length=146 Score = 28.6 bits (60), Expect = 1.4, Method: Composition-based stats. Identities = 10/11 (90%), Positives = 10/11 (90%), Gaps = 0/11 (0%) Query 2 HLTPVEKSAVT 12 HLTP EKSAVT Sbjct 2 HLTPEEKSAVT 12

>pdb|1O1I|B Chain B, Cyanomet Hemoglobin (A-Gly-C:v1m,L29f,H58q; B,D:v1m,L106w)

pdb|1O1J|B Chain B, Deoxy Hemoglobin (A-Gly-C:v1m,L29f,H58q; B,D:v1m,L106w)

pdb|1O1J|D Chain D, Deoxy Hemoglobin (A-Gly-C:v1m,L29f,H58q; B,D:v1m,L106w) Length=146 Score = 28.6 bits (60), Expect = 1.4, Method: Composition-based stats. Identities = 10/11 (90%), Positives = 10/11 (90%), Gaps = 0/11 (0%) Query 2 HLTPVEKSAVT 12 HLTP EKSAVT Sbjct 2 HLTPEEKSAVT 12

>pdb|1YIH|B Chain B, T-To-T(High) Quaternary Transitions In Human Hemoglobin:

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Betap100a Oxy (2.2mm Ihp, 20% Peg) (1 Test Set)

pdb|1YIH|D Chain D, T-To-T(High) Quaternary Transitions In Human Hemoglobin: Betap100a Oxy (2.2mm Ihp, 20% Peg) (1 Test Set)

pdb|1Y7C|B Chain B, T-To-T(High) Quaternary Transitions In Human Hemoglobin: Betap100a Deoxy Low-Salt (1 Test Set)

pdb|1Y7C|D Chain D, T-To-T(High) Quaternary Transitions In Human Hemoglobin: Betap100a Deoxy Low-Salt (1 Test Set) Length=146 Score = 28.6 bits (60), Expect = 1.5, Method: Composition-based stats. Identities = 10/11 (90%), Positives = 10/11 (90%), Gaps = 0/11 (0%) Query 2 HLTPVEKSAVT 12 HLTP EKSAVT Sbjct 2 HLTPEEKSAVT 12

>pdb|1YEN|B Chain B, T-To-T(High) Quaternary Transitions In Human Hemoglobin: Betap36a Oxy (2mm Ihp, 20% Peg) (10 Test Sets)

pdb|1YEN|D Chain D, T-To-T(High) Quaternary Transitions In Human Hemoglobin: Betap36a Oxy (2mm Ihp, 20% Peg) (10 Test Sets)

pdb|1Y45|B Chain B, T-To-T(High) Quaternary Transitions In Human Hemoglobin: Betap36a Deoxy Low-Salt (10 Test Sets)

pdb|1Y45|D Chain D, T-To-T(High) Quaternary Transitions In Human Hemoglobin: Betap36a Deoxy Low-Salt (10 Test Sets) Length=146 Score = 28.6 bits (60), Expect = 1.5, Method: Composition-based stats. Identities = 10/11 (90%), Positives = 10/11 (90%), Gaps = 0/11 (0%) Query 2 HLTPVEKSAVT 12 HLTP EKSAVT Sbjct 2 HLTPEEKSAVT 12 >gb|AAA88069.1| beta-globin Length=37 Score = 28.6 bits (60), Expect = 1.5, Method: Composition-based stats. Identities = 11/12 (91%), Positives = 11/12 (91%), Gaps = 0/12 (0%) Query 1 VHLTPVEKSAVT 12 VHLTP EKSAVT Sbjct 2 VHLTPEEKSAVT 13

>pdb|1YE2|B Chain B, T-To-T(High) Quaternary Transitions In Human Hemoglobin: Betay35f Oxy (2mm Ihp, 20% Peg) (1 Test Set)

pdb|1YE2|D Chain D, T-To-T(High) Quaternary Transitions In Human Hemoglobin: Betay35f Oxy (2mm Ihp, 20% Peg) (1 Test Set)

pdb|1Y35|B Chain B, T-To-T(High) Quaternary Transitions In Human Hemoglobin: Betay35f Deoxy Low-Salt (1 Test Set)

pdb|1Y35|D Chain D, T-To-T(High) Quaternary Transitions In Human Hemoglobin: Betay35f Deoxy Low-Salt (1 Test Set) Length=146 Score = 28.6 bits (60), Expect = 1.5, Method: Composition-based stats. Identities = 10/11 (90%), Positives = 10/11 (90%), Gaps = 0/11 (0%) Query 2 HLTPVEKSAVT 12 HLTP EKSAVT Sbjct 2 HLTPEEKSAVT 12

>pdb|1DXU|B Chain B, High-Resolution X-Ray Study Of Deoxy Recombinant Human Hemoglobins Synthesized From Beta-Globins Having Mutated Amino Termini

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pdb|1DXU|D Chain D, High-Resolution X-Ray Study Of Deoxy Recombinant Human Hemoglobins Synthesized From Beta-Globins Having Mutated Amino Termini

pdb|1GLI|B Chain B, Deoxyhemoglobin T38w (Alpha Chains), V1g (Alpha And Beta Chains)

pdb|1GLI|D Chain D, Deoxyhemoglobin T38w (Alpha Chains), V1g (Alpha And Beta Chains)

pdb|1A0U|B Chain B, Hemoglobin (Val Beta1 Met) Mutant

pdb|1A0U|D Chain D, Hemoglobin (Val Beta1 Met) Mutant

pdb|1A0Z|B Chain B, Hemoglobin (Val Beta1 Met) Mutant

pdb|1A0Z|D Chain D, Hemoglobin (Val Beta1 Met) Mutant

pdb|1J7S|B Chain B, Crystal Structure Of Deoxy Hbalphayq, A Mutant Of Hba

pdb|1J7S|D Chain D, Crystal Structure Of Deoxy Hbalphayq, A Mutant Of Hba

pdb|1O1L|B Chain B, Deoxy Hemoglobin (A-Gly-C:v1m,L29w,H58q; B,D:v1m)

pdb|1O1L|D Chain D, Deoxy Hemoglobin (A-Gly-C:v1m,L29w,H58q; B,D:v1m)

pdb|1O1N|B Chain B, Deoxy Hemoglobin (A-Glyglygly-C:v1m,L29w; B,D:v1m)

pdb|1O1N|D Chain D, Deoxy Hemoglobin (A-Glyglygly-C:v1m,L29w; B,D:v1m)

pdb|1Y0T|B Chain B, T-To-T(High) Quaternary Transitions In Human Hemoglobin: Betav1m Deoxy Low-Salt (1 Test Set)

pdb|1Y0T|D Chain D, T-To-T(High) Quaternary Transitions In Human Hemoglobin: Betav1m Deoxy Low-Salt (1 Test Set)

pdb|1Y0W|B Chain B, T-To-Thigh Quaternary Transitions In Human Hemoglobin: Betav1m Deoxy Low-Salt (10 Test Sets)

pdb|1Y0W|D Chain D, T-To-Thigh Quaternary Transitions In Human Hemoglobin: Betav1m Deoxy Low-Salt (10 Test Sets) Length=146 Score = 28.6 bits (60), Expect = 1.5, Method: Composition-based stats. Identities = 10/11 (90%), Positives = 10/11 (90%), Gaps = 0/11 (0%) Query 2 HLTPVEKSAVT 12 HLTP EKSAVT Sbjct 2 HLTPEEKSAVT 12

>pdb|1A00|B Chain B, Hemoglobin (Val Beta1 Met, Trp Beta37 Tyr) Mutant

pdb|1A00|D Chain D, Hemoglobin (Val Beta1 Met, Trp Beta37 Tyr) Mutant

pdb|1YEQ|B Chain B, T-To-T(High) Quaternary Transitions In Human Hemoglobin: Betaw37y Oxy (10 Test Sets)

pdb|1YEQ|D Chain D, T-To-T(High) Quaternary Transitions In Human Hemoglobin: Betaw37y Oxy (10 Test Sets)

pdb|1Y46|B Chain B, T-To-T(High) Quaternary Transitions In Human Hemoglobin: Betaw37y Deoxy Low-Salt (10 Test Sets)

pdb|1Y46|D Chain D, T-To-T(High) Quaternary Transitions In Human Hemoglobin: Betaw37y Deoxy Low-Salt (10 Test Sets) Length=146 Score = 28.6 bits (60), Expect = 1.5, Method: Composition-based stats. Identities = 10/11 (90%), Positives = 10/11 (90%), Gaps = 0/11 (0%) Query 2 HLTPVEKSAVT 12 HLTP EKSAVT Sbjct 2 HLTPEEKSAVT 12

>pdb|1Y5F|B Chain B, T-To-T(High) Quaternary Transitions In Human Hemoglobin: Betal96a Deoxy Low-Salt (1 Test Set)

pdb|1Y5F|D Chain D, T-To-T(High) Quaternary Transitions In Human Hemoglobin: Betal96a Deoxy Low-Salt (1 Test Set)

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Length=146 Score = 28.6 bits (60), Expect = 1.6, Method: Composition-based stats. Identities = 10/11 (90%), Positives = 10/11 (90%), Gaps = 0/11 (0%) Query 2 HLTPVEKSAVT 12 HLTP EKSAVT Sbjct 2 HLTPEEKSAVT 12

>pdb|1Y83|B Chain B, T-To-T(High) Quaternary Transitions In Human Hemoglobin: Betay145g Deoxy Low-Salt (1 Test Set)

pdb|1Y83|D Chain D, T-To-T(High) Quaternary Transitions In Human Hemoglobin: Betay145g Deoxy Low-Salt (1 Test Set) Length=146 Score = 28.6 bits (60), Expect = 1.6, Method: Composition-based stats. Identities = 10/11 (90%), Positives = 10/11 (90%), Gaps = 0/11 (0%) Query 2 HLTPVEKSAVT 12 HLTP EKSAVT Sbjct 2 HLTPEEKSAVT 12

>pdb|1YEU|B Chain B, T-To-T(High) Quaternary Transitions In Human Hemoglobin: Betaw37g Oxy (10 Test Sets)

pdb|1YEU|D Chain D, T-To-T(High) Quaternary Transitions In Human Hemoglobin: Betaw37g Oxy (10 Test Sets)

pdb|1Y4G|B Chain B, T-To-T(High) Quaternary Transitions In Human Hemoglobin: Betaw37g Deoxy Low-Salt (10 Test Sets)

pdb|1Y4G|D Chain D, T-To-T(High) Quaternary Transitions In Human Hemoglobin: Betaw37g Deoxy Low-Salt (10 Test Sets) Length=146 Score = 28.6 bits (60), Expect = 1.6, Method: Composition-based stats. Identities = 10/11 (90%), Positives = 10/11 (90%), Gaps = 0/11 (0%) Query 2 HLTPVEKSAVT 12 HLTP EKSAVT Sbjct 2 HLTPEEKSAVT 12

>pdb|1ABY|B Chain B, Cyanomet Rhb1.1 (Recombinant Hemoglobin)

pdb|1ABY|D Chain D, Cyanomet Rhb1.1 (Recombinant Hemoglobin)

pdb|1ABW|B Chain B, Deoxy Rhb1.1 (Recombinant Hemoglobin)

pdb|1ABW|D Chain D, Deoxy Rhb1.1 (Recombinant Hemoglobin)

pdb|1C7B|B Chain B, Deoxy Rhb1.0 (Recombinant Hemoglobin)

pdb|1C7B|D Chain D, Deoxy Rhb1.0 (Recombinant Hemoglobin)

pdb|1C7C|B Chain B, Deoxy Rhb1.1 (Recombinant Hemoglobin)

pdb|1C7C|D Chain D, Deoxy Rhb1.1 (Recombinant Hemoglobin)

pdb|1C7D|B Chain B, Deoxy Rhb1.2 (Recombinant Hemoglobin)

pdb|1C7D|D Chain D, Deoxy Rhb1.2 (Recombinant Hemoglobin) Length=146 Score = 28.6 bits (60), Expect = 1.6, Method: Composition-based stats. Identities = 10/11 (90%), Positives = 10/11 (90%), Gaps = 0/11 (0%) Query 2 HLTPVEKSAVT 12 HLTP EKSAVT Sbjct 2 HLTPEEKSAVT 12

>pdb|1Y7Z|B Chain B, T-To-T(High) Quaternary Transitions In Human Hemoglobin: Betan108a Deoxy Low-Salt (1 Test Set)

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pdb|1Y7Z|D Chain D, T-To-T(High) Quaternary Transitions In Human Hemoglobin: Betan108a Deoxy Low-Salt (1 Test Set) Length=146 Score = 28.6 bits (60), Expect = 1.6, Method: Composition-based stats. Identities = 10/11 (90%), Positives = 10/11 (90%), Gaps = 0/11 (0%) Query 2 HLTPVEKSAVT 12 HLTP EKSAVT Sbjct 2 HLTPEEKSAVT 12

>pdb|1Y7G|B Chain B, T-To-T(High) Quaternary Transitions In Human Hemoglobin: Betan102a Deoxy Low-Salt (1 Test Set)

pdb|1Y7G|D Chain D, T-To-T(High) Quaternary Transitions In Human Hemoglobin: Betan102a Deoxy Low-Salt (1 Test Set) Length=146 Score = 28.6 bits (60), Expect = 1.6, Method: Composition-based stats. Identities = 10/11 (90%), Positives = 10/11 (90%), Gaps = 0/11 (0%) Query 2 HLTPVEKSAVT 12 HLTP EKSAVT Sbjct 2 HLTPEEKSAVT 12

>pdb|1DXV|B Chain B, High-Resolution X-Ray Study Of Deoxy Recombinant Human Hemoglobins Synthesized From Beta-Globins Having Mutated Amino Termini

pdb|1DXV|D Chain D, High-Resolution X-Ray Study Of Deoxy Recombinant Human Hemoglobins Synthesized From Beta-Globins Having Mutated Amino Termini Length=146 Score = 28.6 bits (60), Expect = 1.6, Method: Composition-based stats. Identities = 10/11 (90%), Positives = 10/11 (90%), Gaps = 0/11 (0%) Query 2 HLTPVEKSAVT 12 HLTP EKSAVT Sbjct 2 HLTPEEKSAVT 12

>pdb|1Y4V|B Chain B, T-To-T(High) Quaternary Transitions In Human Hemoglobin: Betac93a Deoxy Low-Salt (1 Test Set)

pdb|1Y4V|D Chain D, T-To-T(High) Quaternary Transitions In Human Hemoglobin: Betac93a Deoxy Low-Salt (1 Test Set) Length=146 Score = 28.6 bits (60), Expect = 1.6, Method: Composition-based stats. Identities = 10/11 (90%), Positives = 10/11 (90%), Gaps = 0/11 (0%) Query 2 HLTPVEKSAVT 12 HLTP EKSAVT Sbjct 2 HLTPEEKSAVT 12

>pdb|1Y4Q|B Chain B, T-To-T(High) Quaternary Transitions In Human Hemoglobin: Betaf42a Deoxy Low-Salt (1 Test Set)

pdb|1Y4Q|D Chain D, T-To-T(High) Quaternary Transitions In Human Hemoglobin: Betaf42a Deoxy Low-Salt (1 Test Set) Length=146 Score = 28.6 bits (60), Expect = 1.6, Method: Composition-based stats. Identities = 10/11 (90%), Positives = 10/11 (90%), Gaps = 0/11 (0%) Query 2 HLTPVEKSAVT 12 HLTP EKSAVT Sbjct 2 HLTPEEKSAVT 12

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>pdb|1Y4R|B Chain B, T-To-T(High) Quaternary Transitions In Human Hemoglobin: Betaf45a Deoxy Low-Salt (1 Test Set)

pdb|1Y4R|D Chain D, T-To-T(High) Quaternary Transitions In Human Hemoglobin: Betaf45a Deoxy Low-Salt (1 Test Set) Length=146 Score = 28.6 bits (60), Expect = 1.6, Method: Composition-based stats. Identities = 10/11 (90%), Positives = 10/11 (90%), Gaps = 0/11 (0%) Query 2 HLTPVEKSAVT 12 HLTP EKSAVT Sbjct 2 HLTPEEKSAVT 12

>pdb|1Y5K|B Chain B, T-To-T(High) Quaternary Transitions In Human Hemoglobin: Betad99a Deoxy Low-Salt (10 Test Sets)

pdb|1Y5K|D Chain D, T-To-T(High) Quaternary Transitions In Human Hemoglobin: Betad99a Deoxy Low-Salt (10 Test Sets) Length=146 Score = 28.6 bits (60), Expect = 1.6, Method: Composition-based stats. Identities = 10/11 (90%), Positives = 10/11 (90%), Gaps = 0/11 (0%) Query 2 HLTPVEKSAVT 12 HLTP EKSAVT Sbjct 2 HLTPEEKSAVT 12

>pdb|1YE1|B Chain B, T-To-T(High) Quaternary Transitions In Human Hemoglobin: Betay35a Oxy (2mm Ihp, 20% Peg) (1 Test Set)

pdb|1YE1|D Chain D, T-To-T(High) Quaternary Transitions In Human Hemoglobin: Betay35a Oxy (2mm Ihp, 20% Peg) (1 Test Set)

pdb|1Y31|B Chain B, T-To-T(High) Quaternary Transitions In Human Hemoglobin: Betay35a Deoxy Low-Salt (1 Test Set)

pdb|1Y31|D Chain D, T-To-T(High) Quaternary Transitions In Human Hemoglobin: Betay35a Deoxy Low-Salt (1 Test Set) Length=146 Score = 28.6 bits (60), Expect = 1.6, Method: Composition-based stats. Identities = 10/11 (90%), Positives = 10/11 (90%), Gaps = 0/11 (0%) Query 2 HLTPVEKSAVT 12 HLTP EKSAVT Sbjct 2 HLTPEEKSAVT 12

>pdb|1RQA|B Chain B, Crystallographic Analysis Of The Interaction Of Nitric Oxide With Quaternary-T Human Hemoglobin. Beta W73e Hemoglobin Exposed To No Under Anaerobic Conditions

pdb|1RQA|D Chain D, Crystallographic Analysis Of The Interaction Of Nitric Oxide With Quaternary-T Human Hemoglobin. Beta W73e Hemoglobin Exposed To No Under Anaerobic Conditions

pdb|1YEV|B Chain B, T-To-T(High) Quaternary Transitions In Human Hemoglobin: Betaw37e Oxy (10 Test Sets)

pdb|1YEV|D Chain D, T-To-T(High) Quaternary Transitions In Human Hemoglobin: Betaw37e Oxy (10 Test Sets)

pdb|1YGD|B Chain B, T-To-T(High) Quaternary Transitions In Human Hemoglobin: Betaw37e Alpha Zinc Beta Oxy (10 Test Sets)

pdb|1YGD|D Chain D, T-To-T(High) Quaternary Transitions In Human Hemoglobin: Betaw37e Alpha Zinc Beta Oxy (10 Test Sets)

pdb|1Y4P|B Chain B, T-To-T(High) Quaternary Transitions In Human Hemoglobin: Betaw37e Deoxy Low-Salt (10 Test Sets)

pdb|1Y4P|D Chain D, T-To-T(High) Quaternary Transitions In Human Hemoglobin: Betaw37e Deoxy Low-Salt (10 Test Sets)

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Length=146 Score = 28.6 bits (60), Expect = 1.6, Method: Composition-based stats. Identities = 10/11 (90%), Positives = 10/11 (90%), Gaps = 0/11 (0%) Query 2 HLTPVEKSAVT 12 HLTP EKSAVT Sbjct 2 HLTPEEKSAVT 12

>pdb|1A01|B Chain B, Hemoglobin (Val Beta1 Met, Trp Beta37 Ala) Mutant

pdb|1A01|D Chain D, Hemoglobin (Val Beta1 Met, Trp Beta37 Ala) Mutant

pdb|1YEO|B Chain B, T-To-T(High) Quaternary Transitions In Human Hemoglobin: Betaw37a Oxy (10 Test Sets)

pdb|1YEO|D Chain D, T-To-T(High) Quaternary Transitions In Human Hemoglobin: Betaw37a Oxy (10 Test Sets)

pdb|1YIE|B Chain B, T-To-Thigh Quaternary Transitions In Human Hemoglobin: Betaw37a Oxy (2.2mm Ihp, 13% Peg) (1 Test Set)

pdb|1YIE|D Chain D, T-To-Thigh Quaternary Transitions In Human Hemoglobin: Betaw37a Oxy (2.2mm Ihp, 13% Peg) (1 Test Set)

pdb|1Y4F|B Chain B, T-To-T(High) Quaternary Transitions In Human Hemoglobin: Betaw37a Deoxy Low-Salt (10 Test Sets)

pdb|1Y4F|D Chain D, T-To-T(High) Quaternary Transitions In Human Hemoglobin: Betaw37a Deoxy Low-Salt (10 Test Sets) Length=146 Score = 28.6 bits (60), Expect = 1.6, Method: Composition-based stats. Identities = 10/11 (90%), Positives = 10/11 (90%), Gaps = 0/11 (0%) Query 2 HLTPVEKSAVT 12 HLTP EKSAVT Sbjct 2 HLTPEEKSAVT 12

>pdb|1O1P|B Chain B, Deoxy Hemoglobin (A-Gly-C:v1m; B,D:v1m,C93a,N108k)

pdb|1O1P|D Chain D, Deoxy Hemoglobin (A-Gly-C:v1m; B,D:v1m,C93a,N108k) Length=146 Score = 28.6 bits (60), Expect = 1.7, Method: Composition-based stats. Identities = 10/11 (90%), Positives = 10/11 (90%), Gaps = 0/11 (0%) Query 2 HLTPVEKSAVT 12 HLTP EKSAVT Sbjct 2 HLTPEEKSAVT 12

>pdb|1YG5|B Chain B, T-To-T(High) Quaternary Transitions In Human Hemoglobin: Betaw37h Oxy (2mm Ihp, 20% Peg) (10 Test Sets)

pdb|1YG5|D Chain D, T-To-T(High) Quaternary Transitions In Human Hemoglobin: Betaw37h Oxy (2mm Ihp, 20% Peg) (10 Test Sets)

pdb|1Y4B|B Chain B, T-To-T(High) Quaternary Transitions In Human Hemoglobin: Betaw37h Deoxy Low-Salt (10 Test Sets)

pdb|1Y4B|D Chain D, T-To-T(High) Quaternary Transitions In Human Hemoglobin: Betaw37h Deoxy Low-Salt (10 Test Sets) Length=146 Score = 28.6 bits (60), Expect = 1.7, Method: Composition-based stats. Identities = 10/11 (90%), Positives = 10/11 (90%), Gaps = 0/11 (0%) Query 2 HLTPVEKSAVT 12 HLTP EKSAVT Sbjct 2 HLTPEEKSAVT 12

>gb|AAB60348.1| beta globin [Homo sapiens]

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Length=42 Score = 28.6 bits (60), Expect = 1.8, Method: Composition-based stats. Identities = 11/12 (91%), Positives = 11/12 (91%), Gaps = 0/12 (0%) Query 1 VHLTPVEKSAVT 12 VHLTP EKSAVT Sbjct 2 VHLTPEEKSAVT 13 >gb|AAG28778.1|AF305716_1 truncated beta-globin [Homo sapiens] gb|AAK28064.1|AF319477_1 truncated beta-globin [Homo sapiens] gb|AAK28065.1|AF319478_1 truncated beta-globin [Homo sapiens] Length=17 Score = 28.2 bits (59), Expect = 2.3, Method: Composition-based stats. Identities = 11/12 (91%), Positives = 11/12 (91%), Gaps = 0/12 (0%) Query 1 VHLTPVEKSAVT 12 VHLTP EKSAVT Sbjct 2 VHLTPEEKSAVT 13 >gb|AAK39553.1|AF358870_1 truncated hemoglobin beta chain [Homo sapiens] Length=26 Score = 28.2 bits (59), Expect = 2.4, Method: Composition-based stats. Identities = 11/12 (91%), Positives = 11/12 (91%), Gaps = 0/12 (0%) Query 1 VHLTPVEKSAVT 12 VHLTP EKSAVT Sbjct 2 VHLTPEEKSAVT 13

>pdb|6HBW|B Chain B, Crystal Structure Of Deoxy-Human Hemoglobin Beta6 Glu->trp

pdb|6HBW|D Chain D, Crystal Structure Of Deoxy-Human Hemoglobin Beta6 Glu->trpLength=146 Score = 27.8 bits (58), Expect = 2.7, Method: Composition-based stats. Identities = 11/12 (91%), Positives = 11/12 (91%), Gaps = 0/12 (0%) Query 1 VHLTPVEKSAVT 12 VHLTP EKSAVT Sbjct 1 VHLTPWEKSAVT 12

>gb|AAP03091.1| beta-globin [Homo sapiens] Length=20 Score = 27.8 bits (58), Expect = 2.7, Method: Composition-based stats. Identities = 11/12 (91%), Positives = 11/12 (91%), Gaps = 0/12 (0%) Query 1 VHLTPVEKSAVT 12 VHLTP EKSAVT Sbjct 2 VHLTPEEKSAVT 13 >gb|AAA88055.1| beta-globin Length=22 Score = 27.8 bits (58), Expect = 3.3, Method: Composition-based stats. Identities = 11/12 (91%), Positives = 11/12 (91%), Gaps = 0/12 (0%) Query 1 VHLTPVEKSAVT 12 VHLTP EKSAVT Sbjct 2 VHLTPEEKSAVT 13

>gb|AAZ83699.1| delta-globin Troodos variant [Homo sapiens] Length=147 Score = 27.4 bits (57), Expect = 4.5, Method: Composition-based stats. Identities = 9/11 (81%), Positives = 10/11 (90%), Gaps = 0/11 (0%)

Page 32 of 35NCBI Blast:Patient 1

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Page 33: BLAST Basic Local Alignment Search Tooldavid.glascofamily.com/sb228/assignments/assignment… ·  · 2007-11-02Job Title: Patient 1 Show Conserved Domains No putative conserved domains

Query 1 VHLTPVEKSAV 11 VHLTP EK+AV Sbjct 2 VHLTPEEKTAV 12

>gb|AAZ16491.1| hemoglobin delta Etolia variant [Homo sapiens] Length=105 Score = 27.4 bits (57), Expect = 4.5, Method: Composition-based stats. Identities = 9/11 (81%), Positives = 10/11 (90%), Gaps = 0/11 (0%) Query 1 VHLTPVEKSAV 11 VHLTP EK+AV Sbjct 2 VHLTPEEKTAV 12

>ref|NP_000510.1| delta globin [Homo sapiens]

sp|P02042|HBD_HUMAN Hemoglobin subunit delta (Hemoglobin delta chain) (Delta-

emb|CAA23763.1| delta globin [Homo sapiens]

gb|AAA16333.1| delta-globin [Homo sapiens]

gb|AAK68847.1| delta globin [Homo sapiens]

gb|AAL72102.1| delta-globin [Homo sapiens]

gb|AAL72103.1| delta-globin [Homo sapiens]

gb|AAL72104.1| delta-globin [Homo sapiens]

gb|AAL72105.1| delta-globin [Homo sapiens]

gb|AAL72106.1| delta-globin [Homo sapiens]

gb|AAL72107.1| delta-globin [Homo sapiens]

gb|AAL72108.1| delta-globin [Homo sapiens]

gb|AAL72109.1| delta-globin [Homo sapiens]

gb|AAL72110.1| delta-globin [Homo sapiens]

gb|AAL72111.1| delta-globin [Homo sapiens]

gb|AAL72112.1| delta-globin [Homo sapiens]

gb|AAL72113.1| delta-globin [Homo sapiens]

gb|AAL72114.1| delta-globin [Homo sapiens]

gb|AAL72115.1| delta-globin [Homo sapiens]

gb|AAL72116.1| delta-globin [Homo sapiens]

gb|AAL72118.1| delta-globin [Homo sapiens]

gb|AAH69307.1| Hemoglobin, delta [Homo sapiens]

gb|AAH70282.1| Hemoglobin, delta [Homo sapiens] gb|ABK42072.1| delta-globin chain [Homo sapiens]

gb|ABK79071.1| hemoglobin delta [Homo sapiens]

gb|ABK79072.1| hemoglobin delta [Homo sapiens]

gb|EAW68805.1| hemoglobin, delta [Homo sapiens] Length=147 Score = 27.4 bits (57), Expect = 4.5, Method: Composition-based stats. Identities = 9/11 (81%), Positives = 10/11 (90%), Gaps = 0/11 (0%) Query 1 VHLTPVEKSAV 11 VHLTP EK+AV Sbjct 2 VHLTPEEKTAV 12

>pdb|1SHR|B Chain B, Crystal Structure Of Ferrocyanide Bound Human Hemoglobin A2 At 1.88a Resolution

Page 33 of 35NCBI Blast:Patient 1

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pdb|1SHR|D Chain D, Crystal Structure Of Ferrocyanide Bound Human Hemoglobin A2 At 1.88a Resolution

pdb|1SI4|B Chain B, Crystal Structure Of Human Hemoglobin A2 (In R2 State) At 2.2 A Resolution

pdb|1SI4|D Chain D, Crystal Structure Of Human Hemoglobin A2 (In R2 State) At 2.2 A Resolution Length=146 Score = 26.9 bits (56), Expect = 4.8, Method: Composition-based stats. Identities = 9/11 (81%), Positives = 10/11 (90%), Gaps = 0/11 (0%) Query 1 VHLTPVEKSAV 11 VHLTP EK+AV Sbjct 1 VHLTPEEKTAV 11

>gb|AAU08171.1| hemoglobin Lepore-Baltimore [Homo sapiens] Length=105 Score = 26.9 bits (56), Expect = 4.8, Method: Composition-based stats. Identities = 9/11 (81%), Positives = 10/11 (90%), Gaps = 0/11 (0%) Query 1 VHLTPVEKSAV 11 VHLTP EK+AV Sbjct 2 VHLTPEEKTAV 12 >prf||640488A hemoglobin delta Length=146 Score = 26.9 bits (56), Expect = 4.8, Method: Composition-based stats. Identities = 9/11 (81%), Positives = 10/11 (90%), Gaps = 0/11 (0%) Query 1 VHLTPVEKSAV 11 VHLTP EK+AV Sbjct 1 VHLTPEEKTAV 11 >gb|AAA53154.1| beta-hemoglobin Length=61 Score = 26.5 bits (55), Expect = 7.8, Method: Composition-based stats. Identities = 9/11 (81%), Positives = 10/11 (90%), Gaps = 0/11 (0%) Query 1 VHLTPVEKSAV 11 VHLTP EK+AV Sbjct 2 VHLTPEEKTAV 12

>dbj|BAD92939.1| protein tyrosine phosphatase, receptor type, A isoform 2 precursor variant [Homo sapiens] Length=651 Score = 25.7 bits (53), Expect = 11, Method: Composition-based stats. Identities = 7/7 (100%), Positives = 7/7 (100%), Gaps = 0/7 (0%) Query 1 VHLTPVE 7 VHLTPVE Sbjct 131 VHLTPVE 137 >gb|AAD34034.1|AF083884_1 mutant beta-globin [Homo sapiens] Length=18 Score = 25.7 bits (53), Expect = 12, Method: Composition-based stats. Identities = 9/10 (90%), Positives = 9/10 (90%), Gaps = 0/10 (0%) Query 1 VHLTPVEKSA 10 VHLTP EKSA Sbjct 2 VHLTPEEKSA 11

Page 34 of 35NCBI Blast:Patient 1

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Page 35: BLAST Basic Local Alignment Search Tooldavid.glascofamily.com/sb228/assignments/assignment… ·  · 2007-11-02Job Title: Patient 1 Show Conserved Domains No putative conserved domains

Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding

environmental samples from WGS projects

Posted date: Sep 26, 2007 5:57 PM

Number of letters in database: 69,261,746

Number of sequences in database: 192,912

Lambda K H

0.347 0.287 1.62

Gapped

Lambda K H

0.294 0.110 0.610

Matrix: PAM30

Gap Penalties: Existence: 9, Extension: 1

Number of Sequences: 192912

Number of Hits to DB: 1032496

Number of extensions: 15651

Number of successful extensions: 6586

Number of sequences better than 200000: 5646

Number of HSP's better than 200000 without gapping: 0

Number of HSP's gapped: 6585

Number of HSP's successfully gapped: 6583

Length of query: 12

Length of database: 69261746

Length adjustment: 2

Effective length of query: 10

Effective length of database: 68875922

Effective search space: 688759220

Effective search space used: 688759220

T: 11

A: 40

X1: 14 (7.0 bits)

X2: 35 (14.8 bits)

X3: 58 (24.6 bits)

S1: 21 (12.1 bits)

S2: 21 (12.1 bits)

Page 35 of 35NCBI Blast:Patient 1

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