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    2012 Collections Booklet

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    SPECIALSECTION

    CREDIT:ANNEWESTON/CANCERRESEARCHUK/VISUALSUNLIMITEDINC.

    CONTENTS

    News

    U.S. Cancer Trends

    Reviews

    M. R. Stratton

    C. L. Chaffer and R. A . Weinberg

    R. D. Schreiber et al.

    See also Editorial p. 1491; Report p. 1612; and Science

    Translational Medicine includingResearch Article by L. Sequist

    et al., ScienceSignaling, ScienceCareers, Video, and Science

    Podcast at www.sciencemag.org/special/cancer2011/.

    Cancer Crusadeat 40

    I N T R O D U C T I O N

    In this issue of Science, we commemorate the 40th anniversary of the U.S.

    National Cancer Act, which provided a massive stimulus for cancer research.

    At the star t of this Cancer Crusade, researchers were already tackling some

    tough questions, as reflected in papers published by Sciencein 1971. Among

    them: How do abnormalities in chromosome number arise in tumor cells? Can

    tissue-specific markers be used to determine the epithelial versus mesenchymalorigin of a solid tumor? Can the immune system be manipulated so that it recog-nizes tumor cells as foreign invaders that must be eliminated from the body? Do

    viruses play a role in human cancer?

    Skeptics might argue that 40 years later, cancer researchers continue to grap-ple with the same questions. Perhaps theres some truth in this. But our hope is

    that the selection of articles in this special section of Sciencewill explain why

    many of these questions have proved so challenging and, more importantly, how

    contemporary cancer research is providing a clearer view of the biology that will

    lead to answers. Stratton (p.) discusses international efforts to sequence

    the complete genomes of a wide range of human tumor types and the impact

    that this sequence information is anticipated to have on our understanding of

    cancer biology as well as our ability to detect, diagnose, and treat the disease. A

    working model for cancer cell metastasis is presented by Chaffer and Weinberg

    (p. ), who highlight the important role of cancer stem cells and a develop-mental process called the epithelial-mesenchymal transition. Schreiber et al.(p.

    ) describe cancer immunoediting, a conceptual framework that integrates

    the immune systems dual roles in inhibiting and promoting cancer growth.News repor ts examine other significant challenges for the field: Jocelyn

    Kaiser (p. ) describes how even the best new drugs eventually seem to fail

    and how they might be made more effective. David Malakoff (p. ) outlines a

    key social issue: the fast-rising cost of care. Martin Enserink (p. ) reports on

    efforts to close the huge disparity between cancer treatment in rich and develop-ing countries. And Mitch Leslie (p. ) describes how researchers are taking

    a new look at the role of p53 and the related proteins p63 and p73 in tumors.A video report by Robert Frederick appears online at www.sciencemag.

    org/special/cancer2011/, along with links to additional reading material.

    ScienceCareers features an article on cancer clinical trials training (http://scim.ag/cancertrialstraining) and a Q&A with Memorial Sloan-Kettering clinician-investigator David Solit (http://scim.ag/solitqanda).

    It is worth noting that at least one of the questions that concerned cancer

    researchers writing in Scienceback in 1971 has been definitively answered. We

    now know that viruses do in fact play a causal role in certain human cancers,

    and, thanks to decades of tumor virology research, vaccines against these viruses

    have been developed into successful cancer-preventive agents. Thats something

    to celebrate. PAULA KIBERSTIS AND ELIOT MARSHALL

    1539www.sciencemag.org SCIENCE VOL 331 25 MARCH 2011

    pecialIntropage.indd 1539 3/18/11 4:42

    See also Science Translational Medicine including Research Article

    by L. Sequistet al., Science Signaling, Science Careers, Video, and

    Science Podcast at www.sciencemag.org/special/cancer2011/.

    www.sciencemag.org SCIENCE 1

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    CANCERCrusade at 40

    U.S. Cancer Trends

    SOURCE FOR CANCER STATISTICS: NCI SURVEILLANCE RESEARCH PROGRAM; PHOTOS (LEFT TO RIGHT): LINDA BARTLETT/NCI; BILL BRANSON/NCI; N

    010

    20

    30

    40

    50

    60

    70

    80

    75 77 79 81 83 85 87 89 91 93 95 97 99 01 03 05 07

    Lung & Bronchus

    The good news: Lung cancer incidence amongmen began to decline in the early 1980s; the deathrate, in the early 1990s. This shows the power ofpreventionthrough a campaign to curb tobaccouse. The bad news: The death rate is far higher forAfrican-American men than for white men, anddeaths among women (of all races) continued toclimb until recent years.

    Incidence per100,000

    Cancer Research and

    The $90 Billion MetaphorTHERE NEVER WAS AN OFFICIAL WAR ON CANCER. THAT PHRASE FROM NEWSreports and debates attached itself to the U.S. program that began when Presi-dent Richard Nixon signed the National Cancer Act in December 1971. Thelaw made big promises and gave the U.S. National Cancer Institute (NCI) atoken measure of independence. It also encouraged the idea that cancer could

    be targeted, like a trip to the moon, and cured. The law was important forresearch, RAND medical historian and policy analyst Richard Rettig has writ-ten: It stopped a decline in NCIs budget.

    This reversal began in Congress. Urged on by health activists such as MaryLasker, leading Democrats in 1970 adopted curing cancer as their cause. Awarethat it might become a national issue, Nixon embraced it, too. The resulting leg-islation raised NCIs budget almost overnight by 23% to $233 million; NCIsfunding has continued to climb since then to more than $5 billion per yearalthough in recent years inflation has grown faster. Since the 1971 act, NCI hasspent about $90 billion on science, treatment, and prevention of cancer.

    The war metaphor remains part of this legacyand a target for skeptics. In1986, former NCI biostatistician John Bailar stirred controversy with a bleakanalysis in The New England Journal of Medicine, noting that cancer inci-dence and mortality rates hadnt changed fundamentally in 15 years. He sug-gested that the nation was losing the war against cancer. Sweeping declara-tions continued. In 2003, thenNCI Director Andrew von Eschenbach set agoal of ending suffering and death from cancer by 2015. Such broad claimsinvite balloon-pricking.

    But if one sets aside the rhetoric, says Allen Lichter, executive director ofthe American Society of Clinical Oncology, its evident that the cancer cam-

    paign has changed therapy and saved lives (see indicators for the seven dead-liest cancers, right). It is true that for certain cancersof the pancreas, brain,and liver, for examplethe picture has not improved. But the overall U.S. can-cer mortality rate began to decline in the 1990s. And clinical care looks noth-ing like it did 40 years ago, says Lichter, who began training as an oncolo-gist in the 1970s. He speaks of a revolution that took lessons from the 1960sadvances against childhood leukemia to develop adjuvant therapy: the crazyidea that chemotherapy should be given to patients in remission to treat pre-sumed microscopic disease that has spread. His list of benefits continues with

    breast-conserving and microscopic surgery, imaging for diagnosis and diseasemanagement, molecular analysis of tumors and targeted drug therapy, longersurvival times, and much better palliative care. Looking for progress in cancercan feel like watching the hands of a clock, Lichter admits. But things aredefinitely moving in the right direction.

    ELIOT MARSHALL

    Deaths per 100,000

    50

    60

    70

    0

    10

    20

    30

    40

    75 77 79 81 83 85 87 89 91 93 95 97 99 01 03 05 07

    Incidence per 100,000

    Deaths per 100,000

    Colon & Rectum

    The U.S. National Cancer Institute (NCI) spotlighteddeclining colorectal cancer trends in its 2010Annual Report to the Nation on the Status of Can-cer. Improved diet and screening with colonoscopy,among other early-detection techniques, are help-

    ing to control the second-deadliest cancer. NCIsmodeling predicts that overall mortality could drop50% by 2020.

    40 Years of the War on Cancer

    1971

    President RichardNixon signs theNational CancerAct promoting theNational CancerInstitute.

    1973

    NCI launchesSurveillanceEpidemiologyand End Resultsprogram tocollect U.S.cancer data.

    1978

    Clinical test-ing begins ofinterferon-,the first bio-logical cancertherapy.

    1980

    Robert Gallo and others isolatehuman T-lymphotropic virus-a cause ocancer.

    2010EstimatedDeaths 157,300

    2010EstimatedDeaths 51,370

    FDA approvestamoxifen toprevent breastcancer recurrence.

    1979

    Researchersdiscover p53,the mutatedgene most oftenseen in tumors.

    5-YearMortalityTrend -1.6%

    5-YearMortalityTrend -3.0%

    NEWS

    2 SCIENCE www.sciencemag.org

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    Breast (female)

    Efforts to detect and treat invasive breast cancer partly explain whyincidence rose dramatically in the 1980s, reaching a peak for allraces in 1999. Death rates from breast cancer have been decliningsteadily since 198990, although 5-year survival continues to be farhigher for whites than African Americans.

    0

    30

    90

    120

    150

    60

    757779 8183 85878991 93 95 97 99 010305 07

    Incidence per 100,000

    Deaths per 100,000

    Pancreas

    In part because it is difficult to detect early, pancreatic cancerremains the fourth-deadliest cancer, and incidence and mortalityhave hardly budged. The average patient diagnosed with advanceddisease will live only 6 months.

    10

    12

    14

    0

    2

    4

    6

    8

    757779 8183 85878991 93 95 97 99 010305 07

    Incidence per 100,000

    Deaths per 100,000

    2010EstimatedDeaths 36,800

    0

    40

    80

    120

    160

    200

    240

    757779 8183 85 87 899193 959799 010305 07

    Deaths per 100,000

    Incidenceper 100,000

    Leukemia

    Death rates for the four main types of leukemia have slowlydeclined, thanks largely to treatments that combine chemotherapy

    drugs. The survival rate is now about 80% for childhood acutelymphoblastic leukemia.

    10

    12

    14

    16

    2

    0

    4

    6

    8

    757779 8183 85 87 899193 959799 010305 07

    Incidence per 100,000

    Deaths per 100,000

    SOURCE FOR CANCER STATISTICS: NCI SURVEILLANCE RESEARCH PROGRAM; PHOTOS (LEFT TO RIGHT): ISTOCKPHOTO; THINKSTOCK; NCI; PAUL SAKUMA/AP

    1983

    Researchers createsevere combinedimmunodeficientmice, a model forcancer research.

    1989

    Nobel Prize fordiscovering the firstproto-oncogene(Src) awarded toHarold Varmus andMichael Bishop.

    1981

    First cancer-prevention vaccineintroducedagainst humanhepatitis B virus.

    2010EstimatedDeaths 39,840

    2010EstimatedDeaths 32,050

    2010EstimatedDeaths 21,840

    1985

    Randomizedtrial shows thatlumpectomy plusradiation areas effective asmastectomy forbreast cancer.

    1986

    Biostatistician JohnBailar writes in TheNew England Jour-nal of Medicine, Weare losing the waragainst cancer.

    5-YearMortalityTrend -2.2%

    5-YearMortalityTrend +0.6%

    5-YearMortalityTrend -3.3%

    5-YearMortalityTrend -1.3%

    Liver

    Mortality and incidence for liver and bile duct cancers have risensteadily, linked to infections with hepatitis B and C, which are top riskfactors, along with alcohol abuse. Because tumors usually cannot beremoved with surgery, post-diagnosis survival is brief.

    5

    6

    7

    8

    0

    1

    2

    3

    4

    757779 8183 85878991 93 959799 010305 07

    Incidence per 100,000

    Deaths per 100,0002010Estimated

    Deaths18,910

    5-YearMortality

    Trend +2.2%

    Prostate

    The incidence of prostate cancer, the second most common cancerin men, spiked in the early 1990s after regulators approved theprostate-specific antigen (PSA) screening test. Most men treatedafter a PSA test had nonlethal tumors.

    >

    www.sciencemag.org SCIENCE 3

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    ONE OF THE BEST HOPES FOR ANTICANCER

    drugs in the past decade comes from a simple

    idea: Find a weak point in a tumors molec-

    ular machinery and throw a well-aimed

    wrench into it. The strategy has led to some

    dramatic successes, stopping the growth of

    certain cancers in their tracks while doing

    little or no harm to healthy tissue. But the

    pursuit of whats known as targeted ther-

    apy has taken many of those involved on

    a roller-coaster ride. The new treatments,

    after a brilliant debut, tend to lose potency

    as tumors develop resistance. After a pause

    lasting weeks or months, the cancer may

    begin to grow again.

    Understanding why this occurs and devis-

    ing therapies that will overcome resistance

    are the main focus of a growing community

    of cancer researchers. A recent example of

    their quest involves a drug designed to stop

    metastatic melanoma, a highly aggressive

    disease for which there is no effective treat-

    ment today.

    In late 2007, Roche and a biotech com-

    pany called Plexxikon began testing a new

    targeted drug called PLX4032

    for patients with advanced

    melanoma. When research-

    ers presented the first scans

    from treated patients, audi-

    ences were stunned: In some

    cases, the tumors had almost

    disappeared. Eighty percent of

    patients got better, a remark-

    able response that seemed to

    validate the concept of targeted

    therapy. There was jubila-tion about how well it works,

    says Charles Sawyers, a can-

    cer researcher at Memorial Sloan-Kettering

    Cancer Center (MSKCC) in New York City.

    Sawyers is a pioneer of the targeted approach

    and co-developer of the drug Gleevec that

    has been spectacularly effective against

    chronic myelogenous leukemia (CML).

    But then came the letdown: After about

    7 months, most melanoma patients on the

    PLX4032 pill saw their tumors begin to

    grow again; many died. Last fall, trying to

    learn what enabled that puzzling regrowth,

    several research teams showed that resistant

    tumor cells had found ways to switch back

    on the cell pathway that the PLX4032 drug

    had jammed. They gave some of the relapsed

    patients another new drug that blocks the

    pathway at another point, hop ing their

    tumors would shrink under the dual assault.

    The results are still coming in.

    In the past few years, researchers have

    reported dramatic responses to a hand-

    ful of new drugs that are given to patients

    with a specific mutation in their tumors. But

    the emerging pattern is that although these

    drugs can shrink solid tumors and extend

    patients lives, they never completely elim-

    inate the cancer. For reasons still not well

    understood, the initial success is only a foot

    in the door, says cancer geneticist Michael

    Stratton of the Wellcome Trust Sanger Insti-

    tute in Cambridge, U.K., whose team hasfound several genetic weak spots in tumors.

    Researchers are still working out exactly

    what to do next. On the surface, the answer

    is straightforward: Identify the ways that

    tumors resist the drug, then find or develop

    second-generation drugs that block these

    escape routes. With the right drugs on hand,

    researchers envision designing a cocktail

    perhaps two, three, or more drugsthat, if

    given when a patient is first diagnosed, could

    stop tumors from ever evading the block-

    ade. This approach has worked for patients

    infected with HIV, who usually take three

    antiviral drugs. Sawyers and many other

    researchers say theres no reason it shouldnt

    work for cancer.

    But getting a therapy to work and getting

    it to endure are two different things. Even if

    a combination therapy stops tumor growth,

    it may not buy patients more than a tempo-

    rary reprieve, researchers admit. To stretch

    the benefit over years, it might be necessary

    to devise one complex cocktail after another,

    each tailored to a patients evolving tumors.

    Tossing in the wrench

    Molecular targeting builds on what research-ers have learned from 30 years of work on

    the genetic changes behind cancer. Uncon-

    Combining Targeted Drugs

    To Stop Resistant TumorsEven the most successful targeted therapies lose potency with time. Researchers hope

    to figure out how tumors escape; they aim to turn months of survival into years

    NEWS

    1991

    NationalBreast CancerCoalitionlaunched, inthe AIDSactivist style.

    1992

    FDAapprovessyntheticyew barkderivative, Taxol(paclitaxel), forbreast cancer.

    1993

    Congress ordersstudy of environmen-tal causes of breastcancer on LongIsland; the 10-yearstudy will yield nosignificant findings.

    1994

    BRCA1gene,identified as arisk for breastand ovarian can-cer, is cloned;BRCA2clonedthe next year.

    Sciencenamesp53 Moleculeof the Year.

    1998

    FDA approvesHerceptin (trastu-zumab), a mono-clonal antibody, formetastatic breasttumors that over-produce HER2.

    1996

    American CancerSociety and oth-ers report the firstsustained decline inoverall U.S. cancerdeaths, a drop of 2.6%from 1991 to 1995.

    POSSIBLE COCKTAILS OF TARGETED CANCER DRUGS

    Median time PossibleDrug Cancer Target to resistance cocktails

    Gleevec chronic myelogenous BCR-ABL fusion 5 years Dasatinib or nilotinib leukemia protein (17% of patients) + T315I inhibitor

    Iressa, non-small cell lung EGFR receptor 12 months Tarceva + T790M Tarceva cancer with inhibitor + (MET inhibitor EGFR mutation or PI3K inhibitor)

    PLX4032 melanoma with V600E BRAF protein 7 months PLX4032 + MEK inhibitorBRAF mutation

    4 SCIENCE www.sciencemag.org

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    CREDITS(TOPTOB

    OTTOM):ADAPTEDFROME

    NGELMAN

    &JNNE,CLINICALCANCERRESEARCH14(

    15MAY2008);NCI;GLOGAUPHOTO

    GRAPHY/NCI;NCI

    trolled cell growth is often driven by an

    aberrant protein in the cell membrane

    that transmits a spurious signal to the

    nucleus, instructing it to divide. Anti-

    bodies or small molecules can be used

    to block these overactive cell recep-tors, or a mutated protein farther down

    the signaling chain, causing tumors to

    shrink dramatically. (By contrast, stan-

    dard chemotherapy targets all dividing

    cells in the body, which makes it much

    more toxic.)

    But because tumors are geneti-

    cally diverse, resistance seems inev-

    itable. Once a targeted drug wipes

    out the bulk of a tumor, cells harbor-

    ing resistance genes, or alternative

    growth instructions, have a chance to

    grow. Even a tiny population of resis-

    tant cells can expand and take over.

    Every single targeted therapy will

    select for resistance in this way, says

    Carlo Maley, who studies the evolution

    of cancer at the University of Califor-

    nia, San Francisco.

    Gleevec is the classic example. In

    95% of patients with CML, the can-

    cer is driven by a gene called BCR-ABLthat

    is formed when two chromosomes swap

    pieces, making a fused segment known as

    the Philadelphia chromosome. Gleevec,

    made by Novartis, is a small molecule that

    blocks the BCR-ABL fusion protein. The

    drug was approved for CML by regulators

    10 years ago this May, and many patients on

    it live for at least a decade. But about 17%

    of patients develop resistance within 5 years.

    Gleevecs developers anticipated this,

    they say. Sawyers and others have shown

    that in most cases resistance results from

    mutated versions of the BCR-ABL pro-

    tein that are not affected by the drug and

    continue to tell cells to grow. Companies

    developed other specific drugs, dasatinib

    and nilotinib, that block most forms of the

    mutated enzyme and are given to patients

    who relapse. Trials published last year showthat the drugs work so well as an alterna-

    tive to Gleevec as initial therapy for CML

    patients that they may delay resistance for

    years, Sawyers says.

    However, no cocktail for CML has yet

    been tested as an initial therapy in a clinical

    trial. One reason, Sawyers says, is that the

    cocktail mix is not quite complete. There is

    one important mutant version of the BCR-

    ABL protein, T315I, that no existing drugs

    target. (A promising candidate is in clinical

    trials, though.) Furthermore, patients arent

    that interested in enrolling in a combina-

    tion trial because Gleevec alone works very

    well for most patients, says Gleevec co-

    developer Brian Druker of Oregon Health

    and Science University (OHSU) in Portland.

    And as a researcher, Druker says he finds it

    hard to ask people to take an experimental

    drug as well as Gleevec when only a small

    fraction will likely do any better than they

    would on Gleevec alone. Would I treat 90people for the benefit of 10? Druker asks.

    People are so comfortable with one drug,

    Sawyers says.

    Gleevec has been used with good

    effect to treat another cancer, gastro-

    intestinal stromal tumor (GIST), a

    rare disease usually caused by muta-

    tions in genes called PDFGRA orKIT, says Michael Heinrich of OHSU.

    But resistance mutations can appear

    in the KIT protein. Although a drug

    called sunitinib targets some of them,

    theres no current drug that can patch

    up all the holes, Heinrich says. And

    because GIST patients live a relatively

    long time on Gleevec5 years versus

    15 months on chemotherapyits hard

    to interest companies in testing a cock-

    tail for GIST, he says.

    Resistance is a more urgent prob-

    lem for lung cancer patients treated

    with Iressa and Tarceva (gefitinib and

    erlotinib), the first big success for tar-

    geted therapy after Gleevec. These

    nearly identical drugs block a cell

    receptor called EGFR that transmits

    growth signals. The drugs didnt help

    most patients in trials for non-small

    cell lung cancer, but researchers real-

    ized that they work extremely well on the

    roughly 10% of patients who have an EGFR

    mutation in their tumors (they tend to be

    women, never-smokers, or Asian). Some of

    these patients tumors almost vanish when

    they receive an EGFR inhibitor. However,the average patient develops resistance after

    about a year.

    As with Gleevec for leukemia and GIST,

    the trouble is often that tumor cells appear

    in which the EGFR receptor has a specific

    new mutation (T790M) that prevents the

    drugs from binding well. Companies are still

    moving toward clinical trials of drugs that

    block EGFR proteins with this mutation,

    which about half of all patients develop, says

    Jeffrey Engelman of Massachusetts General

    Hospital (MGH) in Boston. Lung cancer

    cells have another way of evading the drug,

    moreover: They can make more of a differ-ent cell receptor, called MET, that can take

    over for EGFR and maintain the growth sig-

    CEGFR

    Akt

    ERBB3 MET

    p85

    P13Kp110

    P P

    Akt

    ERBB3

    p85

    P13Kp110

    P

    A EGFR

    Akt

    ERBB3

    p85

    P13Kp110

    P P

    B EGFRT790M

    Akt

    ERBB3

    p85

    P13Kp110

    P P

    p85

    P13Kp110

    P

    MET

    P

    2001

    FDA approvesGleevec (imatinib),a targeted drug, forchronic myelog-enous leukemia;Timecalls it amagic bullet.

    Childhood cancer landmark:nearly 80% of those treatedfor acute lymphoblasticleukemia are free of cancerevents for 5 years or more.

    1998

    Nobelist JamesWatson tells TheNew York Timesthatblocking the growthof tumor bloodvessels (antiangiogenesis)can cure cancer in 2 years.

    2003

    NCI Director Andrewvon Eschenbach vowsto eliminatesufferingand deathfrom cancerby 2015.

    2004

    FDA approvesAvastin, an anti-angiogenesisdrug, for coloncancer, withchemotherapy.

    2005

    NIH launches TheCancer GenomeAtlas to cataloggenomic changes intumors.

    Two ways out. (A) The lungcancer drug Tarceva (bluespheres) blocks the EGFRreceptor from transmitting asignal. (B) The T790M muta-tion prevents the drug frombinding. (C) Tumor cells canalso overexpress the METreceptor, which takes overwhen EGFR is blocked.

    >

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    C R E D I T S ( T O P T O

    B O T T O M ) : C O U R T E S Y M E M O R I A L S L O A N K E T T E R I N G C A N C E R C E N T E R ; C O U R T E S Y M A S S A C H U S E T T S G E N E R A L H O S P I T A L ( 2 ) ; J U P I T E R I M A G E S / T H I N K S T O C K

    naling pathway. These escape routes and a

    couple of others are problematic but a man-

    ageable list, says Jeffrey Settleman, who

    left MGH last year for Genentech in South

    San Francisco, California.

    Hoping to close off two escape routesat once, a few companies are running tri-

    als combining an EGFR inhibitor and a

    MET inhibitor. Early results are mixed,

    Engelman says. One problem is that the

    cocktails didnt target the T790M muta-

    tion, says William Pao of Vanderbilt-

    Ingram Cancer Center in Nashville. Pao

    is optimistic about another early clini-

    cal trial, however, that is treating patients

    who became resistant to Tarceva or Iressa

    with a new, more potent EGFR inhibitor

    and an approved EGFR-blocking antibody

    called cetuximab; the combination shrank

    T790M-carrying tumors in mice. Initial

    results are expected this summer.

    New escape routesHow melanoma tumors become resistant to

    the initially powerful PLX4032 drug is more

    complex. Plexxikon began developing the

    drug after Strattons team reported 9 years

    ago that tumors in half of advanced mela-

    noma patients have the same mutation in aprotein called BRAF. This protein is part of

    a key growth signaling pathway. Because

    PLX4032 blocks mutated BRAF and inhib-

    its this pathway only in tumor cells, it can be

    given at high doses (Science, 18 December

    2009, p. 1619). But nobody was surprised,

    says trial co-leader Keith Flaherty of MGH,

    when patients on PLX4032 whose tumorsmelted away eventually relapsed.

    But researchers were surprised to find

    that biopsied tumors from patients who

    developed resistance didnt have mutations

    in the BRAF protein. Instead, several teams

    reported recently that tumor cells appear

    to use three different escape routes. This

    was disappointing, but some also saw good

    news: Two of these forms of resistance func-

    tion in the same wayrestoring the growth

    pathway by activating a downstream protein

    called MEK. This suggests, says David Solit

    of MSKCC, that combining a BRAF inhibi-

    tor and a drug that blocks MEK could block

    both escape routes.

    These studies still dont account

    for the lions share of resistance cases,

    Flaherty says; there is more work to be

    done. But they have inspired GlaxoSmith-

    Kline, which makes a BRAF inhibitor simi-

    lar to PLX4032, to launch a trial combining

    its drug with a MEK inhibitor. This will

    provide proof of concept of the cocktailidea, Sawyers says, within a couple of years.

    Another cocktail combining PLX4032

    with an immunotherapy drug developed

    at MSKCC is also under study (Science,

    22 October 2010, p. 440).

    Cocktails with caveats

    Testing combinations of drugs is not new incancer research. But these cocktails would

    be different because they would be ratio-

    nally designed to block tumor escape

    routes, researchers say. Although research-

    ers are eager to begin, they will need to over-

    come some barriers.

    One is commercial competition. Many

    drugs that target the newly found resistance

    pathways are still in development. Compa-

    nies are loath to test two unapproved drugs

    simultaneously, especially if one comes

    from a business rival. They worry that side

    effects from one product will bloody a

    drug that is safe on its own, Flaherty says.

    People in my line of work are all about try-

    ing to make this happen because the biology

    is so obvious, he says, but drug develop-

    ment is another matter.

    Flaherty and others are encouraged,

    however, by recent examples of compa-

    nies teaming up: In 2009, Merck and Astra-

    Zeneca agreed in a groundbreaking deci-

    sion to test a Merck MEK inhibitor and a

    drug blocking another key pathway, PI3K/

    Akt. Since then, a couple more companies

    have signed such agreements. The motiva-

    tion is not just to overcome resistance butalso to explore an exciting possibility: It has

    become increasingly clear from cell stud-

    ies that pairing two drugs aimed at different

    pathways can result in synergistic effects,

    says D. Gary Gilliland, senior vice president

    and franchise head for oncology at Merck in

    North Wales, Pennsylvania. He also praises

    new draft U.S. Food and Drug Administra-

    tion guidelines that allow for flexibility for

    testing combinations.

    Researchers testing combinations must

    also face the fact that tumors are constantly

    evolving, Engelman notes. His group pub-

    lished a study on non-small cell lung can-cer this week in Science Translational Medi-

    cine(STM) that illustrates this complexity.

    Retargeting.Gleevec co-developer Charles Sawyers, lung cancer researcher Jeffrey Engelman, and mela-

    noma trial co-leader Keith Flaherty are working on ways to overcome acquired resistance to targeted drugs.

    Sawyers Engelman Flaherty

    FDA approvesProvenge, an immunetreatment for meta-static prostate cancer.It extends life about4 months and costs$93,000.

    2011

    PLX4032, atargeted cancerdrug, extendslife in patientswith advancedmelanoma.

    2010

    NationalLung CancerScreeningTrial findsthat helical CT screeningcan reduce cancer deathsamong smokers.

    2009

    James Watson writes thatits time to turn from cancergenetics to understand-ing the chemical reactionswithin cancer cells,or cell metabolism.

    2007-2008

    Breast cancerincidence declines,attributed to betterscreening andreduced use of hor-mone replacementtherapy.

    2006

    FDA approvesGardasil vac-cine to preventHPV infection,which can leadto cervicalcancer.

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    LOFTHENATIONALCANCERINSTITUTE

    103,2(19JANUARY2011)

    THE AFTERNOON JEFF GUSTAFSON LOST HISlife to stomach cancer, a rainbow appearedabove his Arlington, Virginia, hospice.Even if the shimmering arc had led to a

    pot of gold, however, its not clear whetherthe treasure would have covered the costof treating the 48-year-old

    builder, who was known for hiswit and compassion. The billsfor just 4 months of dogged,full-tilt treatment totaled morethan $350,000including

    one drug that cost more than$12,000 per dose.Gustafsons story isnt that

    unusual to experts who trackthe costs of treating cancer inthe United Statesand areincreasingly worried aboutwhere they are headed. Overthe past 3 decades, total U.S.spending on cancer care hasmore than quadrupled, reach-ing $125 billion last year, or5% of the nations medical bill,

    according to a recent estimate. By 2020, itcould grow by as much as 66%, to $207 bil-lion. Multiple forces are driving the spiral:a growing and aging population, more peo-

    ple living longer with cancer, and new per-sonalized, or targeted, therapies that can

    come with sticker-shock prices of $50,000or more per patient.

    New and more costly, however, haventnecessarily meant better. Although tar-geted treatments, which attack a molecu-lar weak spot in the tumors support sys-tem, have helped improve survival rates formany cancers, some extend life for just afew weeks or months (see p. 1542). And the

    prices can be sobering: more than $1.2 mil-lion to extend a lung cancer patients life for1 year in one scenario involving a costly butcommon drug. That example is unusual, butsuch numbers have sparked a growingand

    sometimes feistydebateover how best to calculate the

    benefits of new cancer treat-ments, whether their use willlower or raise per-patientexpenses, and who should

    decide whether using them isworth the cost. The questionis, Are we spending too muchfor too little? says oncolo-gist Antonio Tito Fojo of theU.S. National Cancer Institute(NCI) in Bethesda, Maryland.

    Demographic driversTallying the current andfuture costs of treating can-cer isnt easy. Cancer nowincludes more than 100 dif-

    His team analyzed 37 biopsy samples frompatients with the EGFR mutation who weregiven Iressa or Tarceva and later becameresistant. Although some resistance mutationswere known, others were new, and for 30% of

    the samples, his team could not identify themechanism. Some tumors even morphed intoa different type of lung cancer that requiresan entirely different treatment. In addition,

    biopsies from three patients collected duringthe course of treatment showed that tumorschanged: Some that developed resistancemutations later lost them. Its very, very com-

    plex. Its not fitting into the simple boxes thatweve made until now, Engelman says.

    Cocktail therapy will face another issuethat has not been well explored so far: the riskthat combining two drugsparticularly onesthat target different pathways used by normalcellscan lead to unacceptable side effects.Engelman thinks that for this reason, patientswill be able to tolerate a cocktail for only ashort time. He envisions putting them on asingle drug, then intermittently giving them a

    pulse of a cocktail for several days. As hisSTMstudy suggests, clinicians would need toconstantly biopsy patients and tailor the cock-tail to the mutations in their tumor. This couldstretch responses out to years, Engelman says.

    A lot of this is going to have to be doneby trial and error, Pao agrees. Sawyers andothers point out, however, that such combi-nation therapies developed in the 1960s and70s eventually vanquished most cases ofchildhood leukemia, Hodgkin lymphoma,and testicular cancer.

    Major cancer centers are already rou-tinely genotyping biopsies from patientsthroughout their treatment using proce-dures that are less invasive than surgery,such as collecting a few tumor cells with athick needle. Engelman says this is essen-tial: We cant be afraid to rebiopsy to seewhats going on.

    Cancer researchers acknowledge thatcoming up with cocktails to corner can-cer will be much more difficult than it waswith HIV. Cancer geneticist Bert Vogelstein

    of Johns Hopkins University in Baltimore,Maryland, points out that cancer is differentfrom AIDS: Among other things, tumors varymore from patient to patient than HIV does;the genetic heterogeneity of cancer cells

    within a single patient is orders of magni-tude greater than HIV genotypes in patients,so tumors have a much larger reservoir ofresistance mechanisms that go beyond thosealready uncovered. Unfortunately, weve got

    billions of cancer cells ready to become resis-tant, and it takes 15 years to develop each newdrug, Vogelstein says. Moreover, to wipe outa tumor completely, he and others say, a cock-tail might also have to include a drug that tar-gets stem celllike cells in a tumor that con-tinuously give rise to tumor cells.

    Turning cancer into a manageable dis-ease, however, would be wonderful, Vogel-stein says, if it can be done. Advocates oftargeted therapy think they will get there.Melanoma was completely untreatable18 months ago, says Neal Rosen of MSKCC.Give us a chance. JOCELYN KAISER

    Can Treatment Costs Be Tamed?More patients and the rising costs of new cancer treatments spark debate over how

    much is too muchand who should decide

    NEWS

    5% increase in annual costs,first and last year of care

    2% increase in annual costs

    Population growth only

    Current trends in incidenceand survival, projected

    PROJECTED COSTS OF TOTAL U.S. CANCER CARE, 201020

    1002010 2020

    160

    140

    120

    200

    U.S.

    $(billio

    ns)

    180

    220

    Four scenarios.Experts predict total U.S. spending on cancer care could rise by

    as much as 66% by 2020, depending on shifts in disease incidence and survival,

    and treatment costs.

    2012 Cancer Crusade at 40 Collections Booklet

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    C R E D I T S ( T O P T O

    B O T T O M ) : C O U R T E S Y M O L L Y S I M ; ( G R A P H S O U R C E ) : A

    M A R I O T T O

    E T A L

    J O U R N A L O F T H E N A T I O N A L C A N C E R I N S T I T U T E

    1 0 3

    2 ( 1 9 J A N U A R Y 2 0 1 1 )

    ferent diseases that affect more than 13 mil-lion people in the United States each year,and there is no single source of uniform sta-tistics. To come up with their recent fore-casts, a team led by NCIs Angela Mariotto

    turned to a massive trove of data kept bythe federal governments Medicare healthinsurance program, which now covers some40 million Americans over age 65. Sievingthe data, they were able to extract a roughsnapshot of the costs associated with treatingnearly 1.8 million Medicare patients diag-nosed with cancer between 1975 and 2005.Overall, they examined incidence, survival,and cost trends for 13 cancers in men and 16cancers in women, and estimated costs for

    patients younger than 65.The result, published last January in

    the Journal of the National Cancer Inst i-tute (JNCI), reveals some of the complexdemographic and technological forces thatare pushing costs down, even as the over-all total rises. Earlier studies, for instance,have suggested that average per-patientcosts for many cancers have declinedslightly in recent years, largely becauseoutpatient treatment has often replacedmore expensive in-hospital stays. TheJNCIstudy, however, shows that those savingsare being swamped, in part, by the grow-ing number of older people, who are morelikely to get cancer. Medicare predicts itsrolls will nearly double, to 70 million peo-

    ple, by 2020. And theJNCIstudy forecaststhat some 16% of these older Americansabout 11.4 million peoplewill have can-cer, up from 8 million today. Another 6.6million younger people will also be livingwith cancer. Even if all other trendssuchas the cost of individual treatmentdontchange, they estimate that those demo-graphic changes alone will push nationalcancer care costs up 27% by 2020.

    Ironically, another factor driving up costsis that people are now surviving cancers thatmight have killed them quickly decades ago.

    Some of the largest projected cost increases,for instance, are linked to providing con-tinuing care for people living with breastand prostate cancer, a group expected togrow by as much as 41%, to nearly 8 mil-lion in 2020. It will cost some $18 billionto provide continuing care for these patients,the team estimates, some 30% to 40% morethan current costs.

    The study notes, however, that spendingtends to follow a u-shaped curve over the

    period of cancer treatment, with the highestcosts coming just after diagnosis and in the

    last year of life, but with relatively less spentin between. For instance, men under 65 withstomach cancersuch as Gustafsonspentan average of $94,000 per year on initialcare in 2010 and $161,000 in the last year oflife, but just $4200 per year for continuingcare. In part, thats because stomach can-cer can kill quickly, and for those who dontdie early, end-stage costs can be very high.But the numbers also reflect the fact that

    younger patients typically get more aggres-siveand more costlycare than olderones, perhaps because society perceives agreater potential benefit to extending thelife of a younger person. Patients under 65now make up about 40% of all cancer cases,the JNCI team estimated, and typicallyreceive care that costs about 35% more thanthat of older patients.

    Worth the cost?

    T he i m pend i ngdemographical lydriven increases areinevitable, the

    authors note. Harderto pin down, how-ever, is the futureimpact of techno-logical changes that,overall, have beenrapidly pushing upcosts. In particular,chemotherapy priceshave been esca-lating faster thanother medical costs,largely because ofthe introduction oftargeted drugs thatcome with price tagshigher than those of

    many older compounds. Although studiessuggest that cancer drugs typically accountfor less than 15% of a patients total treat-ment costs, experts say that is changing.For instance, an increasingly used drugcalled bevacizumabsold under the nameAvastincan cost from $30,000 to $62,000

    per patient per course of treatment, depend-ing on the targeted cancer, according toestimates compiled by NCIs Fojo and col-

    leagues. In contrast, some drugs used at thebeginning of the war on cancer in 1971 costjust a few hundred dollars per patient.

    Part of the problem, Fojo and his col-leagues have argued in a pair of provocative

    papers, is that the new, costlier drugs oftenfail to improve survival appreciably. Theydont work for all patients, and when theydo work, the effect is often limited. To high-light such problems, in both a 2009JNCI

    paper and a 2010 paper published inClinicalCancer Research, Fojos team focused on abreakthrough treatment that was toutedat a major annual cancer research meeting

    in 2008. A study had shown that non-smallcell lung cancer patients treated with cetux-imab (sold as Erbitux) lived, on average,1.2 months longer than those receiving stan-dard treatments. One scenario, which calledfor using cetuximab for 18 weeks at a costof $40,000, translated to a cost of $496,000for one extra quality-adjusted life year(QALY). In contrast, they noted, kidneydialysis, a lifesaving technology Medicaremade universally available in 1972, costs$129,090 per QALY.

    Another scenario, using bevacizumab

    Number of people living with cancer

    0 2 4 6 8 10 12Millions

    2020

    2010

    Younger than 65

    65 and older

    U.S. CANCER PREVALENCE

    Surviving.One of the major drivers of increasedcosts is that more people are living longer withcancer.

    One life. After standard treatments failed to stop Jeff Gustafsons stomach can-cer, his insurer approved the experimental use of one expensive drug, but itfailed to extend his life.

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    103,2(19JANUARY2

    011)

    at a cost of $30,000, translated to a QALYcost of $1.2 million. And such drugs are notalone among treatments offering marginal

    benefit at very high cost, they wrote: Morethan 90% of the cancer drugs approved by

    the U.S. Food and Drug Administration(FDA) in the previous 4 years had cost morethan $20,000 for 12-week treatments. Wemust stop deluding ourselves into thinkingthat prescribing expensive chemothera-

    pies and tests are an aberration, a temporarydeviation from an otherwise reasonable costtrajectory, they concluded.

    Along with their critique, Fojo and his col-leagues offer solutions. They argue that Medi-care and other U.S. insurers, for instance,shouldnt pay for drugs that would cost morethan $129,090 per QALY. That would stillmake the United States somewhat more gen-erous than other nations, including the UnitedKingdom, Australia, and Canada, whose gov-ernment-run health services routinely rejectthe use of new cancer drugs because theycant meet certain QALYcosts. Fojos group alsosays that drug compa-nies shouldnt fund tri-als designed to detectsurvival improvementsof fewer than 2 monthsunless the drug will costless than $20,000 andshould even considerreducing charges if adrug doesnt work in a

    particular patient. Doc-tors should use costlydrugs only in the subsetof patients proven to gain

    benef it, they say, andavoid using new drugsoff-label, i.e., to treatcancers other than thosefor which the drug wasapproved by FDA. Suchsteps, Fojo says, would

    focus our attention on using drugs that deliverproven benef its until researchers can f indbetter ways to efficiently develop and use tar-geted therapies.

    Some disagree sharply. Such ideas arebased on flawed premises, Joshua Cohenand William Looney of Tufts UniversitySchool of Medicine in Boston argue in a

    November 2010 response published inNatureBiotechnology. Using QALY calculationsto rule out therapy, for instance, is a biased,blunt instrument that ends up denyingdrugs to patients who need them, the authors

    say. They view this as a radically egalitar-ian approach that forces insurers to choose

    between drugs they can afford for all, asopposed to those they will fund for no one.They also argue that preventing doctors from

    using drugs off-label would hobble the provenpractice of freeing doctors to find promisingnew uses for existing drugs. And it wouldstand in stark contrast with clinical practice.Studies, for instance, suggest that up to 75%of anticancer drugs are already used off-label.And price controls would, they argue, ulti-mately cause investors to reduce funding forresearch into new drugs because they couldnt

    be sure of recouping their costs. There is onething the two sides do agree on: Better, moreorganized studies could help steer the rightdrugs to the right patients. Better genetic tests,for instance, could identify patients unlikelyto benefit from a particular drug. They couldalso help researchers design smaller, lesscostly trials that better identify smaller groupsof patients likely to respond; current trials

    often wash out these drugs because the ben-efits seem statistically negligible.Another idea gaining ground is cover-

    age with evidence development (CED),in which insurers link payments for certaindrugs to efforts to collect data on compara-tive effectiveness, with the aim of discontinu-ing coverage for drugs that dont work. Cohenand Looney even suggest that CED could becombined with risk-sharing arrangements,in which insurers and manufacturers agreeto link a drugs price to its performance. U.S.Medicare managers have already launched

    a number of CED experiments, and the newhealth care reform law authorizes extensivenew efforts to compare the effectiveness ofdifferent medical treatments, including cancerdrugs. In 2014, it also requires private insur-

    ers to cover the routine costs of enrolling can-cer patients in clinical trials, removing a major

    barrier to their participation.

    Agonizing decisionsAlthough such studies didnt help Gustafson,his treatment did reflect both the challengeand opportunity inherent in efforts to tampdown the costs of cancer care. His oncolo-gists, for instance, talked with him and hiswife, Molly Sim, about the costs they werelikely to encounter. Thats something that arecent statement from the American Societyof Clinical Oncologists says needs to happenmore often, given how many families exhausttheir savings fighting cancer. We were for-tunate, we had really good insurance, saysSim, who ended up paying less than $6000

    out of pocket.Gustafsons doctors

    also gave him genetictests to determinewhether he should begiven one expensive but

    promising drug; unfor-tunately, the tests indi-cated that he wouldnt

    benefit. But when hefailed to respond tostandard treatments,they proposed a last-ditch strategy: Sim suc-cessfully appealed toher insurer to pay foroff-label use of Avas-tin at a cost of nearly$40,000. Gustafsondied in November 2009,

    before he could com-plete the treatment.

    Its a story that

    Fojowho urges caution in using expensivedrugssays he knows all too well. In theabstract, you say using these marginal drugsis crazy, he said recently, shortly after com-ing off his rounds treating cancer patients.But when you have the patient in front ofyou, and nothing else is working, well, Imight try the crazy thing, too. We used to doit with cheap drugs, but now we are doing itwith really expensive drugs. The problem isthey really dont work any better.

    DAVID MALAKOFF

    David Malakoff is a writer in Alexandria, Virginia.

    Last yearContinuingInitial

    THE PRICE OF TREATMENT

    0

    50,000

    100,000

    150,000

    200,000

    250,000

    300,000

    350,000

    (under65)

    (65 andover)

    Female-Breast

    Annualizedmeannetcostsin2010dollars

    (under65)

    (65 andover)

    Female-Brain

    (under65)

    (65 andover)

    Male-Stomach

    (under65)

    (65 andover)

    Male-Lung

    (under65)

    (65 andover)

    Female-Pancreas

    Male-Pancreas

    Varying costs. The average annual cost of treatment can vary, depending on the patients age andcancer type. In general, costs are higher just after initial diagnosis and in the last year of life.

    2012 Cancer Crusade at 40 Collections Booklet

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    BOSTONIn one of his PowerPoint presen-tations, Lawrence Shulman has a series of

    photographs that are hard to forget. One

    shows Tushime, an 11-year-old girl in

    Rwanda suffering from rhabdomyosarcoma,

    a rare cancer of the muscles. A tumor resem-

    bling a cauliflower is growing out of her

    right cheek.

    The good news comes in Shulmans

    next three slides. Over a 10-week treatment

    course with drugs donated by a U.S. pro-gram, the mass started to shrink until even-

    tually it could be removed surgically. The

    last picture shows Tushime, standing with

    her happy family anddespite a somewhat

    lopsided facelooking healthy.

    Shulman is chief medical officer at the

    Dana-Farber Cancer Institute here, which

    is affiliated with Harvard Medical School

    (HMS), and to him the pictures carry a pow-

    erful message: Given that treatments are

    readily available, how can you not treat a

    child suffering from a very curable cancer?

    Its a message that is beginning to be

    heard. Global health has gained in promi-

    nence on political agendas in recent years, but

    attention has been overwhelmingly focused

    on infectious diseases. Now, some

    argue, its time to start closing anequally unconscionable gap between

    rich and poor nations in cancer pre-

    vention, diagnosis, and treatment.

    The numbers speak volumes. A

    child suffering from leukemia in

    Western Europe has an 85% chance

    of survival; in the 25 poorest coun-

    tries in the world, its just over 10%.

    For a man with testicular cancer,

    the numbers are about 95% and just

    over 40%. Estimates suggest that

    less than 5% of the worlds cancer

    resources are spent in the develop-

    ing world. In many countries, even

    painkil lers are hard or impossible

    to come bya violation of human

    rights, Shulman says.

    In a bid to change that, oncolo-

    gists at topflight centers in the United

    States and Europe are now taking time out

    to help improve cancer care in low- and

    middle-income countries. In an article last

    month, World Health Organization Director-

    General Margaret Chan said that cancer

    needs to be acknowledged as a vital part of

    the global health agenda. Cancer will also

    feature on the agenda at the United Nations

    High-level Meeting on Non-Communicable

    Diseases in September in New York City.

    Shulman and Harvard School of Public

    Health Dean Julio Frenk co-chair the new

    Global Task Force on Expanded Access

    to Cancer Care and Control in Develop-

    ing Countries (GTF.CCC), which aims to

    move cancer up on the global

    priori ties list . The group

    which combines expertise in

    cancer, global health, eco-

    nomics, finance, and policy

    published a 10-page cal l to

    action last year inThe Lancet

    and is now working on a col-

    lection of papers for the same

    journal that details what needs

    to be done.

    The obstacles are major, and

    some people question whether

    battling cancer is the wisest use

    of scarce global-health money.

    Similar doubts were once raised

    about infectious diseases,

    says HMS physician and GTF.

    CCC member Paul Farmer:

    A Push to Fight Cancer in theDeveloping WorldCancer and other chronic diseases have received little attention from global healthadvocates. Thats beginning to change

    NEWS

    Ratioofmortality

    toincidence

    Low

    Country incomeLower middle Upper middle High

    THE CANCER SURVIVAL GAP

    0.0

    0.1

    0.2

    0.3

    0.4

    0.5

    0.6

    0.7

    0.8

    Breast

    Prostate

    Colorectal

    Cervix uteri

    Non-Hodgkin lymphoma

    Thyroid

    Testicular

    Hodgkin lymphomaLeukemia (0-14 years of age)

    Life and death.For many cancers, the case fatality rate (of whichthe ratio of mortality to incidence is a proxy) is much higher inpoor countries than in rich countries.

    Prevention.Women wait to be screenedfor cervical cancer at a Partners In Healthclinic in Rwanda.

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    15 years ago people questioned the logistical

    and financial feasibility of treating HIV and

    multidrug-resistant tuberculosis (TB) in poor

    countries. Yet as Farmer points out, both are

    now being addressed on a large scale. Great

    strides have been made recently in a range ofother tropical diseases, too. So why cant it be

    done for cancer?

    A more difficult jobCancer takes a markedly different toll

    depending on the country. Lung cancer, a

    major killer in the West, is rarer in Africa,

    where fewer people smoke and life expec-

    tancy is shorter. Several virus-related can-cers, on the other hand, are much more

    prevalent in poor countries. Cervical can-

    cer, caused by the human papillomavirus

    (HPV), has become quite rare in rich coun-

    tries thanks to screening with Pap smears.

    But it is common in the developing world,

    where 93% of the estimated 273,000 annual

    deaths from this disease occur.Taken together, however, the burden

    of cancer is still lower in the poorer coun-

    CREDIT:KENTDAYTON/HSPH/PRESIDENTANDFELLOWSOFHARVARDCOLLEGE

    SUDBURY, MASSACHUSETTSYou can ask me absolutely anything,says Felicia Knauland shes serious. Knaul, a health economist atHarvard Medical School in Boston, doesnt mind telling in detail howbreast cancer changed her marriage, her family, and her career. In hermission to shatter taboos around the disease and improve the lives ofpatients in developing countries, her professional and private lives havebecome one.

    Knaul is one half of a Mexican-Canadian power couple that aims toend the neglect of cancer as a disease of the poorand will succeed,if anyone can, say colleagues. The other half is Julio Frenk, the formerhealth minister of Mexico and a much admired reformer, who is now deanof the Harvard School of Public Health (HSPH).

    Knaul, born and raised in Toronto, says she has always had a keeninterest in poverty and health. She lived in Bogot for 2 years in the early90s, working on a project for street children and helping the Colom-bian government reform its health system. After meeting Frenk, whocomes from a family of doctors, she moved to Mexico; she now considersit home. She joined the Mexican Health Foundation in Mexico City, whereshe still leads a research group. When Frenk became minister in VicenteFoxs Cabinet in 2000, she worked pro bono to help him push through amajor reform that extended basic health coverage to the countrys poor-est and took effect in 2003.

    That didnt prepare her for her own terrifying brush with illness. InOctober 2007, a technician in Cuernavaca discovered a lump in Knaulsleft breast. It was malignant. After weeks of anguish, she underwent amastectomy and started on chemotherapy. Knaul says she was lucky. Shehad access to the best doctors in Mexico, andbecause her husbandtook a job at the Bill and Melinda Gates Foundation after he left thegovernment in 2006she even had insurance coverage in the UnitedStates. Knaul used it to seek additional treatment at the Seattle CancerCare Alliance. She now rates her 5-year survival chance at between 85%and 90%.

    Thats much more than most Mexican women with breast cancer can

    expect. Coverage for breast cancer treatment was added to Frenks insur-ance plan for the poorest in 2007; in reality, some women still dont gettreatment, for instance, if they live far from a hospital. Early diagnosis israre. Many women forgo mammograms even where they are available,Knaul says, and a culture of machismo often leads men to abandon theirwives or girlfriends if they lose a breast. Knaul recalls a woman recentlydiagnosed with breast cancer at one public event saying: A woman with-out breasts is ugly. I dont want to be ugly.

    Knaul decided to start a programit is now a not-for-profit groupcalled Cncer de Mama: Tmatelo a Pecho(Breast Cancer: Take It to Heart)that aims to raise awareness of and improve access to prevention, earlydetection, and treatment. Sharing her own story might help other women,

    she thought, so she wrotea frank book about herexperience. The resultingTV interviews with her andFrenk made waves.

    She and Frenk took thecampaign to the next levelafter he was appointed deanof HSPH in 2008 and shebecame director of the Har-vard Global Equity Initiative,a research program foundedby Nobel laureateAmartya Sen. Shehad the idea to starta global task force toexpand cancer care inpoor countries. Frenknow co-chairs it withLawrence Shulman,chief medical officer ofthe Dana-Farber CancerInstitute in Boston. Many of their well-placed friends signed on: formerUNAIDS chief Peter Piot, director of the London School of Hygiene andTropical Medicine; Columbia University economist and poverty warrior Jef-frey Sachs; and CNN chief medical correspondent Sanjay Gupta. They havereally brought this to the doorstep of many people at high levels, says Car-los Rodriguez, a pediatric oncologist at Dana-Farber.

    The task force is now collecting evidence on how cancer care in devel-oping countries can be improved, she says. To do so, she has helpedrecruit a series of papers for publication in The Lancet(see main text,p. 1548). Her own story, she realizes, is atypical for a woman in Mexico. Still,it reinforces her message, she says: When you say at a meeting, I have

    cancer, people listen in a way that happens with very few other diseases.Her frankness is part of her strategy. Mexican couples thanking herfor her book will sometimes mention chapter 18, she says, in which shediscusses how the chemotherapy-induced menopause shut down her sexlife. At her art-filled house 30 kilometers west of Boston, Knaul also dis-cussed, matter-of-factly, why, in her case, reconstructive surgery was notsuccessful. (The implant dropped a couple of inches, she says, becauseof a lack of tissue to hold it up.)

    Her own marriage didnt suffer, she addson the contrary, the dis-ease brought the two closer, and for the book, Frenk contributed frag-ments of four love letters written when she was i ll. As Knaul wrote, I hadmy boyfriend back. M.E.

    In sickness and in health.

    Felicia Knaulwith hus-

    band, Julio Frenkwroteabout her disease.

    ,f

    I

    Making Her Life an Open Book to Promote Expanded Care

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    C R E D I T T H I N K S T O C K

    T A B L E S O U R C E

    L

    S H U L M A N

    tries, which is one reason why it has failedto get global health policymakers full atten-tion. Unfortunately, the developing world iscatching up. In many middle-income coun-tries, life expectancy is increasing, and obe-

    sity and smoking are on the rise, all of whichlead to more cases of cancer. Women arehaving their children later in life and breast-feeding for a shorter time, which increasestheir risk of breast cancer.

    And treating cancer is much more dif-ficult than treating malaria or TB, Shulmansays. Diagnosis is complex, requiring com-

    petently staffed and well-equipped pathol-ogy labs. Physicians in many countries are

    in short supply; oncologists are extremelyscarce. There arent enough surgeons oroperating rooms; 30 countrieshalf ofthem in Africadont have a single radia-

    tion therapy machine.Still, in The Lancetpaper, Shulman andcolleagues at the task force identified a listof cancers for which a lot can be done evenin places with poor infrastructure (see table).These measures include battling tobaccousewhich increases the risk of variouscancers as well as cardiovascular diseasevaccinating against HPV and hepatitis B,improving early detection, treating eminentlycurable tumors such as Tushimes sarcomaand childhood leukemia, and improving life-extending treatment for cancers like Kaposi

    sarcoma, an HIV-related cancer of the skin.The price of drugs is not insurmount-

    able, says HMS health economist and breastcancer advocate Felicia Knaul, who runsthe task forces secretariat (see sidebar,

    p. 1549). Of a list of 27 essential cancerdrugs compiled by the task force, 24 are off-

    patent, and prices could be brought downfurther through negotiations with the phar-maceutical industry, Knaul says. A recentstudy showed that drugs needed to treat acase of Burkitts lymphomaa cancer that

    primarily affects African children and isassociated with the Epstein-Barr viruscost less than $50, a bargain in terms of life

    years saved per dollar.The biggest challenges in combat-

    ing canceras for other diseasesareto build up expertise and infrastructureand extend care to the poorest people.Some private groups are interveningdirectly. For the past 18 years, pediat-ric oncologists at St. Jude ChildrensResearch Hospital in Memphis, Ten-nessee, which sets aside about 1% of itsannual budget for global health, have

    pioneered so-called twinning programsthat provide assistance to hospitals in20 countries to improve cancer care forchildren. Several other pediatric hospi-tals have followed suit. The impact isreal: In El Salvador, where the twin-

    ning started, the 5-year survival rate forchildren with acute lymphoblastic leu-kemia went from 10% to 60%, and isstill climbing.

    Partners In Health (PIH), bestknown for its pioneering work fight-ing AIDS and TB in Haiti, has longtreated cancer patients as well, saysco-founder and director Farmer: Theyoften go from one clinic to the next,

    seeking care. But PIH is also working withgovernments to strengthen their health sys-temsand expanding cancer care is a keygoal. The Rwandan government is very keen

    on it, Farmer says.Currently, the PIH network still relies onBostons medical infrastructure for backup.Brigham and Womens Hospitals pathol-ogy department examines specimens toidentify tumors, for instance, an indispens-able part of diagnosis. (Shulman himselfhas returned from Malawi with a suitcasefull of specimens. Fortunately, nobody atcustoms checked, he says.) But the plan isto develop pathology expertise and infra-structure locally. Brigham and Womens hasdonated equipment for Haiti and Rwanda,

    and its chief technologist is training staffmembers. Were totally committed to doingthis, Shulman says.

    Going horizontal

    Expanding cancer care will cost money. Takethe new HPV vaccines. So far they have beenintroduced in wealthy countries, but can-cer experts say they would prevent far morecases of cervical cancer in poor countries,where Pap smears are seldom done. Theircost, more than $300 per vaccinated teenagegirl in the West, has been a barrier to theirintroduction in the developing world.

    But with the economy in a global dip, itshard to see where the money will come from.Cancer is competing for attention with theinfectious diseases, which have seen a majorincrease in program support over the pastdecade but are still underfunded. Meanwhile,other diseases such as diabetes and mentalillness are vying for attention as well. Men-tal health advocates are already disappointedthat they wont have a seat at the SeptemberU.N. meeting on noncommunicable diseases,where the task force is trying to make cancerwell-represented. But its not one or the other,Farmer argues: We have to get away from thewhole notion of choosing between diseases.

    Gene Bukhman, head of Harvards Pro-gram in Global Non-communicable Diseaseand Social Change, advocates building up

    health systems broadly so that they can dealwith not just cancer but also diabetes, heartdisease, and a variety of other chronic ail-ments that each make up a small percentageof the disease burden. But this approachsometimes dubbed horizontal as opposedto vertical disease-specific programsisnt

    particularly popular. The Bill and MelindaGates Foundation is spending its billionsmostly vertically, focusing on specific dis-eases. Likewise, many advocacy groups wantto extend their worksay, on breast or prostatecancerto the worlds poor, but theyre lessinterested in helping fledgling health systems.

    Farmer, too, wants to channel the enthu-siasm generated by single diseases into helpfor a better health system: The breast canceradvocate needs to see that without a properhealth system were never going to get earlydetection or good treatment. Emotionalappeals can help, Bukhman says, and that iswhere Tushimes pictures come in. I dontthink weve said this enough. When you seesomeone dying needlessly of cancer, it is anobscene inequalityno different from see-ing someone die from TB or HIV.

    MARTIN ENSERINK

    AREAS OF OPPORTUNITY

    Here are some cancer types for which expertssay major progress could be made in developingcountries:

    Curable with early detection and treatment

    Breast cancer Cervical cancer

    Curable with inexpensive chemotherapy

    Non-Hodgkin lymphoma Hodgkin lymphoma Testicular cancer Sarcoma in children Acute lymphoblastic leukemia in children

    Palliation with systemic treatment

    Advanced breast cancer Kaposi sarcoma

    Preventable

    Tobacco-related: lung cancer, head andneck cancer, bladder cancer

    Vaccine-preventable: cervical cancer(HPV) and liver cancer (hepatitis B)

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    WW.PETERHOEY.COM;(TABLESOURCE)PUBMED

    YOUVE HEARD OF CHARLES DARWIN, BUTdoyou know of his elder brother, Erasmus?He was a physician, inventor, and philoso-

    pher of some repute. Familiar with Cassandra

    Austen, the amateur painter and Janes sister?

    Probably not. Famous brothers and sisters

    often overshadow their siblings.

    The same thing happens in molecular

    families. Take p53, the tumor-suppressor

    protein that was named Sciences Molecule

    of the Year in 1993 and has been dubbed

    guardian of the genome. Few nonspe-

    cialists know that the celebrated p53 is

    closely related to two other proteins, p63

    and p73. Yet these unheralded siblings are

    grabbing the attention of cancer biologists.

    New research suggests that p63 and p73 are

    fierce cancer killers that deserve equal bill-

    ing with p53. Instead of a single genome

    protector, theres a family of guardians,

    says cancer biologist Elsa Flores of M. D.

    Anderson Cancer Center in Houston, Texas.

    Because efforts to exploit p53 in can-

    cer therapies havent yet paid off, some

    researchers are now looking to p73 and p63

    as alternative tumor treatments. Research-

    ers have shrunk or prevented tumors in ani-

    mals by targeting p73, and the first clini-

    cal trialsattempting to use p73 to combat

    a hard-to-treat type of breast cancerhave

    already started. It would be very attrac-

    tive to find a way to activate these proteins

    in people with tumors, says cancer biologist

    Alexander Zaika of Vanderbilt University

    Medical Center (VUMC) in Nashville. Strate-

    gies that capitalize on the tumor-fighting capa-

    bility of the p53 family belong in the arma-

    mentarium against cancer, adds molecular

    oncologist Wafik El-Deiry of the Penn State

    Hershey Cancer Institute in Pennsylvania.

    p53, the hard target

    When a cell suffers DNA damage that can

    lead to uncontrolled growth, p53 comes

    to the rescue. The p53 protein can trig-

    ger DNA repair, stop the dodgy cell from

    dividing, or, when the damage is grievous,

    prompt it to commit suicide. Because p53

    is so potent, cells normally keep levels of

    the protein low. Spurring cancer cells to

    produce more protein, the argument goes,

    could prompt tumors to self-destruct. p53

    is a g reat therapeutic target, says cancer

    biologist Kevin Ryan of the Beatson Insti-

    tute for Cancer Research in Glasgow, U.K.

    Its involvement in tumor suppression is

    without question.

    Scientists are pursuing a number of

    strategies to enlist p53 in the cancer fight

    (Science, 2 March 2007, p. 1211). They

    have completed or are running several clini-

    cal trials for gene therapy approaches, which

    involve introducing extra copies of the p53

    gene into cancer cells. Researchers at six

    institutions in the United States and the

    United Kingdom have also begun safety tri-

    als on a compound, developed by the phar-

    maceutical company Roche, that hikes p53

    levels in cells by impeding the proteins nat-

    ural recycling.

    So far, however, no p53-based treat-

    ments have been approved for clinical use

    in the United States. The practical difficul-ties are formidable. For one thing, thanks to

    a variety of mutations in p53s gene, more

    than half of all tumors

    dont carry a working

    version of the protein.

    Some harbor misshapen

    mutants that are inert or

    that turn traitor and sub-

    vert antitumor defenses.

    Even when cancer cells

    have a functional form of

    p53, they often neutralize

    it, for example, by overproducing enzymes

    that prompt the proteins destruction.

    Attacking many kinds of tumors through

    p53 will require pharmacological feats

    restoring the gene or reshaping the mal-

    formed proteinthat are tougher than the

    standard tactic of blocking a molecules

    unwanted function. Many of us appreci-

    ated it [p53] would be difficult to target,

    says cancer biologist Leif Ellisen of Harvard

    Medical School (HMS) in Boston. Throw-

    ing a wrench into the system is much easier

    than fixing the system. Yet many research-

    ers remain confident that they will eventu-

    ally overcome these obstacles. My personal

    bet is still on p53, says cancer biologist

    Anna Mandinova, also of HMS. But in the

    meantime, researchers are looking at other

    options, namely, p63 and p73.

    Band of molecular brothers

    Scientists discovered the p53 protein in

    1979 but didnt recognize its importance for

    cancer until 10 years later. In 1997, biolo-

    gists identified p73 as a molecular relative,

    after discovering a DNA sequence closelyresembling the gene for p53. That came

    as a bit of a surprise, says cancer biologist

    Gerry Melino of the University of Rome

    Tor Vergata in Italy. Nobody expected

    a protein so close to p53. Yet researchers

    reported another relative, p63, the next year.

    Although p53 was the first family member

    discovered, p63 and p73 are the older siblings,

    evolutionarily speaking. Comparisons of

    their genes suggest that p53 evolved from the

    ancestral version of p63 and p73 more than

    450 million years ago. These elders have a

    range of responsibilities. Unlike p53, p63 and

    p73 are essential during embryonic develop-ment. Shaping limbs and giving the skin its

    layered structure are among p63s tasks in

    an embryo. Formation of

    brain regions such as the

    hippocampus and cor-

    tex depends on p73, as

    does maturation of the

    immune system. Both

    proteins are also neces-

    sary for female fertility.

    For cancer research-

    ers, p63 and p73 have

    Brothers in Arms Against CancerCancer researchers are trying to harness siblings of p53, the famous tumor-blocking protein

    NEWS

    Total PubMed Citations

    p53

    56,939

    p63

    2149

    p73

    1541

    2012 Cancer Crusade at 40 Collections Booklet

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    a big advantage over their sibling: Their

    genes are almost never mutated in or lost

    from cancer cells. So p63 and p73 could in

    theory take over for p53 in almost all can-

    cers, and researchers wouldnt have to fret

    about restoring a lost gene or reshaping a

    distorted protein.

    That strategy will work, of course, only if

    p73 and p63 are tumor suppressors like their

    brother. But that turned out to be surpris-

    ingly tough to confirm. A standard experi-

    ment for gauging a molecules relevance

    to cancerdeleting its gene from mice

    didnt clarify the issue. Whereas mice miss-

    ing p53 live to adulthood and are beset by

    tumors, mice lacking p63 or p73 die young

    from other causes, revealing little about their

    cancer susceptibility. Complicating the mat-

    ter, although some studies found that levelsof p73 or p63 fell in cancer cells, suggesting

    that the proteins are antitumor, other work

    indicated that their levels soared, implying

    that they foster abnormal growth.

    The solution to that apparent contra-

    diction may lie in the discovery more than

    10 years ago that cells dont manufacture

    just one kind of each protein. They can fash-

    ion at least 12 variants, or isoforms, of the

    p73 protein, and at least eight isoforms of

    the p63 protein. Scientists divide these vari-

    eties into the longer, or TA, isoforms and the

    shorter, or N, isoforms. In 2008, Melino,

    molecular geneticist Tak Mak of the Univer-sity of Toronto in Canada, and colleagues

    engineered mice that lack all of the TA iso-

    forms of p73 but retain the N versions.

    The mice were prone to cancer, though they

    werent as vulnerable as rodents lacking

    p53. The TA isoform-deficient mice really

    convinced people that these genes are act-

    ing as tumor suppressors, says Flores.

    Researchers now hypothesize that in can-

    cer, TA isoforms are generally good guys,

    suppressing unchecked cell growth. The N

    isoforms, for the most part, are bad guys.

    They can latch on to and disable p53 and

    the good TA isoforms, thus aiding cancer.For example, cancer biologist Alea Mills

    of Cold Spring Harbor Laboratory in New

    York and colleagues reported in February in

    Cell Stem Cellthat a common N isoform

    of p63 spurs the growth of skin tumors.

    Taking on tumorsp63 and p73 battle cancer in several ways.

    Like their famous brother, the proteins cull

    cells that carry potentially cancer-causing

    DNA damage, activating their apoptotic, or

    cell suicide, pathways. Fortuitously, some

    chemotherapy already takes advantage of

    this ability, causing DNA damage that spurs

    p63 or p73 to kill tumor cells.Recent studies suggest that p63 also reins

    in metastasis, the migration of tumor cells to

    a new location in the body; thats what usu-

    ally kills cancer patients. In 2009 in Cell, a

    team led by Stefano Piccolo of the Univer-

    sity of Padua School of Medicine in Italy

    revealed that some mutant forms of p53

    found in cancer cells prevent p63 from acti-

    vating two genes that curtail metastasis. And

    last fall, in a study inNature, Flores and col-

    leagues showed that the TA isoforms of p63

    curb metastasis through another mechanism:

    boosting levels of microRNAs, RNA snip-

    pets that turn down gene activity. The teamdiscovered that p63s TA isoforms increase

    production of Dicer, an enzyme that snips

    and activates inert microRNAs. The isoforms

    also raise levels of a specific microRNA,

    miR-130b, that prevents cells from mov-

    ing on. p63 may be the master regulator of

    metastasis, says Flores, and activating it

    might increase levels of several metastasis-

    halting microRNAs by flipping on Dicer.

    The big question is whether drug design-

    ers can capture p63s and p73s cancer-

    quelling talents. The research directed at

    this goal isnt as intense or advanced as the

    work on p53, but scientists can claim someencouraging findings.

    One therapeutic strategy attempts to

    reduce sibling rivalry in the p53 fam-

    ily. The mutant p53s found in cancer cells

    often latch onto and neutralize p63 and p73.

    Three years ago, a research group from the

    Cleveland Clinic in Ohio screened more

    than 46,000 compounds and pinpointed

    one, named RETRA, that in test tubes

    breaks mutant p53s embrace of p73. To

    test whether freeing p73 destroys tumors,

    the researchers then transplanted human

    cancer cells into mice and

    administered RETRA. The

    treatment cut the number

    of tumors that sprouted in

    the animals, the scientists

    revealed in the Proceed-

    ings of the National Acad-

    emy of Sciences.

    To liberate p73 from a

    different inhibitor that is

    abundant in cancer cells,

    one known as iASPP, Ryan

    and colleagues ironically

    turned to p53 for inspi-

    ration. They developed a

    snippet of p53, just 37 of

    its nearly 400 amino acids, that in the test

    tube separates p73 from iASPP. Dosing can-

    cer-ridden mice with the snippet, known as37AA, shrank the rodents tumors, the team

    reported in The Journal of Clinical Investi-

    gationin 2007.

    RETRAs effects were fairly weak, and

    37AA was fragile, so neither is likely to

    become a drug. But the importance of stud-

    ies like these, says El-Deiry, is that they

    show its possible to uncover compounds that

    rouse p53s siblings to attack cancer cells.

    Scientists are hunting for other molecules

    that might spur p73 and p63 into action and

    that could make effective drugs. El-Deirys

    group, for example, is in the middle of a proj-

    ect to screen thousands of small moleculestheyve assessed more than 70,000 so farin

    hopes of finding ones that switch on genes in

    the p53 pathway. Some of the candidates, he

    says, appear to work by activating p73.

    At least one group has started clini-

    cal trials. Medical oncologist Ingrid Mayer

    and cancer biologist Jennifer Pietenpol

    of VUMC are targeting a form of breast

    cancerknown as triple-negative because

    the tumor cells lack three key receptor pro-

    teinsthat defies standard treatments such

    as tamoxifen and Herceptin. The tumor cells

    harbor large quantities of the N isoforms of

    p63, which the researchers suspect preventp73 from killing the cells. Along with stan-

    dard chemotherapy, patients will receive an

    existing drug, everolimus, that boosts p73

    levels by inhibiting a p73 blocker called

    mTOR. The goal is to overcome p63s inter-

    ference and enable p73 to kill the tumor cells.

    Its too late for Erasmus Darwin to match

    his brothers fame. But these clinical trials

    and the surge of research on p63 and p73

    suggest that the proteins are finally stepping

    out of the shadow of their famous sibling.

    MITCH LESLIE

    On the attack.Researchers are testing antitumor compounds that rely

    on p73.

    TARGETING P73

    Drug candidate Mechanism Results

    37AA Disengages p73 Shrinks tumorsfrom inhibitor in mice

    NSC176327 Boosts p73 Kills cancer cellsproduction in culture

    Antisense Curtailsproduction Curbs growth ofgapmers of p73sN isoforms melanoma tumors

    in mice

    Everolimus Increases p73 levels Trials in progress

    RETRA Separates p73 from Impedes tumormutant p53 formation in mice

    14 SCIENCE www.sciencemag.org

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    REVIEW

    Exploring the Genomes of Cancer

    Cells: Progress and PromiseMichael R. Stratton*

    The description and interpretation of genomic abnormalities in cancer cells have been at the

    heart of cancer research for more than a century. With exhaustive sequencing of cancer genomes

    across a wide range of human tumors well under way, we are now entering the end game of this

    mission. In the forthcoming decade, essentially complete catalogs of somatic mutations will be

    generated for tens of thousands of human cancers. Here, I provide an overview of what these

    efforts have revealed to date about the origin and behavioral features of cancer cells and how

    this genomic information is being exploited to improve diagnosis and therapy of the disease.

    Much of our current understanding of

    cancer is based on the central tenet thatit is a genetic disease, arising as a clone

    of cells that expands in an unregulated fashion

    because of somatically acquired mutations (1).

    These somatic mutations include base substitu-

    tions, insertions and deletions (indels) of bases,

    rearrangements caused by breakage and abnor-

    mal rejoining of DNA, and changes in the copy

    numberof DNAsegments. They also often include

    epigenetic changes that are stably inherited over

    mitotic DNA replication, for example, alterations

    in methylation of cytosine residues (2).

    Whether a mature cancer clone emerges in an

    individual person is influenced by environmental

    and life-style factors, as well as by the set of ge-

    nomic sequence variants present in the fertilizedegg from which the individual develops and that

    are therefore found in all somatic cells. These so-

    called constitutional orgermlinemutations can

    influence cancer susceptibility in a number of ways,

    including directly altering growth of the cancer

    clone, altering the mutation rate in somatic cells,

    or modulating the metabolism of carcinogens.

    Somatic mutations are thought to occur in the

    genomes of all normal cells as they proceed

    through the rounds of cell division that take place

    during development in utero and during replen-

    ishment of body tissues in postnatal life. Addi-

    tional somatic mutations continue to accumulate

    in cancer cells as they divide. The rate of acqui-sition and the types of somatic mutation that accrue

    can be increased by exogenous and endogenous

    exposures that cause DNA damage and are miti-

    gated by DNA repair processes. Indeed, in the

    event that DNA repair fails, the somatic mutation

    rate may also increase.

    Somatic mutations are more or less randomly

    distributed throughout the genome. However, in

    the cell thatundergoesclonalexpansion to become

    a cancer, a subsettermed driver mutations

    have by chance fallen in a set of key genes, calledcancer genes, and have thus subverted normal

    control of cell proliferation, differentiation, death,

    and other homeostatic interactions with the tissue

    microenvironment (3). Driver mutations confer

    growth advantage upon the neoplastic clone, allow-

    ing it to expand more than normal cells from the

    same tissue, invade into surrounding tissue, and,

    in many cases, metastasize. The number of driver

    mutations in a cancer cell reflects the number of

    mutated cancer genes and thus the deregulation

    of cell biological processes required to convert a

    normal cell into a symptomatic cancer clone. The

    remainingand often the large majority of

    mutations are passengers, which, by definition,

    do not confer growth advantage. The number ofpassenger mutations in a cancer genome primar-

    ily reflects the number of mitotic cell divisions

    between the fertilized egg and the cancer cell and

    the mutation rate at each of these cell divisions.

    Thus, the catalog of somatic mutations in the ge-

    nome of a cancer cell represents genomic changes

    that usually accumulate over several decades. It

    includes the mutations responsible for conferring

    the various aspects of the neoplastic phenotype

    and bears the imprints of the mutational processes

    that caused the disease in the first place.

    Cataloging Mutations in Human

    Cancer Genomes

    Over thepast half-century a seriesof technologies

    have been deployed to characterize systematical-

    ly, at ever-increasing levels of resolution, the state

    of cancer genomes across the range of cancer

    types (Fig. 1). The earliest, and still one of the

    most influential in its impact on cancer science,

    was cytogenetic studies of chromosomes from

    cancer cells. These revealed abnormalities of chro-

    mosome copy number and the presence of somat-

    ically acquired rearrangements (chromosomal

    translocations). They showed that some cancer

    types had very disordered genomes whereas others

    displayed few genomic abnormalities. They also

    yielded evidence that certain positions in the

    genome were recurrently rearranged in particular

    cancer types, from which it was inferred that a

    cancer gene resided at the rearrangement break-

    points. After the widespread adoption of recom-

    binant DNA technology in the 1980s, it became

    possible to isolate and sequence the genome inthe vicinity of these recurrently rearranged regions,

    leading to the identification of many rearranged

    cancergenes, particularly in leukemias, lymphomas,

    and sarcomas (4).

    The next major suite of technologies primar-

    ily provided evidence of copy number change in

    cancer genomes, but at higher resolution than was

    generally possible by cytogenetics. These ap-

    proaches confirmed the variation in extent of copy

    number change between individualcancer genomes

    and highlighted regions showing recurrent in-

    creases or reductions in copy number. Subsequent

    studies focusing on these recurrently abnormal

    regions provided a further harvest of new cancergenes (5, 6).

    These technologies had their limitations. Most

    obviously, they could not directly detect base

    substitutions or small indels. The emergence of

    the draft human genome sequence in 2000 em-

    powered the study of cancer genomes in many

    ways. In particular, it provided a template for the

    design of polymerase chain reaction (PCR) primer

    pairs to amplify and


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