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Plaintiff’s Memorandum In Support of Motion for Partial Summary Judgment and Injunctive Relief 16-cv-4294-WHO 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 LAW OFFICES MORISSET, SCHLOSSER, JOZWIAK & SOMERVILLE 1115 Norton Building, 801 Second Avenue Seattle, Washington 98104-1509 Tel: 206-386-5200 Fax: 206-386-7322 Thomas P. Schlosser WSBA #06276 Thane D. Somerville WSBA #31468 (pro hac vice) MORISSET, SCHLOSSER, JOZWIAK & SOMERVILLE Suite 1115, Norton Building 801 Second Avenue Seattle, WA 98104-1509 Tel: 206-386-5200 Fax: 206-386-7322 [email protected] [email protected] Attorneys for Plaintiff Hoopa Valley Tribe Patricia A. Prochaska, CA #142161 Attorney at Law 577 9th Avenue Menlo Park, CA 94025 Telephone: 650-562-7060 [email protected] Local Counsel for Plaintiff UNITED STATES DISTRICT COURT NORTHERN DISTRICT OF CALIFORNIA SAN FRANCISCO DIVISION HOOPA VALLEY TRIBE, Plaintiff, v. U.S. BUREAU OF RECLAMATION and NATIONAL MARINE FISHERIES SERVICE, Defendants. ) ) ) ) ) ) ) ) ) ) ) ) ) ) Case No. 16-cv-4294-WHO PLAINTIFF’S MEMORANDUM IN SUPPORT OF MOTION FOR PARTIAL SUMMARY JUDGMENT, AND INJUNCTIVE RELIEF Judge: Honorable William H. Orrick Hearing Date: January 11, 2017 Hearing Time: 2:00 PM Courtroom: 2, 17 th Floor Case 3:16-cv-04294-WHO Document 69-1 Filed 12/01/16 Page 1 of 31
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Plaintiff’s Memorandum In Support of Motion for Partial Summary Judgment and Injunctive Relief 16-cv-4294-WHO

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LAW OFFICES

MORISSET, SCHLOSSER, JOZWIAK & SOMERVILLE 1115 Norton Building, 801 Second Avenue

Seattle, Washington 98104-1509 Tel: 206-386-5200 Fax: 206-386-7322

Thomas P. Schlosser WSBA #06276 Thane D. Somerville WSBA #31468 (pro hac vice) MORISSET, SCHLOSSER, JOZWIAK & SOMERVILLE Suite 1115, Norton Building 801 Second Avenue Seattle, WA 98104-1509 Tel: 206-386-5200 Fax: 206-386-7322 [email protected] [email protected] Attorneys for Plaintiff Hoopa Valley Tribe Patricia A. Prochaska, CA #142161 Attorney at Law 577 9th Avenue Menlo Park, CA 94025 Telephone: 650-562-7060 [email protected] Local Counsel for Plaintiff

UNITED STATES DISTRICT COURT

NORTHERN DISTRICT OF CALIFORNIA

SAN FRANCISCO DIVISION HOOPA VALLEY TRIBE, Plaintiff, v. U.S. BUREAU OF RECLAMATION and NATIONAL MARINE FISHERIES SERVICE, Defendants.

) ) ) ) ) ) ) ) ) ) ) ) ) )

Case No. 16-cv-4294-WHO PLAINTIFF’S MEMORANDUM IN SUPPORT OF MOTION FOR PARTIAL SUMMARY JUDGMENT, AND INJUNCTIVE RELIEF Judge: Honorable William H. Orrick Hearing Date: January 11, 2017 Hearing Time: 2:00 PM Courtroom: 2, 17th Floor

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TABLE OF CONTENTS

I.  INTRODUCTION ............................................................................................................... 1 

II.  STATEMENT OF ISSUES ................................................................................................. 2 

III.  STATEMENT OF FACTS .................................................................................................. 2 

IV.  STANDARD OF REVIEW ................................................................................................. 9 

V.  ARGUMENT AND AUTHORITY .................................................................................... 9 

A.  Plaintiff Is Entitled to Partial Summary Judgment Because NMFS and BOR Each Have A Legal Duty to Reinitiate Formal Consultation Based on the Take Exceedances That Occurred in 2014 and 2015 and Neither NMFS or BOR Have Reinitiated Formal Consultation. ............................................................................. 9 

B.  Plaintiff Is Entitled To An Injunction to Prevent Imminent and Irreparable Harm That Would Result to SONCC Coho From Klamath Project Operations Pursuant to the Flows Prescribed in the 2013 BiOp. ............................................................ 16 

1.  Increased Flows Above and Beyond Those in the 2013 BiOp Are Necessary to Protect SONCC Coho From Irreparable Injury. .................. 18 

2.  The Tribe Seeks Implementation of Measures in the 2016 DTAT Guidance Document Pending Completion of Reinitiated Consultation. ... 20 

3.  An Injunction Is Necessary As Soon As Possible to Prevent Imminent Harm And Must Remain In Place Pending Completion of Consultation. . 23 

VI.  CONCLUSION ................................................................................................................. 25 

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TABLE OF AUTHORITIES

CASES

Alliance for Wild Rockies v. Krueger, 950 F. Supp. 2d 1196 (D. Montana 2013) ............................................................................ 24

Amoco Prod. Co. v. Village of Gambell, AK, 480 U.S. 531 (1987) ............................................................................................................. 17

Arizona Cattle Growers’ Association v. USFWS, 273 F.3d 1229 (9th Cir. 2001) ............................................................................................... 11

Center for Biological Diversity v. U.S. Bureau of Land Management, 698 F.3d 1101 (9th Cir. 2012) ............................................................................................... 11

Cottonwood Envtl. Law Center v. U.S. Forest Serv., 789 F.3d 1075 (9th Cir. 2015) ........................................................................................ passim

Defenders of Wildlife v. Martin, 454 F. Supp. 2d 1085 (W.D. Wash. 2006) ........................................................................... 24

eBay Inc. v. MercExchange, L.L.C., 547 U.S. 388 (2006) ............................................................................................................. 16

Gifford Pinchot Task Force v. USFWS, 378 F.3d 1059 (9th Cir. 2004) ................................................................................... 11, 14, 15

Greenpeace v. NMFS, 80 F. Supp. 2d 1137 (W.D. Wash. 2000) ............................................................................. 24

Karuk Tribe v. U.S. Forest Service, 681 F.3d 1006 (9th Cir. 2012) ............................................................................................... 23

Mt. Graham Red Squirrel v. Madigan 954 F.2d 1441 (9th Cir. 1992) .............................................................................................. 15

NRDC v. Evans, 364 F. Supp. 2d 1083 (N.D. Cal. 2003) .......................................................................... 12, 15

Oregon Natural Desert Ass’n v. Tidwell, 716 F. Supp. 2d 982, 1006 (D. Or. 2010) ................................................................. 11, 12, 13

Pacific Coast Federation of Fishermen’s Associations (PCFFA) v. U.S. Bureau of Reclamation, 138 F. Supp. 2d 1228 (N.D. Cal. 2001) ................................................. 4, 8, 21

Pacificans for a Scenic Coast v. Cal. DOT, Case No. 15-cv-02090-VC, 2016 U.S. Dist. LEXIS 119479 (N.D. Cal., Sep. 2, 2016) ................................................................................................ 11, 13

PCFFA v. Bureau of Reclamation, 226 Fed. Appx. 715, 717 (9th Cir. 2007) .............................................................................. 15

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Salmon Spawning & Recovery Alliance v. Gutierrez, 545 F.3d 1220 (9th Cir. 2008) ............................................................................................... 11

Sierra Club v. Marsh, 816 F.2d 1376 (9th Cir. 1987) ......................................................................................... 17, 23

Thomas v. Peterson, 753 F.2d 754 (9th Cir. 1985) ................................................................................................. 17

TVA v. Hill, 437 U.S. 153 (1978) ............................................................................................................. 17

Washington Toxics Coalition v. Environmental Protection Agency, 413 F.3d 1024 (9th Cir. 2005) ................................................................................... 16, 18, 23

Western Watersheds v. Kraayenbrink, 632 F.3d 472 (9th Cir. 2011) ................................................................................................... 9

STATUTES

16 U.S.C. § 1532(19) .................................................................................................................... 4

16 U.S.C. § 1536(a) ...................................................................................................................... 4

16 U.S.C. § 1536(a)(2) ......................................................................................................... 10, 23

16 U.S.C. § 1538 .......................................................................................................................... 4

16 U.S.C. § 1540(g) ...................................................................................................................... 9

16 U.S.C. §1536(d) ..................................................................................................................... 23

Administrative Procedure Act, 5 U.S.C. § 704 ............................................................................ 9

Administrative Procedure Act, 5 U.S.C. § 706 ............................................................................ 9

Endangered Species Act, 16 U.S.C. §§ 1531 et seq ............................................................ passim

REGULATIONS 

50 C.F.R. § 402.14(g)(4) ........................................................................................................... 15

50 C.F.R. § 402.02 ...................................................................................................................... 15

50 C.F.R. § 402.09 ...................................................................................................................... 23

50 C.F.R. § 402.13 ................................................................................................................ 12, 13

50 C.F.R. § 402.14(i)(4) ....................................................................................................... 10, 15

50 C.F.R. § 402.16 ............................................................................................................... passim

50 C.F.R. § 402.16(a) ................................................................................................................. 15

50 C.F.R. § 402.16(b) ................................................................................................................. 15

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OTHER AUTHORITIES

62 Fed. Reg. 24588 (May 6, 1997) ........................................................................................... 2, 3

64 Fed. Reg. 24,049, 24,059 (May 5, 1999) ................................................................................. 3

RULES

Fed. R. Civ. P. 56(a) ..................................................................................................................... 9

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I. INTRODUCTION

This case involves the Federal Defendants’ failure to comply with their legal obligations

to protect certain imperiled anadromous salmon, which are central to the subsistence, culture,

and economy of the Plaintiff Hoopa Valley Tribe. In May 2013, pursuant to the requirements

of the Endangered Species Act (“ESA”), Defendant National Marine Fisheries Service

(“NMFS”) produced a Biological Opinion (“2013 BiOp”) and Incidental Take Statement

(“ITS”) that set specific standards governing Defendant Bureau of Reclamation’s (“BOR”)

operation of the Klamath Project (“Project”).1 Relevant here, NMFS set standards relating to

the maximum permissible incidence of fish disease downstream of the Project – disease that is

exacerbated by low flows resulting from BOR’s Project operations.

While operating under other terms of the 2013 BiOp approved by NMFS, BOR’s

Project operations resulted in significant exceedances of the fish disease standards in both 2014

and 2015, resulting in excessive and unlawful take of ESA-listed fish species. Under federal

regulations, these exceedances of the required standards have specific consequences and

mandate specific actions by the Federal Defendants: Pursuant to 50 C.F.R. § 402.16, NMFS

and BOR must reinitiate formal consultation with each other to evaluate Project operations and

develop measures necessary to avoid excessive take and to prevent jeopardy to the species.

During the reinitiated formal consultation, no action can be taken by the Federal Defendants

that could harm the ESA-listed species pending completion of the formal consultation, which

occurs upon publication of a new BiOp by NMFS. Here, despite the significant and undisputed

exceedances of the standards set by NMFS in the 2013 BiOp and ITS, NMFS and BOR have

failed to reinitiate formal consultation. The Tribe seeks summary judgment on its claim that

NMFS and BOR have unlawfully failed to reinitiate formal consultation and an order directing

them to reinitiate formal consultation regarding effects of Project operations on SONCC coho.

1 The 2013 BiOp is found at Exhibit A to the Declaration of Jason Cameron (Dkt. #33-1).

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Prior to and pending completion of the reinitiated formal consultation, the Tribe seeks an

injunction to prevent imminent and irreparable harm to the species that will occur if BOR

continues to operate the Project pursuant to only the minimum flows prescribed by the 2013

BiOp. Where agencies do not comply with procedural or substantive requirements of the ESA,

an injunction is the appropriate remedy to protect listed species until the government complies

with the law. The injunctive relief sought here would, in accordance with the best available

science, require additional flow releases necessary to limit incidence of fish disease to below the

levels deemed acceptable in the 2013 BiOp. To prevent imminent and irreparable harm to

SONCC Coho from Project operations, an injunction must be in place as soon as possible and

not later than March 1, 2017 and must continue until completion of the reinitiated consultation.

II. STATEMENT OF ISSUES

A. Whether Plaintiff is entitled to summary judgment on its First Claim for Relief,

which alleges that NMFS and BOR have unlawfully failed to reinitiate formal consultation

pursuant to 50 C.F.R. § 402.16 despite occurrence of take exceedances in 2014 and 2015?

B. Whether Plaintiff is entitled to injunctive relief, which is necessary to prevent

imminent and irreparable harm to SONCC Coho pending completion of formal consultation?

III. STATEMENT OF FACTS2

The Klamath River basin straddles northern California and southern Oregon. In 1997,

NMFS listed Southern Oregon/Northern California (SONCC) Coho salmon as a threatened

species under the ESA. 62 Fed. Reg. 24588 (May 6, 1997). In listing SONCC Coho as

2 There is no genuine dispute of material fact as to whether BOR and NMFS have reinitiated

formal consultation. Federal Defendants concede that take exceedances occurred in 2014 and 2015 and that BOR and NMFS have not reinitiated formal consultation. Dkt. #1, Exh. 2, p. 2; Dkt. #33, pp. 1, 19 (contending Federal Defendants have commenced “informal” consultation); Dkt. #60, fn. 8. Given the legal obligation in 50 C.F.R. § 402.16 to reinitiate formal consultation based on the undisputed take exceedances, Plaintiff is entitled to summary judgment on its First Claim for Relief against both Defendants. This Statement of Facts and supporting Declarations are relevant primarily to Plaintiff’s request for injunctive relief to protect threatened SONCC Coho from irreparable harm during the upcoming Spring 2017 juvenile outmigration.

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threatened, NMFS explained that water diversions and water withdrawals were major activities

responsible for the decline of Coho salmon in Oregon and California. 62 Fed. Reg. 24588, at

24592-93. In designating critical habitat for the SONCC Coho salmon under the ESA, NMFS

described that “essential features” of Coho habitat include water quantity, velocity, and

temperature. 64 Fed. Reg. 24,049, 24,059 (May 5, 1999). NMFS has identified the populations

of SONCC Coho affected by the Project as having a moderate to high (in the case of Upper

Klamath River populations) risk of extinction. 2013 BiOp at pp. 312, 327.

SONCC Coho have a three-year life cycle. Coho eggs typically hatch in March, emerge

two weeks after hatching as “fry,” and spend up to 15 months in fresh water. Fry become smolt

after 15 months and migrate to the ocean primarily between March and June. Water quantity

and quality are especially significant to the juvenile outmigration. Declaration of Sean Ledwin,

Dkt. # 44-1, ¶ 6. Spring months of March through June represent the peak of juvenile coho

presence in the mainstem Klamath River and are critical months in which to provide adequate

water in the mainstem Klamath for SONCC Coho. Id.; 2013 BiOp, at p. 270.

The Klamath Project (“Project”), authorized by Congress in 1905, consists of an inter-

related system of dams, canals, and pumping stations located in southern Oregon and northern

California. The Project is managed and operated by BOR and it provides water taken from the

Klamath River to irrigate approximately 200,000 acres of agricultural land each year. A map

of the Project and surrounding area is at pages 8-9 of the 2013 BiOp.

Project operations result in significant out-of-stream diversions of water. 2013 BiOp, at

33-34 (defining full Project irrigation supply as 390,000 acre-feet). One acre-foot equals

325,851 gallons. Diversions significantly impact flow levels and anadromous fish habitat in

the Klamath River downstream of Iron Gate Dam. The Klamath River’s natural flow regime is

significantly altered by Project operations. 2013 BiOp, p. 229. BOR, like all federal agencies,

must comply with the ESA and ensure that its operations do not result in jeopardy or unlawful

“take” of ESA-listed species, such as the SONCC Coho downstream of the Project and Iron

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Gate Dam.3 16 U.S.C. § 1536(a) (no “jeopardy”); 16 U.S.C. § 1538 (“take” prohibition); 16

U.S.C. § 1532(19) (defining “take”). Flows released from Iron Gate Dam contribute significant

and often the majority of instream flows utilized by fish in the mainstem Klamath River

between Iron Gate Dam and the Trinity River confluence. Ledwin Decl., Dkt. #44-1, ¶ 6.

BOR maintains ongoing discretionary management authority and control over the

Project. Since 1996, BOR has operated the Project with operating plans that identify minimum

flow levels in the Klamath River downstream of Iron Gate Dam for protection of fish. These

plans identify flows to be met – after agricultural diversions are satisfied – during particular

times of the year in cubic feet per second (“cfs”) of water as measured flowing past Iron Gate

Dam. Pacific Coast Federation of Fishermen’s Associations (PCFFA) v. U.S. Bureau of

Reclamation, 138 F. Supp. 2d 1228, 1232 (N.D. Cal. 2001). Water set aside by BOR for fish

purposes each year is referred to as the Environmental Water Account. 2013 BiOp, pp. 27-28.

As NMFS explained in the 2013 BiOp, fish disease is a significant factor limiting

survival and recovery of SONCC Coho in the Klamath River. 2013 BiOp, at pp. 220, 222, 341

(noting that “disease effects . . . likely have a substantial impact on the survival of juvenile coho

salmon in [the Upper Klamath River reach]).” See also Ledwin Decl., Dkt. #44-1, ¶ 7;

Declaration of Joshua Strange, Ph.D., ¶ ¶ 6-7. In fact, “[o]f all the adverse effects of the

proposed action, NMFS believes that the disease risk from C.shasta is the most significant to

coho salmon.” 2013 BiOp, at p. 377. Incidence of fish disease is significantly correlated to low

flows in the river and conversely increased flows are significantly correlated with decreasing

infection rates. Ledwin Decl., Dkt. #44-1, ¶¶ 8-11. “NMFS believes that the high incidence of

disease in certain years within the mainstem Klamath River results largely from the reduction in

3 Iron Gate Dam is located on the Klamath River downstream of the Project and is part of

the separate Klamath Hydroelectric Project, which consists of a series of dams operated on the Klamath River by PacifiCorp, a private company, pursuant to a federal license. 2013 BiOp, at p. 1. PacifiCorp coordinates with BOR to provide flow releases from Iron Gate Dam that are necessary to meet BOR’s obligations to SONCC Coho salmon under the ESA. Id., at p. 24.

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magnitude, frequency, and duration of mainstem flows from the natural flow regime under

which coho salmon evolved.” 2013 BiOp, p. 341. Increased spring flows dilute the prevalence

of the disease and reduce the transmission efficiency. 2013 BiOp, p. 342; see also Ledwin

Decl., Dkt. #44-1, ¶¶ 8-10; Strange Decl., ¶¶ 11-12.

Because Project operations reduce the amount of spring flow released from Iron Gate

Dam into the Klamath River downstream, NMFS acknowledged that Project operations would

likely result in hydrologic conditions in the mainstem Klamath River that will likely increase

the percentage of disease-related mortality to coho salmon fry and juveniles in the mainstem

Klamath and also likely increase the percentage of coho salmon fry and juveniles that

experience sublethal adverse effects such as impaired growth, etc. 2013 BiOp, at pp. 343, 350.

“Of all the different life stages, coho salmon fry and juveniles (parr and smolts) face the highest

risks from the hydrologic effects of the [Project], especially during the spring.” Id., at p. 355.

In the 2013 BiOp, NMFS analyzed the minimum flows that BOR proposed to release

from Iron Gate Dam during its Project operations. The daily minimum flows for April, May,

and June provide 1325 cfs, 1175 cfs and 1025 cfs respectively at Iron Gate Dam. 2013 BiOp,

at p. 343. NMFS acknowledged that these flows might not be adequate for purposes of diluting

disease-causing agents in the river, but NMFS speculated that the minimum flows would

provide a reasonable limit on disease going forward. 2013 BiOp, at p. 343. NMFS stated:

“While these proposed minimum daily flows are not likely sufficient to dilute actinospore

concentrations to below 5 genotype II spores/L when actinospore concentrations are high, these

minimum daily flows provide a limit to the increase in disease risks posed to coho salmon

under the proposed action, which may reduce disease-related mortality to coho salmon.” BiOp,

at pp. 343-344. Implementation of the 2013 BiOp’s flow regime in 2014 and 2015 confirmed

that NMFS was wrong: the flow regime approved by NMFS is not sufficient to limit disease-

related mortality below the levels NMFS set. Ledwin Decl., Dkt. #44-1, ¶ 11-12. Infection

rates skyrocketed under the 2013 BiOp flow regime, resulting in the excessive take of coho. Id.

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Relying in part on its assumptions that the minimum flow regime would provide a

sufficient limit to disease infection rates, NMFS rendered its “biological opinion that the action,

as proposed, is not likely to jeopardize the continued existence of the SONCC coho salmon

ESU.” 2013 BiOp, at p. 377. NMFS also provided BOR with an Incidental Take Statement

(“ITS”) pursuant to Section 7(b)(4) of the ESA. 2013 BiOp, at p. 378. The ITS was required

because, despite NMFS’ no-jeopardy determination, NMFS found that Project operations

would continue to “take” SONCC coho salmon due to “habitat reductions during March

through June” and “increased disease risks during April to August.” 2013 BiOp, at p. 388. An

ITS provides BOR with a safe harbor from liability under Section 9 of the ESA for take that is

at or below the authorized levels in the ITS. In addition, the ITS provides a check on NMFS’

assumption that Project operations under the new minimum flow regime would not result in

jeopardy to SONCC Coho. The disease rates that occurred in 2014 and 2015 disproved the

assumptions regarding disease that support NMFS’ no jeopardy conclusion in the 2013 BiOp.

The ITS sets forth specific parameters for the extent of take that is authorized. 2013

BiOp, at p. 392. As related to increased disease risks, the ITS prescribes the maximum amount

of incidental take as follows: “[M]easured by a surrogate of up to 54 percent (via histology or

49 percent via QPCR) of the total annual Chinook salmon juveniles in the mainstem Klamath

River between the Shasta River and the Trinity River may be infected with C. shasta during the

months of May to July.” 2013 BiOp, at p. 392. NMFS chose this level of maximum permissible

take from disease incidence because it equated to the “highest percentage of C. shasta infection

rates for Chinook salmon observed in the [2004-2012 period of record].” 2013 BiOp, at p. 391;

Ledwin Decl., Dkt. #44-1, ¶¶ 12-13. NMFS used disease incidence in Chinook as a surrogate

measurement for coho disease incidence, because Chinook salmon have a similar susceptibility

to C. shasta as coho and because Chinook salmon are more abundant than coho and disease

monitoring of Chinook has been occurring since 2004. 2013 BiOp, at p. 390. NMFS further

explained, consistent with 50 C.F.R. § 402.16, that: “If the percent of C. Shasta infections for

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Chinook salmon juveniles in the mainstem Klamath River between Shasta River and Trinity

River during May to July exceed these levels (i.e., 54% infection via histology or 49% infection

via QPCR), reinitiation of formal consultation will be necessary.” 2013 BiOp, at 391. The 49%

limit imposed by NMFS was equivalent to the highest recorded disease rate from 2004-2013. Id.

Infection rates for both 2014 and 2015 greatly exceeded the maximum permissible

infection rate of 49% provided for in the ITS. In 2014, the average juvenile Chinook salmon C.

shasta infection rate in the Klamath River upstream of the Trinity River confluence from May

through July was estimated at 81% and in 2015, the average juvenile Chinook salmon C. shasta

infection rate in the same part of the river was estimated at 91%. Ledwin Decl., at ¶ 11; Dkt.

#1, Exh. 2, p. 2. Despite these significant take exceedances, neither BOR nor NMFS have

reinitiated formal consultation. Ledwin Decl., Dkt. #44-1, ¶¶ 23-24. Federal Defendants do not

dispute the lack of formal consultation. See Dkt. #33, pp. 1, 19 (contending “informal” rather

than “formal” consultation is occurring); Dkt. #60, n. 8. Continued Project operations pursuant

to the 2013 BiOp and ITS will result in excessive take and potential jeopardy to SONCC Coho

in the Klamath River, a species NMFS acknowledges is at significant risk of extinction. Ledwin

Decl., Dkt. #44-1, ¶¶ 13-21; Strange Decl., ¶¶ 6-8; 2013 BiOp, p. 312, 327.

In 2016, following the 2014 and 2015 take exceedances, U.S. Fish and Wildlife Service

(“FWS”) biologists developed technical memoranda summarizing recent studies and the best

available science relating to C. shasta infections in the Klamath River. Ledwin Second Decl.,

¶ 5. The technical memoranda provided fish managers with a contemporary understanding of

the science relating to C. shasta in the Klamath River and provided a scientific basis to inform

and support resource management decisions. Id., ¶ 6. A Disease Technical Advisory Team

(DTAT) of fish biologists, hydrologists, and other experts convened to evaluate the FWS

memoranda and other data and to prepare up-to-date recommendations on how to reduce fish

disease levels and infection rates in the Klamath River to acceptable levels. Id., ¶ 7.

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In November 2016, a DTAT subgroup produced a draft Guidance Document that

contains specific recommended measures to reduce C. shasta infection. Ledwin Second Decl.,

¶ 9, Exh. C. As NMFS had recognized in the 2013 BiOp, DTAT identified the relationship

between Project operations, low and altered flow regimes in the Klamath River, and incidence

of fish disease. Ledwin Second Decl., ¶ 8, Exh. C, pp. 2, 11, 16. DTAT identified “several

types of actions that could be implemented immediately that would have a high likelihood of

reducing the infection prevalence and severity of C. shasta in the Klamath River.” Ledwin

Second Decl., Exh. C, p. 4. These measures involve additional flow releases at specific times

and based on specific triggers designed to disrupt the agents that cause fish disease in the

Klamath River. Id., Exh. C, pp. 4, 7-12. The Guidance Document concludes:

The technical memoranda developed by the DTAT clearly demonstrate that disease rates can best be controlled by disrupting the habitat of M. speciosa and diluting C. shasta spores with increased flows. Perfecting the magnitude, duration, and intervals of these increased flow releases will be achieved over time through adaptive management practices; however, Klamath fisheries are in dire need of measures to alleviate high disease rates immediately (emphasis added).

Id., Exh. C, p. 16. The technical memoranda and resulting Guidance Document represents the

best available science as related to prevention of fish disease in the Klamath River. Ledwin

Second Decl., ¶ 10; PCFFA, 138 F.2d at 1249-50. DTAT presented the Guidance to NMFS

and BOR on November 9, 2016. Neither NMFS nor BOR have reinitiated formal consultation

to evaluate this new information or to incorporate it into a new BiOp and ITS. Id., ¶ 12. The

failure to reinitiate formal consultation, despite the undisputed take exceedances, is in violation

of 50 C.F.R. § 402.16. The Tribe is entitled to summary judgment on its First Claim for Relief.

Flow measures described in the Guidance Document would require at least 50,000 acre-

feet of water above and beyond that called for in the 2013 BiOp. Second Ledwin Decl., Exh. C,

p. 11.4 Thus, prior to and pending completion of the reinitiated formal consultation, and for

4 Full implementation of the Guidance Document measures could require more than 50,000

acre-feet of water. The Guidance Document specifically calls on BOR to reserve 50,000 acre-feet for implementation of the Spring dilution flows. Ledwin Second Decl., Exh. C., p. 11.

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the purpose of preventing imminent and irreparable injury to SONCC coho, the Tribe seeks an

order enjoining BOR to reserve and set aside no less than 50,000 acre-feet of water, in addition

to any amounts currently required for the 2013 BiOp Environmental Water Account (2013

BiOp, p. 27-28), for the purpose of implementing the flow measures described in the Guidance

Document and enjoining BOR to implement those flow measures prior to and during the Spring

2017 juvenile coho outmigration. Ledwin Second Decl., ¶ 19-20; Strange Decl., ¶ 11-13.

IV. STANDARD OF REVIEW

Plaintiff filed the above-captioned lawsuit on July 29, 2016 and an amended complaint

on September 21, 2016. (Dkt. ## 1, 25).5 Plaintiff’s First Claim for Relief alleges that both

BOR and NMFS have acted unlawfully by failing to reinitiate formal consultation with the

other based on the undisputed take exceedances in 2014 and 2015. The claim against BOR and

this Court’s jurisdiction over such claim arises under the ESA citizen suit provision in 16

U.S.C. § 1540(g). The claim against NMFS and this Court’s jurisdiction over such claim arises

under the Administrative Procedure Act (APA), 5 U.S.C. §§ 704, 706.

Irrespective of whether a claim alleging violation of the ESA by a federal agency is

brought under the APA or directly under the ESA citizen suit provision, the APA’s “arbitrary

and capricious” standard of review applies. Western Watersheds v. Kraayenbrink, 632 F.3d

472, 481, 496 (9th Cir. 2011).6 That is, agency action will be set aside where it is arbitrary,

capricious, an abuse of discretion, or otherwise not in accordance with law. Id. Here, the

failure to reinitiate formal consultation is not in accordance with 50 C.F.R. § 402.16. Summary

judgment is appropriate because there is no genuine dispute as to any material fact and Plaintiff

is entitled to judgment as a matter of law on its First Claim for Relief. Fed. R. Civ. P. 56(a).

5 Plaintiff also filed a corrected first amended complaint on October 19, 2016 to correct an

error related to the Fourth Claim for Relief, which is not at issue in this motion. 6 Although courts have adopted the APA standard of review when adjudicating ESA claims,

the scope of review for claims arising under the ESA citizen suit statute is not limited to any administrative record. Kraayenbrink, 632 F.2d at 497. Extra-record evidence is admissible. Id.

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V. ARGUMENT AND AUTHORITY

A. Plaintiff Is Entitled to Partial Summary Judgment Because NMFS and BOR Each Have A Legal Duty to Reinitiate Formal Consultation Based on the Take Exceedances That Occurred in 2014 and 2015 and Neither NMFS or BOR Have Reinitiated Formal Consultation.

Section 7(a)(2) of the ESA requires: “[e]ach Federal agency shall, in consultation with .

. . the Secretary [of Commerce or the Interior] insure that any action authorized, funded, or

carried out by such agency . . . is not likely to jeopardize the continued existence of any

endangered species or threatened species or result in the destruction or adverse modification of

[the critical] habitat of such species . . . .” 16 U.S.C. § 1536(a)(2). In this case, the 2013 BiOp

is the product of formal consultation that occurred between NMFS and BOR relating to Project

operations between the years 2013 through 2023. The 2013 BiOp and ITS set a limit on the

amount of incidental take that could result from fish disease and it is undisputed that such limit

was significantly exceeded by BOR in 2014 and 2015. Dkt. #1, Exh. 2, p. 2.

Based on the undisputed take exceedances, BOR and NMFS were required to reinitiate

formal consultation pursuant to 50 C.F.R. § 402.16, which provides: “Reinitiation of formal

consultation is required and shall be requested by the Federal Agency or by the Service, where

discretionary Federal involvement or control over the action has been retained or is authorized

by law and: (a) if the amount or extent of taking specified in the incidental take statement is

exceeded; . . . .” BOR is also required to reinitiate formal consultation pursuant to 50 C.F.R.

§ 402.14(i)(4). Here, it is undisputed that the extent of taking specified in the ITS was

significantly exceeded in both 2014 and 2015 by BOR and that formal consultation has not

been reinitiated by either BOR or NMFS. Dkt. #1, Exh. 2, p. 2; Dkt. #33, p. 1, 19; Dkt. #60, n.

8; Ledwin Second Decl., ¶ 12. Plaintiff is entitled to summary judgment on its First Claim for

Relief against BOR and NMFS. Cottonwood Envtl. Law Center v. U.S. Forest Serv., 789 F.3d

1075 (9th Cir. 2015) (affirming summary judgment in favor of plaintiff for failure to reinitiate).

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In Cottonwood, the Ninth Circuit affirmed the District Court’s order granting summary

judgment to the plaintiff on a failure to reinitiate claim and rejected a variety of different

defenses raised by the federal agency. The Ninth Circuit held that a plaintiff in a failure to

reinitiate claim is “not required to establish what a Section 7 consultation would reveal, or what

standards would be set, if the [federal agency] were to reinitiate consultation. Ideally, that is

the objective and purpose of the consultation process.” Id. at 1082. Finding the failure to

reinitiate claim ripe, the Ninth Circuit noted that “[b]ecause the alleged procedural violation –

failure to reinitiate consultation – is complete, so too is the factual development necessary to

adjudicate the case.” Id. at 1084. The Ninth Circuit also confirmed the continuing legal

obligation placed on the federal agencies to reinitiate consultation when triggers identified in

50 C.F.R. § 402.16 are met. Id. at 1086-1087 (noting “the ESA’s statutory command that

agencies consult to ensure the ‘continued existence’ of listed species”) (emphasis in original).

The language in 50 C.F.R. § 402.16 means what it says; that is, when the level of take

identified in the ITS is exceeded, reinitiation of formal consultation is mandatory. See, e.g.,

Cottonwood, 789 F.3d at 1088; Center for Biological Diversity v. U.S. Bureau of Land

Management, 698 F.3d 1101, 1108 (9th Cir. 2012) (stating: “If the amount or extent of

incidental taking is exceeded, the action agency ‘must immediately reinitiate consultation . . .

.”); Gifford Pinchot Task Force v. USFWS, 378 F.3d 1059, 1076-77 (9th Cir. 2004) (stating that

“discovery of new facts does not justify an ‘amendment’ to the BiOp, but mandates reinitiating

formal consultations”); Arizona Cattle Growers’ Association v. USFWS, 273 F.3d 1229, 1249

fn. 28, 1251 (9th Cir. 2001) (take limit triggers in ITS are “integral parts of statutory scheme,

determining, among other things, when consultation must be reinitiated”); Pacificans for a

Scenic Coast v. Cal. DOT, Case No. 15-cv-02090-VC, 2016 U.S. Dist. LEXIS 119479 (N.D.

Cal., Sep. 2, 2016) (reinitiation is required once a trigger identified in 50 C.F.R. § 402.16

occurs); Oregon Natural Desert Ass’n v. Tidwell, 716 F. Supp. 2d 982, 1006 (D. Or. 2010)

(agency violated ESA by failing to reinitiate [formal] consultation following take exceedances).

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The duty to reinitiate consultation under 50 C.F.R. § 402.16 lies with both the action

agency (here, BOR) and the consulting agency (here, NMFS). Salmon Spawning & Recovery

Alliance v. Gutierrez, 545 F.3d 1220, 1229 (9th Cir. 2008) (“[t]he duty to reinitiate consultation

lies with both the action agency and the consulting agency”); Gifford Pinchot, 378 F.3d at

1076-77 (stating “. . . FWS [the consulting agency] was obligated to reinitiate consultation

pursuant to 50 C.F.R. § 402.16”); Pacificans, 2016 U.S. Dist. LEXIS 119479, at pp. *36-37

(rejecting federal agency argument that consulting agency lacked duty to reinitiate).

The duty to reinitiate is placed on the consulting agency (as well as the action agency),

because reinitiation relates directly to the opinions, assumptions, and legal standards developed

and imposed by the consulting agency in its BiOp and ITS. When those standards are exceeded

or new information undermines the validity of the BiOp and ITS, both the consulting agency

and action agency have the duty to reinitiate.7 NRDC v. Evans, 364 F. Supp. 2d 1083, 1133

(N.D. Cal. 2003) (“the ITS serves as a check on the agency’s original decision that the

incidental take of listed species resulting from the proposed action will not violate section

7(a)(2) of the ESA.”). In contrast, when formal consultation is required in the first instance

(i.e., prior to the original agency action), the duty is placed only on the action agency to initiate

and request consultation because at that time the action agency is the party with primary

knowledge of the proposed action and the effects that it may have on ESA-listed species.

Reinitiation of formal consultation, however, arises under circumstances that directly relate to

the validity of the consulting agency’s own BiOp and ITS.

In their pending motion to dismiss or stay, Federal Defendants contend that they are

currently engaged in “informal consultation” pursuant to 50 C.F.R. § 402.13. Dkt. #33, pp. 1,

19. See also Dkt. #60, n. 8 (contending that Federal Defendants are “discussing on an

7 Even if the duty to reinitiate were placed solely on the action agency, Plaintiff would still

be entitled to summary judgment and injunctive relief here based on BOR’s failure to reinitiate. There is no dispute that BOR has failed to meet its legal duty to reinitiate formal consultation.

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‘informal basis’ reinitiating formal consultation”). Even if Federal Defendants were conducting

“informal” consultation (which they are not), that still would not comply with their legal duty

to reinitiate “formal” consultation under 50 C.F.R. § 402.16 due to the undisputed take

exceedances. Tidwell, 716 F. Supp. 2d at 1006 (informal consultation following violation of

ITS not consistent with duty to reinitiate formal consultation). 50 C.F.R. § 402.16 requires

reinitiation of formal consultation, which has not occurred in this case.

“Informal consultation” as provided for in 50 C.F.R. § 402.13 is a preliminary process

used to determine whether a proposed action is or is not likely to adversely affect listed species

or critical habitat. It is used to determine whether formal consultation and preparation of a

Biological Opinion will be required in the first instance for a proposed project. 50 C.F.R.

§ 402.13. “Informal consultation” has little to no relevance when determining whether

reinitiation of formal consultation is required.8 Through prior preparation of the existing BiOp

and ITS, the federal agencies have already determined that the action at issue here (operation of

the Project by BOR) is likely to adversely affect listed species including SONCC Coho located

downstream of the Project. The only relevant question at the reinitiation stage is whether one

of the triggers identified in 50 C.F.R. § 402.16 has been met. If such a trigger has been met,

such as the exceedance of take limits here, reinitiation of formal consultation is required. 50

C.F.R. § 402.16; Pacificans, 2016 U.S. Dist. LEXIS 119479, at *37 (N.D. Cal., Sep. 2, 2016)

(reinitiation of consultation required once a trigger identified in 50 C.F.R. § 402.16 occurs),

citing Cottonwood, 789 F.3d at 1088; Tidwell, 716 F. Supp. 2d at 1006 (informal consultation

not sufficient when ITS take limits exceeded). The discussions and correspondence allegedly

occurring at this time are neither formal nor informal consultation as described in the federal

8 In some limited circumstances, reinitiation of informal consultation could be appropriate

where new information discloses a possible impact to listed species as related to a project previously found to have no impact on listed species. But here, where there is no question as to whether Project operations affect listed species and where specific exceedances of take in an ITS have occurred, informal consultation has no role to play. Formal consultation is required.

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regulations – they are simply inter-agency discussions without legal effect, which are occurring

outside the parameters and process provided for by the ESA and its implementing regulations.

Federal Defendants suggest that these ongoing agency discussions are intended to lead

to a “revision” of the ITS prior to the 2017 irrigation season. This simply confirms that Federal

Defendants have no intention to reinitiate formal consultation on the 2013 BiOp or to alter the

minimum flow regime and permitted Project diversions that are at the root of the take

exceedances that occurred in 2014 and 2015 and that are likely to continue occurring. Ledwin

Decl., Dkt. #44-1, ¶¶ 23-24.9 Revision of the ITS would only modify BOR’s safe harbor from

liability for its takings of imperiled SONCC Coho while failing to address the causes of the

take exceedances or developing measures to reduce those excessive levels of take. Id. at ¶ 25.

Core assumptions underlying NMFS’ no-jeopardy determination in its 2013 BiOp, i.e., that

conditions for SONCC coho during 2013-2023 would improve and that disease incidence

would be reduced through implementation of the minimum flow regime and other measures,

have been proven false by 2014-2015 operations that resulted in skyrocketing disease levels.

Reinitiation of formal consultation is required to reevaluate Project operations affecting coho.

It is not lawful for the consulting agency to “revise” or “amend” an existing BiOp or

ITS outside of the formal consultation process where the authorized level of taking has been

exceeded by the action agency or other triggers identified in 50 C.F.R. § 402.16 have been met.

Gifford Pinchot, 378 F.3d at 1076-77. Thus, revision of the ITS, outside of formal

consultation, would be unlawful under the ESA. In Gifford Pinchot, after completing BiOps

relating to timber harvesting under the Northwest Forest Plan, FWS issued “amendments” to

the BiOps outside of formal consultation. Id. The Ninth Circuit ruled that the “amendments”

to the BiOps were unlawful and that reinitiation of formal consultation was required:

9 Federal Defendants’ assertions about their future intentions are also potentially irrelevant due to the recent election and change in Executive Branch leadership that will occur on January 20, 2017. While the Trump Administration’s policy direction in this case is not clear, the current legal obligation to reinitiate formal consultation based on the take exceedances is clear.

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As a general rule, such ‘updates’ are prohibited because they would render the consultation process ‘meaningless’ and would allow the FWS to issue ‘unsupported [BiOps] knowing that it could search for evidentiary support if the opinion was later challenged. Ariz. Cattle Growers’ Ass’n, 273 F.3d at 1245. As we have recognized, the discovery of new facts does not justify an ‘amendment’ to the BiOp, but mandates reinitiating formal consultations. Id. (citing 50 C.F.R. §402.16).

The FWS responds that the general rule does not apply here because, unlike Arizona Cattle Growers, the FWS did not supplement the record, but formally amended the BiOps and it is the amended BiOps that are at issue. The FWS argues that it has the flexibility to do just that, ‘implicitly’ interpreting a regulation. By the same token, the FWS asserts that this is not new evidence, but just data summarized from previously existing data.

We reject the FWS’ argument. If the data is new and the new data may affect the jeopardy or critical habitat analysis, then the FWS was obligated to reinitiate consultation pursuant to 50 C.F.R. § 402.16.

Id. (emphasis added). 50 C.F.R. § 402.16 (and 50 C.F.R. § 402.14(i)(4)) mandates reinitation

of formal consultation, which Federal Defendants have failed to do here. PCFFA v. Bureau of

Reclamation, 226 Fed. Appx. 715, 717 (9th Cir. 2007) (ruling, in litigation involving Klamath

Project: “it is well settled that a previous agency determination in a Biological Opinion cannot

be amended or supplemented with post-determination analysis or evidence without reinitiating

the consultation process” (citing Gifford Pinchot, 378 F.3d at 1076-77)). Formal consultation

concludes with issuance of a BiOp. 50 C.F.R. § 402.02 (defining formal consultation).

In addition to the undisputed take exceedances that mandate reinitiation of formal

consultation under 50 C.F.R. § 402.16(a), reinitiation is also required under 50 C.F.R.

§ 402.16(b) because Project operations in 2014 and 2015 reveal significantly more harmful

effects of Project operations on SONCC coho than were considered by NMFS in the 2013

BiOp. NMFS assumed that SONCC coho abundance and productivity would improve in part

due to stable or lowered disease incidence. 2013 BiOp, at 377. Instead, contrary to NMFS’

assumptions, disease rates significantly increased, which calls into question a core assumption

underlying NMFS’ no-jeopardy determination. Reinitiation of formal consultation is required.

Federal Defendants have conceded that formal consultation is not ongoing at this time

and that NMFS is not preparing a new BiOp as would be required upon reinitiation of formal

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consultation. 50 C.F.R. §§ 402.14(g)(4); 402.16; Madigan, 954 F.2d at 1451; Evans, 364 F.

Supp. 2d at 1133. See Dkt. #33, pp. 1, 19 (contending that NMFS and BOR are engaged in

“informal” consultation and propose to “revise” the ITS); Dkt. #60, n. 8. Because the take

levels permitted by the ITS were exceeded (significantly) in 2014 and again in 2015,

reinitiation of formal consultation is required. Plaintiff requests that this Court grant partial

summary judgment in its favor on its First Claim for Relief in its First Amended Complaint.

B. Plaintiff Is Entitled To An Injunction to Prevent Imminent and Irreparable Harm That Would Result to SONCC Coho From Klamath Project Operations Pursuant to the Flows Prescribed in the 2013 BiOp.

Federal Defendants have failed to comply with their legal obligation to reinitiate formal

consultation. Thus, this Court should order Federal Defendants to reinitiate formal consultation

immediately. Prior to and pending completion of the reinitiated consultation, the Tribe seeks an

injunction prohibiting Federal Defendants from taking any action that could result in take or

jeopardy of SONCC Coho. Washington Toxics Coalition v. Environmental Protection Agency,

413 F.3d 1024, 1035 (9th Cir. 2005) (“the appropriate remedy for violations of the ESA

consultation requirements is an injunction pending compliance with the ESA”). The Tribe

seeks an injunction that would require BOR to release specific flows above and beyond the

minimum flows provided for in the 2013 BiOp, which have been demonstrably insufficient to

protect SONCC from excessive disease and take. Ledwin Decl., Dkt. #44-1, ¶¶ 13-21. More

specifically, the Tribe seeks an injunction compelling BOR to reserve water and release

additional flows as called for in the 2016 DTAT Guidance Document, which represents the best

available science related to the prevention of fish disease in the Klamath River. Ledwin Second

Decl., ¶ 10, 19; Strange Decl., ¶ 12-13. Alternatively, the Tribe seeks an injunction prohibiting

all irrigation deliveries to the Project pending completion of reinitiated formal consultation.

A plaintiff seeking injunctive relief generally must satisfy a four-factor test by showing

that: (1) plaintiff has suffered an irreparable injury; (2) that remedies available at law, such as

monetary damages, are inadequate to compensate for that injury; (3) that considering the

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balance of hardships between the plaintiff and defendant, a remedy in equity is warranted; and

(4) that the public interest would not be disserved by a permanent injunction. Cottonwood, 789

F.3d at 1088, citing eBay Inc. v. MercExchange, L.L.C., 547 U.S. 388, 391 (2006). However,

in cases involving the ESA, Congress has stripped courts “of at least some of their equitable

discretion in determining whether injunctive relief is warranted.” Id. at 1090. “Congress has

spoken in the plainest of words, making it abundantly clear that the balance has been struck in

favor of affording endangered species the highest of priorities . . . .” Sierra Club v. Marsh, 816

F.2d 1376, 1383 (9th Cir. 1987); see also TVA v. Hill, 437 U.S. at 173 (finding that Congress in

enacting the ESA plainly intended to halt and reverse the trend towards species extinction,

whatever the cost, and finding injunction was appropriate remedy when a nearly-completed,

multimillion-dollar dam threatened and endangered snail darter and its critical habitat).

Regarding the third factor (“balancing of equities”) of the traditional test, “courts do not

have discretion to balance parties’ competing interests in ESA cases because Congress

‘afford[ed] first priority to the declared national policy of saving endangered species.’”

Cottonwood, 789 F.3d at 1090, citing TVA v. Hill, 437 U.S. 153, 185 (1978); see also Amoco

Prod. Co. v. Village of Gambell, AK, 480 U.S. 531, 543 n. 9 (explaining that ESA “foreclose[s]

the traditional discretion possessed by an equity court”). Regarding the fourth factor (“public

interest”), Congress, in enacting the ESA, “established an unparalleled public interest in the

‘incalculable’ value of preserving endangered species.” Id., citing Hill, 437 U.S. at 187-88.

The second factor regarding adequacy of legal remedies such as monetary damages is generally

not applicable in environmental cases and especially in ESA cases. Cottonwood, 789 F.3d at

1090 (“[i]t is the incalculability of the injury that renders the ‘remedies available at law, such as

monetary damages . . . inadequate”); Amoco, 480 U.S. at 545 (“Environmental injury, by its

nature, can seldom be adequately remedied by money damages”). Thus, the only relevant

inquiry in cases involving species listed as endangered or threatened under the ESA is whether

an injunction is necessary to prevent irreparable injury. Cottonwood, 789 F.3d at 1090-1091.

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Regarding the showing of irreparable injury, the Ninth Circuit has long recognized an

exception to the traditional test when addressing violations of ESA consultation requirements.

Starting with Thomas v. Peterson, 753 F.2d 754 (9th Cir. 1985), the Court held that “because

‘[i]rreparable damage is presumed to flow from a failure properly to evaluate’ environmental

impacts of an agency action, an injunction is typically the appropriate remedy for a Section 7

violation.” Cottonwood, 789 F.3d at 1088, citing Thomas, 753 F.2d at 764.10 In Wash. Toxics

Coalition, 413 F.3d at 1035, the Court reiterated that “the appropriate remedy for violations of

the ESA consultation requirements is an injunction pending compliance with the ESA.”

Here, it is unnecessary for this Court to rely on any presumption of irreparable injury,

because the presence of such injury is well established due to the unlawful and excessive taking

of SONCC Coho in 2014 and 2015 resulting from Project operations under the minimum flow

regime prescribed in the 2013 BiOp and the certainty of future imminent irreparable injury in

the absence of injunctive relief. Strange Decl., ¶¶ 6-8, 11-13; Ledwin Decl., Dkt. #44-1, ¶ 13-

21; Ledwin Second Decl., Exh. C, p. 16 (noting immediate need for increased flow measures).

Project operations in 2014 and 2015 confirmed that the minimum flow regime prescribed in the

2013 BiOp is inadequate to adequately suppress disease levels. Ledwin Decl., Dkt. 44-1, ¶ 13-

21. Continued Project operations pursuant to that flow regime, as occurred during juvenile coho

10 In Cottonwood, a majority of the three-member panel held that recent Supreme Court

decisions relating to the issuance of preliminary injunctions in NEPA cases may preclude a presumption of irreparable injury in a case involving procedural violations of the ESA. 789 F.3d at 1088-1091. The dissent in Cottonwood argued that the Ninth Circuit’s settled precedent is not inconsistent with the Supreme Court and the panel had no authority to implicitly repeal binding Ninth Circuit precedent. Id. at 1092-93. There is no en banc Ninth Circuit opinion resolving whether the long-standing presumption of irreparable injury arising from procedural violations of the ESA remains proper. The panel in Cottonwood noted that that even if the presumption of irreparable injury was no longer proper, “[i]n light of the stated purposes of the ESA in conserving endangered and threatened species and the ecosystems that support them, establishing irreparable injury should not be an onerous task for plaintiffs.” Id. at 1091.

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outmigration in 2014 and 2015, will result in unlawful take and potential jeopardy to SONCC

Coho as soon as the Spring 2017 juvenile outmigration. Id.; Strange Decl., ¶ 6-7.

1. Increased Flows Above and Beyond Those in the 2013 BiOp Are Necessary to Protect SONCC Coho From Irreparable Injury.

BOR implemented the flow regime from the 2013 BiOp in 2014 and 2015. Ledwin

Decl., Dkt. #44-1, ¶ 11-12. Project operations pursuant to only the minimum flows prescribed

in the BiOp in those years resulted in skyrocketing levels of fish infection that greatly exceeded

the maximum take levels prescribed in the 2013 BiOp and ITS. Id. Infection of fish leads to

harm and or death of a species on the brink of extinction. 2013 BiOp, pp. 220, 222, 341, 343,

350; Strange Decl., ¶¶ 6-7. Prior to implementation of the 2013 BiOp flows, no year in the

2006-2013 time-period recorded infection rates above 49%. Id. The infection rate was 81% in

2014 and 91% in 2015 due to the minimal flows released at Iron Gate Dam pursuant to the 2013

BiOp. Id. This increased infection rate correlated directly with the implementation of the 2013

BiOp flows. Id. Project operations pursuant to only the 2013 BiOp flows will continue to

produce an excessive level of infection (in excess of 50%) and corresponding take during the

Spring 2017 juvenile outmigration and could jeopardize the continued existence of SONCC

Coho. Id., ¶¶ 13-20; Strange Decl., ¶¶ 7, 11-14.

There is a demonstrated and significant correlation between low flows (such as those in

the 2013 BiOp) and increased infection rates (such as those experienced in 2014 and 2015).

Ledwin Decl., Dkt. #44-1, ¶¶ 7-11. This correlation is supported by the observation of reduced

disease infection and mortality estimates in wetter years with higher flows and vice versa. Id.,

¶¶ 11-18. The 2013 BiOp minimum flows for April, May, and June are respectively 1325 cfs,

1175 cfs, and 1025 cfs as measured at Iron Gate Dam. Id., ¶ 13. As confirmed by Project

operations in 2014 and 2015, these flow levels are demonstrably insufficient to protect fish

from increased disease levels. Id., ¶¶ 11-20. For example, in 2008 (the year with the previous

maximum disease infection rate of 49%), flows during that same time period (April – June )

were much higher than the 2013 BiOp flows - approximately 3,000 cfs from April 1 to May 1,

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2008 at Iron Gate Dam, dropping to 2,000 cfs by June 1, 2008. Id., ¶ 13. Flows prescribed in

the 2013 BiOp are insufficient to achieve the goal of reducing infection rates below 49%. Id.

Between 2006 and 2015, there were five years in which infection rates measured well

below 49%. Ledwin Decl., Dkt. #44-1, ¶ 15. In 2012, the year with the median level of disease

in those five years (30% infection rate), flows were higher than those in 2008 (49% infection

rate) and significantly higher than the minimum flows prescribed in the 2013 BiOp. Flows in

2012 approached approximately 4,000 cfs in mid and late April of that year (as compared to the

1,325 cfs level prescribed in the 2013 BiOp). Id. Flows in April, May, and June 2012 were

always higher (often significantly higher) than the minimum flows in the 2013 BiOp. Id. DTAT

recommends Spring flow releases of 3,000-4,000 cfs from Iron Gate Dam when triggers are

met to limit disease below acceptable levels. Ledwin Second Decl., Exh. C, pp. 11-12. Joshua

Strange’s declaration also identifies increased Spring flows as critical. Strange Decl, ¶ 11-13.

Federal Defendants assert that infection rates were below the maximum permitted levels

in 2016. Even if that proves true, increased precipitation and unusual events allowed BOR to

release higher flows into the river in the winter and spring of 2016 that were far in excess of the

minimum flows prescribed in the 2013 BiOp. Ledwin Decl., Dkt. #44-1, ¶ 16. This included a

controlled spill event for dam safety purposes in March 2016 that contributed to reduced

disease infection rates. Id. DTAT reported that this unusual deep flushing flow event with a

peak discharge of 11,100 cfs had a significant effect on limiting disease. Ledwin Second Decl.,

Exh. C, p. 9. This was only the second such deep flushing event in the past ten years. Id.

Thus, 2016 Project operations do not contradict Plaintiff’s argument that operating the Project

pursuant to only the 2013 BiOp flows will result in unlawful take. The 2016 data supports

Plaintiff’s argument that increased flows at Iron Gate Dam in excess of flows prescribed in the

2013 BiOp are required for BOR to avoid unlawful take of SONCC coho in Spring 2017.

The Tribe not only claims that BOR’s operation of the Project in accordance with the

2013 BiOp has unlawfully taken SONCC coho in 2014 and 2015, but also that BOR will take

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SONCC coho in the future (as soon as Spring 2017) if it is permitted to operate the Project at

the minimum flow levels authorized by the 2013 BiOp. Ledwin Decl., Dkt. #44-1, ¶ 20;

Strange Decl., ¶ 7. Based on this imminent injury to SONCC coho, the Tribe seeks injunctive

relief that would prevent BOR from operating the Project pursuant to only the 2013 BiOp flows

and mandating implementation of a flow regime, in accordance with the best available science,

that will reduce disease levels pending completion of formal consultation and a new BiOp.

2. The Tribe Seeks Implementation of Measures in the 2016 DTAT Guidance Document Pending Completion of Reinitiated Consultation.

The appropriate scope of injunctive relief relating to BOR’s violation of its consultation

obligations relating to the Klamath Project was considered in PCFFA, 138 F. Supp. 2d at 1248-

1249. In PCFFA, the Court recognized plaintiffs were entitled to an injunction as a result of

BOR’s failure to complete consultation on Project operations. Id. at 1247-1250. The Court

noted that, in cases involving procedural ESA violations, courts typically enjoin any further

project action pending compliance with consultation. Id. at 1249. Yet, in PCFFA, instead of

enjoining any further operation of the Project, the Court more narrowly enjoined BOR from

sending irrigation deliveries to the Project whenever flows in the river dropped below certain

levels identified and recommended in a scientific report submitted by plaintiffs. Id. at 1249-50.

Similarly here, Plaintiff is entitled to an injunction that would enjoin BOR from

diverting any water from the Klamath River for purposes of sending irrigation deliveries to the

Project pending reinitiation and completion of formal consultation. Id. at 1249. Yet, as in

PCFFA, Plaintiff seeks narrower injunctive relief to specifically address the imminent threat of

irreparable harm that SONCC coho are facing in the Spring 2017 juvenile outmigration.

Following the 2014 and 2015 take exceedances, DTAT convened to review the best

available science on how to reduce fish disease levels and infection rates to acceptable levels.

Ledwin Second Decl., ¶¶ 4-9. DTAT members have experience specific to the Klamath River

and its fishery, as well as the Klamath Project and its operations. Id., ¶ 4. A subgroup of

DTAT reviewed technical memoranda prepared by FWS biologists and prepared a Guidance

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Document with specific implementation recommendations for 2017 and beyond. Id., ¶ 7, 9,

Exh. C. The Guidance Document represents the best available science relating to prevention

of fish disease in the Klamath River. Id., ¶ 10; PCFFA, 138 F.2d at 1249-50. The DTAT

subgroup provided the Guidance Document to NMFS and BOR on November 9, 2016. Id.,

¶ 11. NMFS and BOR have not reinitiated formal consultation to evaluate this new information

or to incorporate it into a new BiOp and ITS. Id., ¶ 12. As with the science presented to the

Court in PCFFA, the Guidance Document is “based upon extensive input from the members of

a technical team . . . and was created specifically to address the situation which [BOR]

apparently still is confronting . . . .” PCFFA, 138 F.2d at 1249. Plaintiff seeks a narrowly

tailored injunction mandating BOR to implement flow measures identified in the Guidance

Document prior to and pending completion of reinitiated formal consultation. Id., ¶ 19.

DTAT convened to “address the critical situation and identify management guidance to

address this problem” of excessive take resulting from fish disease in the Klamath River.

Ledwin Second Decl., Exh. C, p. 1. DTAT synthesized information in the memoranda

prepared by FWS and other data to “provide management guidance intended to lower the

incidence of C. shasta in the Klamath River mainstem for both Chinook and Coho salmon.” Id.,

Exh. C, p. 2. In the Guidance Document, DTAT identified “several types of actions that could

be implemented immediately that would have a high likelihood of reducing the infection

prevalence and severity of C. shasta in the Klamath River.” Id., Exh. C., p. 4.

Measures recommended by DTAT involve release of additional flow into the Klamath

River from Iron Gate Dam above and beyond the minimum flow levels in the 2013 BiOp.

Ledwin Second Decl., ¶ ¶ 19-20. The Guidance Document calls for: (a) surface flushing flows

during the winter period (Nov. 1 – April 30) of no less than 6,030 cfs from Iron Gate Dam for a

72 hour period for the purpose of moving surface sediments that provide habitat for disease

hosts; (b) deep flushing flows during the period of Feb. 15 to May 31 of no less than 11,250 cfs

from Iron Gate Dam for a period of at least six hours in 2017; and (c) reservation of 50,000

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acre-feet of water for purposes of implementing spring disease dilution and disruption flows if

certain disease triggers are met. Id., Exh. C, pp. 7-11.11 As support for this last measure,

DTAT stated that: “Reduced spring flows exacerbate the transmission of actinospores to

rearing and migrating juvenile fish, causing significant population level impacts. Flow

increases can play an important role in mitigating C.shasta, with greater water volumes and

velocities resulting in reduced disease transmission.” Id., Exh. C, p. 11. DTAT recognized a

direct correlation between increased flows and reduced disease levels. Id., Exh. C, p. 11-12.

“Spring flows similar to average natural flow conditions are required to make meaningful

reductions in C. shasta transmission during critical outmigration periods.” Id., Exh. C, p. 11;

Strange Decl., ¶¶ 10-13 (describing importance of Spring dilution flows to reduce disease).

DTAT recommends the proposed measures be implemented immediately, in advance of

the 2017 juvenile outmigration, and in subsequent years. Id., Exh. C, pp. 4, 16. DTAT, in

compiling and reviewing the best available science, concluded that “the technical memoranda

developed by the DTAT clearly demonstrate that disease rates can best be controlled by

disrupting the habitat of M. speciosa and diluting C. shasta spores with increased flows.” Id.,

Exh. C, p. 16. This is consistent with NMFS’ own conclusions in the 2013 BiOp as well as the

historic data showing the correlation between flow and disease incidence. Ledwin Decl., Dkt.

#44-1, ¶¶ 13-21; Strange Decl., ¶¶ 8-12. DTAT concluded by stressing the need for immediate

implementation, stating that “Klamath fisheries are in dire need of measures to alleviate high

disease rates immediately.” Ledwin Second Decl., Exh. C, p. 16; Strange Decl., ¶¶ 7, 12-14.

3. An Injunction Is Necessary As Soon As Possible to Prevent Imminent Harm And Must Remain In Place Pending Completion of Consultation.

An injunction to prevent continued harmful operations pending completion of re-

11 DTAT recommends release of other high magnitude flows to move gravel and provide

large-scale disruption of polychaete colonies when possible, but DTAT did not provide specific recommendation for flow magnitude or duration for this measure. DTAT also recommended a fall/early winter flushing flow, which BOR implemented in November 2016.

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initiated consultation is critical given the substantive mandate imposed on federal agencies by

Section 7(a)(2) of the ESA to insure that their actions are not likely to jeopardize the continued

existence of endangered or threatened species. 16 U.S.C. § 1536(a)(2); Strange Decl., ¶ 7, 12-

14. Consultation with the Secretary (here, NMFS) is the procedural mechanism put in place to

ensure that no harm will occur to species a result of federal agency actions. Karuk Tribe v. U.S.

Forest Service, 681 F.3d 1006, 1020 (9th Cir. 2012); Wash. Toxics Coalition, 413 F.3d at 1035

(“the appropriate remedy for violations of the ESA consultation requirements is an injunction

pending compliance with the ESA”); Sierra Club, 816 F.2d at 1384 (“Only by requiring

substantial compliance with the act’s procedures can we effectuate the intent of [Congress].”)

The ESA prohibits federal agencies from making “any irreversible or irretrievable commitment

of resources . . . which has the effect of foreclosing the formulation or implementation of any

reasonable and prudent alternative measures” during completion of consultation. 16 U.S.C.

§1536(d); 50 C.F.R. § 402.09. Where re-initiation of consultation is required, courts regularly

enjoin further agency action pending completion of formal consultation and finalization of a

new BiOp. Alliance for Wild Rockies v. Krueger, 950 F. Supp. 2d 1196, 1217 (D. Montana

2013) (enjoining federal project pending completion of reinitiated consultation); Defenders of

Wildlife v. Martin, 454 F. Supp. 2d 1085, 1098-99 (W.D. Wash. 2006) (granting request to

prohibit all snowmobiling and trail grooming within federally managed caribou habitat pending

completion of reinitiated consultation based on evidence of past takes and likelihood of future

harm over objections of federal agencies and intervenors that a more narrow injunction would

be adequate); Greenpeace v. NMFS, 80 F. Supp. 2d 1137, 1152 (W.D. Wash. 2000) (court

retains authority to enjoin action pending completion of reinitiated consultation).

An injunction prohibiting operation of the Project pursuant to only the minimum flow

regime in the 2013 BiOp and requiring additional flows to limit disease in accordance with the

best available science must be in place prior to March 1, 2017 in order to prevent imminent and

irreparable harm to SONCC coho in the Klamath River. Ledwin Second Decl., ¶ 15; Strange

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Decl., ¶ 7. NMFS acknowledges SONCC coho populations in the Klamath River are at high

risk of extinction. Id., ¶ 13; 2013 BiOp, at pp. 312, 327; Strange Decl., ¶¶ 6-7. Injunctive relief

sought by the Tribe here is necessary to ensure that BOR delivers adequate water to SONCC

coho in accordance with the best available science to prevent excessive levels of disease when

substantial numbers of fish are in the mainstem Klamath River. Ledwin Second Decl., ¶ 15.

Plaintiff proposes a narrowly tailored injunction mandating operation of the Project to provide

additional flow releases described in the Guidance Document pending completion of reinitiated

formal consultation. Alternatively, if the Court declines to order implementation of the DTAT

measures, Plaintiff seeks an injunction prohibiting BOR from diverting or using any water from

the Klamath River for the purpose of providing any irrigation deliveries to the Project prior to

and during the Spring 2017 outmigration pending completion of reinitiated formal consultation.

VI. CONCLUSION

There is no genuine dispute of fact regarding Federal Defendants’ failure to reinitiate

formal consultation based on the take exceedances in 2014 or 2015 or their legal duty to do so.

Plaintiff is entitled to summary judgment on its first claim for relief against NMFS and BOR.

To prevent imminent and irreparable injury to SONCC coho, Plaintiff is entitled to an order

enjoining any further irrigation deliveries to the Klamath Project prior to and pending

completion of reinitiated formal consultation or alternatively an order requiring immediate

implementation of the flow measures contained in the 2016 DTAT Guidance Document, which

represent the best available science on reduction of fish disease levels in the Klamath River.

Respectfully submitted this 1st day of December, 2016.

MORISSET, SCHLOSSER, JOZWIAK & SOMERVILLE /s/ Thomas P. Schlosser Thomas P. Schlosser WSBA #06276 Attorneys for the Hoopa Valley Tribe

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CERTIFICATE OF SERVICE

I hereby certify that I electronically filed the foregoing document, Hoopa Valley Tribe’s

Notice of Motion, Motion for Partial Summary Judgment and Injunctive Relief, and

Memorandum in Support of Motion for Partial Summary Judgment and Injunctive Relief, with

the Clerk of the Court for the United States District Court for the Northern District of

California by using the CM/ECF system on December 1, 2016. I certify that all participants in

the case are registered CM/ECF users and that service will be accomplished by the appellate

CM/ECF system on December 1, 2016.

Executed this 1st day of December, 2016, at Seattle, Washington.

MORISSET, SCHLOSSER, JOZWIAK & SOMERVILLE

s/Thomas P. Schlosser Thomas P. Schlosser

T:\WPDOCS\0020\09773\Reinit\Memorandum in Support of Motion_02.docx tds:12/1/16

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