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CHAPTER 1 A micro review on fluoroquinolones, hetero ring fused quinolones and benzimidazoles
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  CHAPTER 1

A micro review on fluoroquinolones, hetero ring fused quinolones and

benzimidazoles

 

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Chapter 1 Introduction

1.1.0 Quinolones:

1.1.1 Introduction:

The German bacteriologist Paul Ehrlich and his student Sahachiro Hata developed Salvarsan

in 1910 for the treatment of Syphilis, and this was the first synthetic chemotherapeutic agent.

Alexander Fleming isolated Penicillin in 1929 which was the world first antibiotic from

penicillium notatum. At the same time the first sulfa drug was synthesised, and Streptomycin

(an antituberculosis agent), Tetracycline and other antibiotics with excellent antimicrobial

efficacy were found one after another.

After a gap of 30-40 years quinolones were found as new class of compounds widely

prescribed for the treatment of infections in humans. Currently quinolones are the most

interesting group of antibacterial drugs made a major impact on the field of antimicrobial

chemotherapy with broad spectrum of activity.

Structurally, the quinolones consist of 1-substituted-1, 4-dihydro-4-oxo pyridine-3-carboxylic

moiety A combined with an aromatic ring B fused at the 5-and 6-positions.

The first lead structure 7-chloro-1-ethyl-1, 4-dihydro-4-oxo-3-quinolin carboxylic acid1 was

discovered accidentally as a by-product which is a regio isomer of ethyl-7-chloro-4-hydroxy-

3-quinoline carboxylate (Chloroquine intermediate).

The evolution of quinolones started from the discovery of Nalidixic acid in 1962 by George

Lescher as a part of his antimalarial program.2 Fluoroquinolones became neglected group of

antimicrobials till 1970s to early 1980s. Latter they have dominated the market as most

potent antimicrobial agents.

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Chapter 1 Introduction

A series of rather more potent agents were introduced such as Oxolinic acid,3 more effective

against both Gram positive and Gram negative than Nalidixic acid, Piromidic acid4 was

relatively similar to Nalidixic acid in its spectrum and applications, Pipemidic acid5 has

broader antimicrobial spectrum than Nalidixic acid, Cinoxacin6 has a cinnoline ring rather

than a pyridone ring and it was a bio ester of Oxolinic acid, it has negligible activity against

Gram positive microorganism.

1.1.2 Fluoroquinolones.

In 1978’s Norfloxacin was discovered in Japan and changed the level of enthusiasm towards

Quinolones. It was a better choice than previous agents against gram negative and gram

positive activity. Norfloxacin had a longer half life than earlier compounds (3-4 h), less

protein binding (50%) and improved gram negative activity.7 The addition of a fluorine atom

at 6th position of quinolone resulted 10 fold increase in gyrase inhibition and upto 100 fold

improvement in MIC.

Recently, more focus was given for the synthesis of quinolones, and as on today over 10,000

molecules have been patented. Most important among the fluoroquinolones was

Ciprofloxacin.8 Ciprofloxacin, not only possesses significant anti gram negative and gram

positive activity but also active clinically against Anaerobes, Pseudomonad’s, Enterobacter,

Chlamydia, Rickettsiae and also active against P. aeruginosa and Acinetobacter spp. It is

very active against Haemophilus influenzae, Moraxella catarrhalis and Neisseria spp.,

including β-lactamase producing strains of Neisseria gonorrhoeae. Subsequently several

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Chapter 1 Introduction

fluoroquinolones entered with fluorine and piperazinyl moieties at 6 and 7 positions namely

Pefloxacin and Ofloxacin,9 revolutionized the chemistry of fluoroquinolones.10,11

N

OCOOH

NEtHN

Norf loxacin

N

OCOOH

NMeN

Ofloxacin

F

N

OCOOH

NHN

Ciprof loxacin

F

N

OCOOH

NEtMeN

Pefloxacin

F

F

OHMe

In continuation of the search for new fluoroquinolones, Levofloxacin was synthesized and

patented by Daiichi Seiyaku Co., Ltd., Tokyo, Japan in 1987. After thorough clinical trials it

was introduced into the market as an anti bacterial drug with trade name of Cravit® in 1993.

Levofloxacin is the optical isomer of Ofloxacin and found to be high potent drug than

Ofloxacin, Ciprofloxacin and other antibacterial agents.12 Levofloxacin also acts against most

strains of bacterial pathogens for respiratory, urinary tract, gastrointestinal, and abdominal

infections. Thiadiazole and benzotriazole tagged Levofloxacin (1, 2) derivatives are also very

active against various bacterial strains. These two derivatives are low potent than

Levofloxacin and more active than Ofloxacin.13

N

OCOOH

NMeN

Levofloxacin

F

ON

O

NMeN

F

OMe

N

O

NMeN

F

O

Me

Me

NH

O

S

NNNH2

Levofloxacin-1

NH

ON N

N

Levofloxacin-2

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Chapter 1 Introduction

The scientists continued their efforts towards developing more potent fluoroquinolones for

multi drug resistant gram-positive bacteria during the past decade. As a result of these efforts

Gatifloxacin,14 Moxifloxacin,15 Trovafloxacin16 and Gemifloxacin17 drugs were made

commercially available in the market. Gatifloxacin and Moxifloxacin in particular are being

used for the treatment of community-acquired pneumonia caused by streptococcus

pneumonia, including PRSP.

1.1.3 Hetero ring fused fluoroquinolones:

The antibacterial activity of 4-quinolones depends on the nature of peripheral substituent’s

and their spatial arrangements. Hetero ring fused quinolones between N-1 to C-2 positions

with dihydro thiazole and benzothiazoles18-20 showed good anti bacterial activity against

various bacterial strains but no clinical study on these compounds were reported. Though the

carboxylic acid group at C-3 position is essential for antibacterial activity, the replacement of

-COOH group by isothiazolo ring between 2 and 3 positions was found to be more active

than Ciprofloxacin in vitro studies. 21

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Chapter 1 Introduction

 

The furan fused quinolones at 6, 7 and 7, 8 positions of quinolones also showed promising

activity.

                         

The hetero ring fused tri and tetra cyclic fluoroquinolones showed excellent activity against

various bacterial strains.22, 23 Ofloxacin is one of the prominent members of benzoxazine 1, 8

bridged quinolones and well accepted in clinical practice.24 Other 1, 8 -bridged fluoro

quinolone derivatives also showing good antibacterial activity.

 

 

 

 

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Chapter 1 Introduction

1.1.4 Classification of quinolone antibiotics:

Quinolone antibiotics are broadly classified into four generations based on their antibacterial

spectrum as indicated below.

Classification Agents Antimicrobial spectrum General clinical indications

First

generation

Nalidixic acid

(NegGram)

Gram-negative organisms (but

not Pseudomonas species)

Uncomplicated urinary tract

infections

Cinoxacin

(Cinobac)

Second

generation

Norfloxacin

(Noroxin)

Gram-negative organisms

(including Pseudomonas

species), some gram-positive

organisms (including

Staphylococcus aureus but not

Streptococcus pneumoniae) and

some atypical pathogens

Uncomplicated and

complicated urinary tract

infections and pyelonephritis,

sexually transmitted diseases,

prostatitis, skin and soft

tissue infections

Lomefloxacin

(Maxaquin)

Enoxacin

(Penetrex)

Ofloxacin

(Floxin)

Ciprofloxacin

(Cipro)

Third

generation

Levofloxacin

(Levaquin)

Same as for second-generation

agents plus expanded gram-

positive coverage (Penicillin-

sensitive and penicillin-resistant

Acute exacerbations of

chronic bronchitis,

community-acquired

pneumonia

Sparfloxacin

(Zagam)

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Chapter 1 Introduction

Gatifloxacin

(Tequin)

S. pneumoniae) and expanded

activity against atypical

pathogens Moxifloxacin

(Avelox)

Fourth

generation

Trovafloxacin

(Trovan)

Same as for third-generation

agents plus broad anaerobic

coverage

Same as for first-, second-

and third-generation agents

(excluding complicated

urinary tract infections and

pyelonephritis) plus intra-

abdominal infections,

nosocomial pneumonia,

pelvic infections

___________________________________________________________________________

1.1.5 Preparation of fluoroquinolones:

General methods of preparation of quinolones are briefly outlined below.

a) Gould-Jacobs method:

3-Chloro-4-fluoro aniline was reacted with diethyl 2-(ethoxymethylene) malonate to give

diethyl 2-((3-chloro-4-fluorophenylamino) methylene) malonate. The latter on cyclisation at

250 oC (in high boiling non-polar solvent; diphenyl ether) furnished 4-hydroxyquinoline. The

alkylation of hydroxyquinolines with alkyl halide followed by hydrolysis of ester afforded N-

alkyl quinolone-3-carboxylic acid derivative. The reaction of a secondary amine with N-alkyl

quinolone produced 6-fluoro-7-secondary aminoquinolone. This method is commercially

applicable for the synthesis of Norfloxacin25 and their derivatives.

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Chapter 1 Introduction

 

b) Ullmann-type cyclisation:

2, 4-Dichloro-5-fluoro-benzoyl chloride was reacted with magnesium salt of diethyl malonate

gave diethyl 2-(2, 4-dichloro-5-fluoro-benzoyl)propanedioate. The latter compound in p-

toluenesulfonic acid and water at refluxing temperature furnished ethyl 3-(2, 4-dichloro-5-

fluoro-phenyl)-3-oxo-propanoate. The keto ester on heating with triethyl ortho formate in

acetic anhydride afforded ethyl (Z)-2-(2, 4-dichloro-5-fluoro-benzoyl)-3-ethoxy-prop-2-

enoate. The latter on condensation with cyclopropyl amine in ethanol gave ethyl 7-chloro-1-

cyclopropyl-6-fluoro-4-oxo-quinoline-3-carboxylate. The amino compound was treated with

sodium hydride and DMF to produce cyclized product quinolone which was further

hydrolyzed using sodium hydroxide-water in refluxing dioxane to give 7-chloro-1-

cyclopropyl-6-fluoro-4-oxo-quinoline-3-carboxylic acid. The final step involves reacting

quinolone carboxylic acid with piperazine in dimethylsulfoxide at higher temperature to

afford 1-cyclopropyl-6-fluoro-1, 4-dihydro-4-oxo-7-(1-piperazinyl)-3-quinolinecarboxylic

acid also called as Ciprofloxacin.26 This method is very useful for the synthesis of

Ciprofloxacin, Tosufloxacin and Trovafloxacin type of N-1 cyclopropyl and N-1 aryl

substitution fluoroquinolones.

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Chapter 1 Introduction

c) Preparation of 6-membered hetero ring fused quinolones:

Levofloxacin: Levofloxacin27 was launched in 1993 by Daichii pharmaceutical industry in

Japan with trade name of Cravit®, as the world’s first optical active antibacterial quinolone.

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Chapter 1 Introduction

10 

d) 7, 8 and 1, 8 imidazo fused quinolones preparation:

3-Chloro-4-fluro aniline was reacted with diethyl 2-(ethoxymethylene) malonate to give

diethyl 2-((3-chloro-4-fluorophenylamino) methylene) malonate. The latter on cyclisation at

250 oC (in high boiling non-polar solvent; diphenyl ether) furnished hydroxyquinoline. Then

nitration of hydroxyquinoline with H2SO4/HNO3 mixture afforded ethyl 7-chloro-6-fluoro-4-

hydroxy-8-nitroquinoline-3-carboxylate and replacement of the chlorine atom with

methylamine afforded 6-fluoro-4-hydroxy-N-methyl-7-(methylamino)-8-nitroquinoline-3-

carboxamide. The nitro group was converted into amine in the presence of Pd/C-H2 furnished

8-amino-6-fluoro-4-hydroxy-N-methyl-7-(methylamino)quinoline-3-carboxamide, and this

diaminoquinoline was reacted with aldehyde gave two products which are 7, 8 imidazo fused

quinolines and 1, 8 imidazo fused quinolones.28

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Chapter 1 Introduction

11 

NH2

F

Cl

F

Cl NH

O

O

OO

N

OH

O

OF

Cl

N

OH

O

OF

ClNO2

N

OH

NH

OMeF

NH NO2

Me

N

OH

NH

OMeF

NH NH2

MeN

OH

NH

OMeF

N

O

NH

OMeF

NN

Me

RN

NH

Me

R

a) EMME,130 oC, 2 h; b) PhOPh, 250 oC, 1 h; c) HNO3 + H2SO4, 5 h; d) Me-NH2, 30 oC,

48 h; e) Pd / C, H2 gas, RT; f) R-CHO, AcOH, 100 oC, 3.5 h.

a b

c

de

f

1.1.6 Fluoroquinolones, their mechanism of action:

Topoisomerase enzymes are important to DNA replication process.29 Bacterial cells have two

essential topoisomerases which are gyrase and topoisomerase IV. DNA is normally

maintained in a super coiled state and in the replication process DNA must be uncoiled,

which can lead to links and breaks throughout the stand. Bacterial DNA gyrase

(topoisomerase-ІІ) breaks to the DNA stands, separates them and reseals the DNA stands in

the DNA replication process. Fluoroquinolones can damage to the DNA gyrase, as a result

leads to the DNA destruction.30, 31 Mammalian species also depend on topoisomerase for

DNA replication, but fluoroquinolones have a greater selectivity for bacterial DNA gyrase

than for mammalian DNA gyrase.

In addition to DNA gyrase fluoroquinolones have a secondary target topoisomerase-ІV.32

This enzyme mediates relaxation of DNA was involved in the unliking of daughter

chromosomes after replication. Disturbance of the action of this enzyme allows the bacterial

DNA to be trapped after replication, leading to cell death. Inhibition of DNA gyrase was

primarily associated with gram negative bacteria, where as inhibition of topoisomerase-ІV

targets gram-positive bacteria.

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Chapter 1 Introduction

12 

1.1.7 Fluoroquinolones pharmacological aspects:

Fluoroquinolones have the favourable pharmacokinetics compare to the other antibacterial

agents. The primary advantages of quinolones are the good oral bioavailability and the

protein binding in human ranges from 30-100% and 14-32% respectively. Fluoroquinolones

can also be administered intravenously so that they are readily distributed to tissues and

penetrate well into cell and body fluids. Ciprofloxacin, Pefloxacin and Ofloxacin are also

available in the form of intravenous formulations also.

The fluoroquinolones are used for the treatment of complicated and uncomplicated urinary

tract infections and some drugs are used for the administration of gastrointestinal infections

due to their activity against gram-negative bacteria, particularly multiple resistant Shigella

spp, and Salmonella spp. Newer fluoroquinolones are highly useful for the treatment of

various bacterial infections like intra-abdominal infections, nosocomial pneumonia and pelvic

infections.

Fluoroquinolones distribution is very interesting into respiratory tract tissues and fluids, due

to their activity against common respiratory pathogens. These interesting characters may be

useful for the future role in the treatment of bacterial meningitis.33, 34

1.1.8 Fluoroquinolones resistance:

Fluoroquinolone resistance has increased significantly over the past decade, exceeding 25%

resistance in outpatient E. coli samples in some areas. The resistance rate to either

Ciprofloxacin or to Levofloxacin increased from 2.8% (1998–2003) to 11.8% (2004–2007) in

Taiwan and about 25% of healthy individuals living in Barcelona were found to be

intestinally colonized with quinolone-resistant E. coli.

Exposure to antibiotics and incomplete suppression of bystander bacteria can lead to

resistance; this may lead to a poor response to antimicrobial therapy during the next

exposure. Quinolones are showing resistant against gram-positive and gram-negative

bacteria.35 This resistance appears to be the result of one of three mechanisms: alterations in

the quinolone enzymatic targets (DNA gyrase), decreased outer membrane permeability or

the development of efflux mechanisms. An intensive research was under progress worldwide

to get new class of fluoroquinolones to overcome the resistance problem.

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Chapter 1 Introduction

13 

1.2.0 Benzimidazoles:

The development of antimicrobial agents to treat infections has been one of the most

important medical accomplishments of the past century. Despite significant progress in

antimicrobial therapy, infectious diseases caused by bacteria and fungi remain a major

worldwide health problem due to the rapid development of resistance to the existing

antimicrobial drugs. The increased use of antibacterial and antifungal drugs in recent years

has resulted in the development of resistance to these agents36-38 and possible microbial

implications for morbidity, mortality and health care costs have become a serious fear. Even

though, there are large numbers of antimicrobial drugs available for medical use, there will

always be a vital need to discover new agents due to antimicrobial.39, 40

The benzimidazole ring is an important pharmacophore in modern drug discovery and their

synthesis remains a main focus of medicinal research. The benzimidazole ring system as a

nucleus from which to develop potential chemotherapeutic agents was established in 1950s

when it was found as an integral part of the structure vitamin B12.41, 42 The discovery of

thiabendazole43 in 1961 further spurred chemists around the world to design and synthesize

several thousands of benzimidazole molecules for anthelmintic activity and they are very

important intermediates in organic reactions. 44

1.2.1 Importance of benzimidazole derivatives:

a) Antiulcer agents:

The presence of acid is a fundamental factor in the pathogenesis of gastric and duodenal

ulcers, reflux-oesophagitis and nonsteroidal anti-inflammatory drug-induced lesions.45 In

human body many tissues are responsible for the imbalance between aggressive factors (like

acid, pepsin, H. pylori infection) and local mucosa defense (secretion of bicarbonates, mucus

and prostaglandin) results in acid-peptic and duodenal ulcer, gastroesophageal reflux disease,

Zolinger-ellision syndrome and gastritis. This disease seems to have very prominent share in

health disorder in current scenario of globalization.

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Chapter 1 Introduction

14 

 

 

b) Antipsychotic agents:

Benzimidazoles containing piperdinyl moiety46 are useful as antipsychotic agents and as

analgesic.

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Chapter 1 Introduction

15 

c) Antihelmintic drugs:

Benzimidazoles are most promising drugs as antihelmintic agents. Thiabendazole and

mebendazole are highly effective as broad-spectrum antihelmintic agents. They are used for

the treatment of nematode infestations and treatment of proto myxzoa infestations.

Albendazole is effective against roundworms, tapeworm and flukes of domestic animals and

human.

d) Antimicrobial and fungicidal drugs:

Infectious diseases have been serious and growing threatens to human health during the past

few decades. Several research groups are working in this direction with a focus to prepare or

invent new class of drugs which can withstand to bacterial resistance strains. Fluconazole is

the first line of triazole based antifungal drug recommended by WHO duo to its

pharmacokinetics characteristics. Tri halogen benzimidazoles exhibited the most potent

antibacterial activity with MIC 3.12 μg/ml against S. aureus.47 Number of benzimidazole

derivatives have commercial application for fungal infections.

N

N

NH

NNH

OMeO

ONH

Me

Cl

Benomyl Chlormidazole

F

F

NOH

N

NN

NN

Fluconazole

e) Anti hypertensive drugs:

Benzimidazoles are considered as promising as anti hypertensive drugs.48 Adimol is an anti

hypertensive agent which acts as anon selective α1-, α2-, β-adrenergic receptor antagonist.

Azilsartan medoxomil and Candesartan are acts as angiotension-ІІ receptor antagonist, which

are benzimidazole nucleus containing compounds.

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Chapter 1 Introduction

16 

NH

NO

HN

OHO

Adimolol

N

NO

O

NHN

NN

HO

Candesartan  

f) Anti-inflammatory drugs:

Some of the benzimidazole derivatives act as anti inflammatory agents, like VUF-6002 a

potent and selective antagonist at the histamine H4 receptor.49 It has anti-inflammatory and

analgesic effects in animal studies of acute inflammation.50

g) Antidiabetic drugs:

Rivoglitazone is a thiazolidine dione which contain benzimidazole nucleus was under the

research for the use in the treatment of type-ІІ diabetes.51

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Chapter 1 Introduction

17 

h) Antiviral drugs:

Maribavir is an oral anti viral drug which is the benzimidazole derivative; it is used for the

prevention and treatment of human cytomeglo virus (HCMV) disease in hematopoietic stem

cell/ bone marrow transplant patients. The mechanism by which inhibits HCMV replication is

by inhibition of an HCMV encoded protein kinase enzyme called UL97 or pUL.52

1.2.2 Importance of imidazole ring:

● Imidazoles are playing key role as synthons or as end products in medicinal chemistry.

● Imidazoles are forming hydrogen bonds with targets which is very important for drugs.

● Fusing or tagging of these imidazoles, the size variations of quinolones are very small.

● Imidazoles may be increasing lipophilicity of the drugs due to their hydrogen bonds.

1.3.0 Importance of trifluoromethyl group:

● Electro negativity of trifluoromethyl group is intermediate between Cl and F.53

● Lipophilicity parameters of CF3 group are more than Cl and F.

● Trifluoromethyl group increases the lipophilicity and drug stability.

● Fluorinated derivates often exhibit improved bioavailability.

● Increased lipophilicity leading to a smaller effective dose.54

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Chapter 1 Introduction

18 

1.4.0 Current strategies:

The major problem in the recent times was the resistance of bacterial strains towards certain

fluoroquinolones and other antibacterial agents across the world. In order to meet this

problem several strategies were planned to synthesize new class of compounds such as

combination of two active pharmacophores to make the hybrid molecules or fusion of two

active ring systems to make hetero ring fused bioactive molecules. The hybrid molecules

concept was first adopted by Lescher55 and his co-workers for antimalarial activity with an

idea that presence of two pharmacophores in single molecule may enhance the activity. Other

strategy was to prepare hetero ring fused quinolones such as isothiazolo fused, furon fused,

imidazole fused fluoroquinolones at 1, 2 or 2, 3 or 5, 6 or 1, 8 positions of quinolones moiety.

In some cases enhanced activity was found than the standard Ciprofloxacin.

1.5.0 Present work:

Present work has been designed for the preparation of novel imidazo fused quinolones and

evaluation of their activity was conveniently divided in to 6 chapters:

Chapter 1: This chapter describes a micro review of various antibacterial drugs, discovery

and antibacterial activity of quinolones, fluoroquinolones and hetero ring fused quinolones,

mechanism of action, pharmacological aspects of fluoroquinolones. It also covers the

introduction about the benzimidazoles and their medicinal importance.

Chapter 2: The second chapter deals with the preparation of benzimidazoles, separation and

characterisation of positional isomers of 1-alkyl-2-perfluoroalkyl-5 or 6-substituted

benzimidazoles. Experimental procedures adopted for the above compounds. The activity

studies are included in chapter-6.

Chapter 3: Chapter three describes the synthesis of imidazole ring fused quinolones, and

their characterisation, influencing factors for formation of angular (5, 6-imidazo fused) form

of imidazo fused quinolones. Experimental procedures adopted for the imidazofused

quinolone derivatives. The activity data was included in chapter-6.

Chapter 4: This chapter deals with the importance of amide bond in medicinal research,

preparation of imidazo fused quinolone carboxamides and preparation of linear (6, 7-imidazo

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Chapter 1 Introduction

19 

fused) form of imidazo fused quinolone and it’s characterization. Experimental procedures

are also included. The activity data of compounds are included in chapter-6.

Chapter 5: The method development for the N-alkylation of amines using alcohols as

alkylating agents, mechanistic aspects are described. Environmentally benign method for the

preparation of benzimidazoles and experimental procedures were described.

Chapter 6: This chapter covers the introduction about the anti bacterial agents, evaluation of

the compounds synthesized in chapter-2, chapter-3 and chapter-4 for their anti bacterial

activity, supporting data by molecular modelling studies. 

1.6.0 References & notes:

1. L. A. Mitscher, R.M. Zavod, P. V. Devasthale, D. T. W. Chu, L. L Shen, P. N.

Sharma and A. G. Pernet, Chemtech., 1991, 21, 50-56.

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