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Proc. Nat. Acad. Sci. USA Yol. 71, No. 5, pp. 1612-1617, May 1974 Chemical Carcinogens as Frameshift Mutagens: Salmonella DNA Sequence Sensitive to Mutagenesis by Polycyclic Carcinogens (histidinol dehydrogenase/electrophoresis/repeating doublet DNA sequence/amino-acid sequences) KATSUMI ISONO* AND JOSEPH YOURNOt Biology Department, Brookhaven National Laboratory, Upton, New York 11973 Communicated by Bruce N. Ame8, January 21, 1974 ABSTRACT Other investigators have shown that several polycyclic carcinogens are frameshift mutagens in Salmonella. Mutagenic potency of these compounds is assessed by ability to induce reversion of histidine-requir- ing frameshift mutants to prototrophy. One frameshift mutation in the histidinol dehydrogenase gene, hisD3052, is unusually sensitive to mutagenesis by certain polycyclic carcinogens. We find that the 3052 mutation is a -1 dele- tion, probably loss of a G C pair from a DNA repeat of -G-G-G- -C-C-C-. The polycyclic carcinogens tested (e.g., 2-nitroso- -G-C- fluorene) revert 3052 by deleting a -C-G- doublet from the -C-G-C-G-C-G-C-G- DNA sequence -G-C-G-C-G-C-G-C-, which is close to the 3052 site. This rare mispairing-prone sequence represents. the carcinogen-sensitive "hotspot" in 3052. The ICR com- pounds, noncarcinogenic intercalating agents, show a broader specificity of mutagenesis. Reversion with these mutagens occurs predominantly by two mechanisms: one identical to that of the polycyclic carcinogens, and the other by +1 additions in a third DNA tract narrowly separated from the 3052 site. The alkylating carcinogen N-methyl-N'-nitro-N-nitrosoguanidine appears to have a similar dual specificity. DNA base changes in 3052 rever- tants have been correlated with properties of histidinol dehydrogenase in crude extracts. This correlation of DNA base sequence with electrophoretic and other properties of the mutant proteins allows one to analyze easily the specificity of new mutagens that mutate this strain. The concept of carcinogenesis as an expression of mutation in DNA has been revived in recent years (1-6). Mutations are of several types: base substitutions, frameshifts, and larger lesions. To type mutations induced by chemical carcinogens, Ames and his coworkers have been developing tester systems with the bacterium Salmonella (2, 3). The basis of their ap- proach is scoring carcinogen-induced reversion to histidine independence of histidine-requiring tester strains. Each tester strain carries a known type of mutation. Reversion requires a Abbreviations: NF, 2-nitrosofluorene; HC, hycanthone; NQ, nitroquinoline-N-oxide; NG, N-methyl-N'-nitro-N-nitroso- guanidine. * On leave from the Laboratory of Genetics, University of Tokyo, Japan. Present address: Max-Planck-Institut fur Molekulare Genetik, Abt. Wittmann, 1 Berlin 33 (Dahlem), Ihnestrasse 63-73, West Germany. t Present address: Dept. of Pathology, University of Rochester Medical Center, Rochester, N.Y. 14620. To whom reprint re- quests should be addressed. 1612 compensating mutation, almost invariably of the same general type as the original; i.e., base substitutions are corrected by base substitutions, frameshifts by frameshifts. In particular, the Ames group has shown that many polycycic compounds with reactive side groups, interpreted as proximal carcinogens, are frameshift mutagens in Salmonella (3-6).:One tester strain, TA1538, containing the frameshift mutatioi hisDS052, is un- usually sensitive to reversion by many -of these carcinogens; reversion is enhanced many-fold over-the spontaneous fre- quency (3-5). Our interest in examining DNA sequences in 3052 and its revertants was stimulated by Ames. We now re- port on the unusual base sequence of a carcinogen-sensitive DNA tract in 3052. Frameshift mutations result from additions (+) or dele- tions (-) of DNA base pairs from genes encoding polypeptide chains, so that triplets in the product mRNA are not read in the correct frame after the mutation (7, 8). Correction of such mutations may occur by restoration of the original base se- quence, or by introduction of a closely positioned frameshift of opposite sign. In these double frameshift mutants (+ -) the normal reading frame is restored in mRNA except for the segment between the two frameshifts. The (+ -) mRNA segment encodes a segment of altered amino acids in the polypeptide chain, often disturbing its function. Sequencing the affected polypeptide segment allows reconstruction of associated mRNA and DNA sequences (9, 10). The hisD gene encodes the enzyme histidinol dehydro- genase (EC 1.1.1.23). To determine nucleic acid base changes in 3052 caused by polycyclic carcinogens and other frameshift mutagens, we have induced reversion in 3052 by these com- pounds. Revertants carrying double frameshift mutations were detected by rapid screening of crude extracts from rever- tants for altered histidinol dehydrogenase. The altered en- zyme from each double mutant was then purified and com- pared with the normal enzyme by peptide mapping to detect altered peptides. These were sequenced to reconstruct al- tered DNA sequences in 3052 and its revertants. We have also classified the reversions with respect to certain properties of histidinol dehydrogenase from crude extracts, and have correlated the classes of reversion with specific DNA sequence changes. We believe that this newly characterized tester system will be useful for rapid screening of carcinogens as frameshift mutagens. For the relatively small effort of inducing reversions in 3052 with carcinogens or other mutagens and examining crude extract histidinol dehydrogenase, it should be possible to assign the reversions to the standard groups with known base sequence changes in DNA (see below).
Transcript
Page 1: Chemical Carcinogens as Mutagens: Salmonella DNA Sequence ... · broader specificity of mutagenesis. Reversion with these mutagensoccurspredominantlybytwomechanisms:one ... Genetik,

Proc. Nat. Acad. Sci. USAYol. 71, No. 5, pp. 1612-1617, May 1974

Chemical Carcinogens as Frameshift Mutagens: Salmonella DNA SequenceSensitive to Mutagenesis by Polycyclic Carcinogens

(histidinol dehydrogenase/electrophoresis/repeating doublet DNA sequence/amino-acid sequences)

KATSUMI ISONO* AND JOSEPH YOURNOtBiology Department, Brookhaven National Laboratory, Upton, New York 11973

Communicated by Bruce N. Ame8, January 21, 1974

ABSTRACT Other investigators have shown thatseveral polycyclic carcinogens are frameshift mutagens inSalmonella. Mutagenic potency of these compounds isassessed by ability to induce reversion of histidine-requir-ing frameshift mutants to prototrophy. One frameshiftmutation in the histidinol dehydrogenase gene, hisD3052,is unusually sensitive to mutagenesis by certain polycycliccarcinogens. We find that the 3052 mutation is a -1 dele-tion, probably loss of a G C pair from a DNA repeat of-G-G-G-

-C-C-C-. The polycyclic carcinogens tested (e.g., 2-nitroso--G-C-

fluorene) revert 3052 by deleting a -C-G- doublet from the-C-G-C-G-C-G-C-G-

DNA sequence -G-C-G-C-G-C-G-C-, which is close to the3052 site. This rare mispairing-prone sequence represents.the carcinogen-sensitive "hotspot" in 3052. The ICR com-pounds, noncarcinogenic intercalating agents, show abroader specificity of mutagenesis. Reversion with thesemutagens occurs predominantly by two mechanisms: oneidentical to that of the polycyclic carcinogens, and theother by +1 additions in a third DNA tract narrowlyseparated from the 3052 site. The alkylating carcinogenN-methyl-N'-nitro-N-nitrosoguanidine appears to have asimilar dual specificity. DNA base changes in 3052 rever-tants have been correlated with properties of histidinoldehydrogenase in crude extracts. This correlation of DNAbase sequence with electrophoretic and other properties ofthe mutant proteins allows one to analyze easily thespecificity of new mutagens that mutate this strain.

The concept of carcinogenesis as an expression of mutation inDNA has been revived in recent years (1-6). Mutations areof several types: base substitutions, frameshifts, and largerlesions. To type mutations induced by chemical carcinogens,Ames and his coworkers have been developing tester systemswith the bacterium Salmonella (2, 3). The basis of their ap-proach is scoring carcinogen-induced reversion to histidineindependence of histidine-requiring tester strains. Each testerstrain carries a known type of mutation. Reversion requires a

Abbreviations: NF, 2-nitrosofluorene; HC, hycanthone; NQ,nitroquinoline-N-oxide; NG, N-methyl-N'-nitro-N-nitroso-guanidine.* On leave from the Laboratory of Genetics, University of Tokyo,Japan. Present address: Max-Planck-Institut fur MolekulareGenetik, Abt. Wittmann, 1 Berlin 33 (Dahlem), Ihnestrasse63-73, West Germany.t Present address: Dept. of Pathology, University of RochesterMedical Center, Rochester, N.Y. 14620. To whom reprint re-

quests should be addressed.

1612

compensating mutation, almost invariably of the same generaltype as the original; i.e., base substitutions are corrected bybase substitutions, frameshifts by frameshifts. In particular,the Ames group has shown that many polycycic compoundswith reactive side groups, interpreted as proximal carcinogens,are frameshift mutagens in Salmonella (3-6).:One tester strain,TA1538, containing the frameshift mutatioi hisDS052, is un-usually sensitive to reversion by many -of these carcinogens;reversion is enhanced many-fold over-the spontaneous fre-quency (3-5). Our interest in examining DNA sequences in3052 and its revertants was stimulated by Ames. We now re-port on the unusual base sequence of a carcinogen-sensitiveDNA tract in 3052.

Frameshift mutations result from additions (+) or dele-tions (-) of DNA base pairs from genes encoding polypeptidechains, so that triplets in the product mRNA are not read inthe correct frame after the mutation (7, 8). Correction of suchmutations may occur by restoration of the original base se-quence, or by introduction of a closely positioned frameshiftof opposite sign. In these double frameshift mutants (+ -)the normal reading frame is restored in mRNA except for thesegment between the two frameshifts. The (+ -) mRNAsegment encodes a segment of altered amino acids in thepolypeptide chain, often disturbing its function. Sequencingthe affected polypeptide segment allows reconstruction ofassociated mRNA and DNA sequences (9, 10).The hisD gene encodes the enzyme histidinol dehydro-

genase (EC 1.1.1.23). To determine nucleic acid base changesin 3052 caused by polycyclic carcinogens and other frameshiftmutagens, we have induced reversion in 3052 by these com-pounds. Revertants carrying double frameshift mutationswere detected by rapid screening of crude extracts from rever-tants for altered histidinol dehydrogenase. The altered en-zyme from each double mutant was then purified and com-pared with the normal enzyme by peptide mapping to detectaltered peptides. These were sequenced to reconstruct al-tered DNA sequences in 3052 and its revertants. We havealso classified the reversions with respect to certain propertiesof histidinol dehydrogenase from crude extracts, and havecorrelated the classes of reversion with specific DNA sequencechanges.We believe that this newly characterized tester system will

be useful for rapid screening of carcinogens as frameshiftmutagens. For the relatively small effort of inducing reversionsin 3052 with carcinogens or other mutagens and examiningcrude extract histidinol dehydrogenase, it should be possibleto assign the reversions to the standard groups with knownbase sequence changes in DNA (see below).

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Mutagenesis by Polycyclic Carcinogens 1613

MATERIALS AND METHODS

A strain of 30S2 carrying the operator constitutive mutationhis01242, TR1693, was kindly constructed for us by J. R.Roth. The 1242 mutation allows production of 12-fold thenormal amounts of histidine enzymes (11). Revertants ofthis 305S strain were induced by spotting a drop of mutagensolution on enriched minimal agar spread plates by the methodof Ames (2). The following carcinogens were used: 2-nitroso-fluorene (NF) synthesized by Bartsch and Miller (3) andfurnished by Ames; hycanthone (HC) (12, 13), furnished byP. E. Hartman; nitroquinoline-N-oxide (NQ), furnished byH. B. Wood; and N-methyl-N'-nitro-N-nitrosoguanidine(NG) from Aldrich Chemicals. The acridine derivative frame-shift mutagens tested, ICR-191 and ICR-364-OH (14), werethe gift of H. J. Creech. All mutagens were used as solutionsat a concentration of 1 mg/ml, except for NG, which wasspotted as crystals.

Histidinol dehydrogenase specific activity and electro-phoretic mobility in polyacrylamide gels were determined bythe method of Yourno, Barr, and Tanemura (15). For se-quence analysis revertant enzymes were purified by the stan-dard method (16), compared with the wild type by peptidemapping, and affected peptides sequenced according toYourno and Heath (17) and Yourno (18).

RESULTS AND DISCUSSION

Frameshift mutation 30S2 was induced with the acridinederivative ICR-364-OH by Oeschger and Hartman, whomapped it in the middle region of the hiD gene. As is charac-teristic of frameshifts, 30S2 is induced to revert by certainframeshift mutagens, such as ICR, but not by pure base-substituting agents such as 2-aminopurine (19). The spon-taneous yield of revertants from 3052 was from 5 to 15 perplate (2 X 108 bacteria) after 72-hr incubation. Reversionwas weakly enhanced by NG and HC; in each case about 10revertant colonies arose per plate around the zone of mutagenkilling. Response to NQ, ICR-191, and ICR-364-OH was quitestrong, averaging about 75 colonies per mutagen spot. NF

T28

TABLE 1. Classification of revertanrs from strain 30Sf

Repre-Number of senta- HDH Relativerevertants tive activity electro-

rever- (% of phoreticClass Total Of each origin tant wild type) mobility

1 1 1/12 (spont.) R12 6 ± 0 1.06 ± 02 2 2/12 (spont.) R2 145 ± 11 1.00 :1 03 17 7/11 (ICR-191) R22

8/11 (ICR-364- R24 9 ± 4 1.00 i00OH)

2/5 (NG) R394 2 (spont.) 18 ± 5 0.90 ± 0.015 31 6/12 (spont.)

6/6 (NF) R144/11 (ICR-191) R192/11 (ICR-364- R25 21 ± 7 0.83 ± 0.01OH

5/5 (HC) R295/5 (NQ) R363/5 (NG) R41

6 2 1/12 (spont.) R5 8 ± 0 0.72 ±' 0.021/11 (ICR-364-OH)

From the left, Column 2: abbreviations used: (spont.), spon-taneous reversions; see Materials and Methods for other abbrevia-tions. Given is the fraction of total revertants of each originassigned to each class. Column 3: representative revertants werethose selected for peptide mapping and amino-acid analyses ofhistidinol dehydrogenase (HDH). Column 4: standard errors aregiven to the nearest integer. Column 5: values were determinedby separate electrophoresis and coelectrophoresis of revertantand wild-type histidinol dehydrogenase. Standard errors to thenearest 1%. Numbers in Columns 4 and 5 were calculated fromseveral determinations.

T9A

was highly mutagenic, producing about 500 colonies per muta-gen spot. A total of 55 revertant strains was isolated as fol-lows: spontaneous, 12 from 2 plates; NG-induced, 5 from 2

*__ Til

-GI n-Leu-Ala-G u -Leu-Pro-Arg -AlI a-As p-Thr -AI a -Arg-G In-AI a-Leu -Se r -AoIa-Se r -Arg - ------- proteinCAA CUG GCG GAA CUG CCG CGC GCG GAC ACC CC GG CAG GC* CU ------- mRNA

UUGICR-364-OH -1

A~~~~~hisD03052 CAGCUG GCG GAA CUG CCCCGGGAC ACC GAGGC AGG Ce Uo

\ ICR,NGNF,NO,HC r

NG,ICR GCG GAC ACC GCC GGC AGG CU-CG or -GC R22 A UUG

-Alo-Asp-Thr-Ala-GIy-Arg-Pro-Leu-Ser-AI o-Ser-Arg-+10 nucleotides T9A-T//

CUG C GA CACC G CAG GC CU-Leu-Pro-Arg-Gly-His-Arg-Arg-GIn-AI -Leu-

T2\ T9A T//

CAA CU AC UC. ACU GGC GGA ACU GCC GCG CGC GGA CAC CG'FGG CAG GC CU-R5 UUGAGA A UUG

-Gln-Leu-Thr-Ser-Thr-GIy-GIy-Thr-AIo-Alo-Arg-GIy-His-Arg-Arg-GIn-Ala-Leu-T28 T9A T//

FIG. 1. Reconstruction of altered mRNA nucleotide sequences in 305 and its revertants. Amino-acid residues in histidinol dehy-drogenase are juxtaposed with associated mRNA triplets. Frameshift sites in mRNA are bracketed.

Proc. Nat. Acad. Sci. USA 71 (1974)

Page 3: Chemical Carcinogens as Mutagens: Salmonella DNA Sequence ... · broader specificity of mutagenesis. Reversion with these mutagensoccurspredominantlybytwomechanisms:one ... Genetik,

1614 Genetics: Isono and Yourno Proc. Nat. Acad. Sci. USA 71 (1974)

TABLE 2. Amino-acid sequence changes in revertants of strain 3052 (continued on p. 1615)

Part A

Gln Leu Ala Glu Leu Pro -Arg

2.07 1.90 1.06 0.98 1.012.03 1.88 1.04 1.04 1.00

0.94 1.07 0.99

Gln - LIu - Ala

1.00 0.98 1.020.95 1.01 1.04

0.19 1.04

T28 S-2 mnole Glu - Leu - Pro - Arg

HCI 0.060 0.97 0.98 1.03 1.03Ed. 1 0.080 0.05 1.00 1.03 0.98

2 0.090 - 0.10 1.01 0.993 0.110 - - 0.20 1.00

APM 0.100 0.96 1.03

T28S-3 pmolc (Ala,

HCO 0.015 1.00Glu, Lcu, Pro) Arg

1.07 1.00 1.00 1.00

TlI pnole Gin Ala -1Lcu Scr- Ala - Ser- Arg

HCI 0.075 1.06 1.93 1.02 1.83 0.99Ed. 1 0.260 1.07 1.96 0.93 1.78 1.05

APM 0.080 1.12 0.50 1.74 1.00

TI S-1 iunole Gln - Ala - L u

HCI 0.075 1.04 1.01 0.93Ed. 1 0.065 1.03 1.00 0.97CPA 0.100 1.00

T I S-2 pmnole ser - Ala

HCI 0.180 0.92 1.00Ed. 1 0.095 0.13 1.00

T I S-3 wunole Ser - Arg

HCI 0.055 1.00 1.00Ed. 1 0.090 0.08 1.00

T9A #mole Ala - Asp - Thr - Ala- Arg

HCI 0.070 2.06 1.08 0.96 0.98APM 0.040 1.95 1.10 0.89 1.05Ed. 1 0.045 1.10 1.07 0.84 0.93

2 0.045 0.99 <0.05 0.86 1.013 0.020 0.98 - <0.05 1.014 0.020 <0.05 - - 1.00

R22T9A-T I I mole Ala - Asp - Thr- Ala- Gly- Arg- Pro- Leu- Ser -Ala -Ser - Arg

HCI . 0.045 2.93 1.02 1.01 0.99 2.01 0.98 1.06 1.92APM 0.100 3.29 0.82 0.81 0.99 1.15 1.01 1.99Ed. 1 1.90 1.04 1.02 0.93 2.04 0.97 1.12 1.97

2 1.89 <0.10 1.00 0.96 2.02 0.98 1.15 1.923 1.86 - <0.10 0.96 2.03 0.98 1.15 1.954 1.10 - - 0.93 1.91 0.93 1.13 1.735 1.06 - - 0.28 1.94 0.93 1.08 1.726 1.02 - - <0.10 1.25 0.96 1.11 1.757 1.02 - - - 1.16 0.29 1.02 1.718 1.02 - - - 1.14 <0.10 0.37 1.769 1.02 - - - 1.12 - 0.23 1.1910 0.46 - - - 1.00 - 0.17 0.98

Origin Part BR5

T28# pumole GIn - Thr - Leu- Ser -Thr - Gly - Gly -Thr- Ala -Ala -Arg

HC 0.045 0.95 2.88 1.01 1.03 1.98 2.07 0.98Ed. 1 0.035 0.90 2.91 0.99 0.98 2.05 2.08 0.99

T28 S-1 pmole Gin - Thr - Leu T9A'1 pnole Gly - His - Arg

HOI 0.095 1.08 0.98 0.93 HCI 0.035 0.72 0.99 1.01Ed. 1 0.045 1.06 0.96 0.98 Ed. 1 0.035 0.17 0.97 1.03CPA 0.040 0.45 1.00 2 0.045 0.16 0.54 1.00

128 S-2 pmole Ser - Thr T9AI Gly - His - Arg - Arg

HCI 0.050 0.96 1.04 HCI 0.035 0.67 0.98 2.02Ed. 1 0.045 0.09 1.00 Ed. 1 0.040 0.24 0.82 2.00

2 0.040 0.20 0.55 2.00

T28 5-3 pmole Gly - Gly - Thr - Ala

HCI 0.030 1.94 1.06 1.00Ed. 1 0.025 0.97 1.00 1.00

2 0.015 0.18 1.00 1.003 0.030 0.19 0.22 1.00

T28 S-4* unole (Gly - Gly - Thr - Ala - Ala) - ArgHCI 0.015 1.41 1.04 2.12 0.85

plates; HC-induced, 5 from 2 plates; NQ-induced, 5 from 2plates; ICR-191-induced, 11 from 4 plates; ICR-364-OH-in-duced, 11 from 4 plates; NF-induced, 6 from 2 plates. In allcases revertant colonies were wrinkled; no smooth colonieswere apparent. This morphology suggests that the 3052 muta-tion does not respond to external suppressors (15, 20).

Revertants were grouped into six classes on the basis ofspecific activity and electrophoretic mobility (pH 9.5) ofcrude extract histidinol dehydrogenase (Table 1). No rever-

sions to the wild type were detected; all revertants provedto be double frameshift (+ -) mutants. Class 5 is the largest,with 31 revertants. This class contains all of the polycyclic

carcinogen (NF, NQ, HC)-induced revertants, about half ofthe spontaneous and NG-induced revertants, and a smallerporportion of the ICR-induced revertants. Enzyme specificactivity is about 21% and electrophoretic mobility about 83%of normal values. Class 3 is the second major class, with 17revertants. This class includes the majority of the ICR-in-duced revertants and the remaining NG-induced revertants.Here enzyme specific activity is about 9% and electrophoreticmobility 100% of normal values. No spontaneous revertantsare included in Class 3. Four minor classes of revertant were

delineated, almost entirely from the remaining spontaneousrevertants. This is not unexpected, as we have often observed

OriginWild Type

T28 unoleHCI 0.070Ed. 1 0.045APM 0.100

T28 S-I AmileHCI 0.130Ed. 1 0.075CPA 0.100

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Mutagenesis by Polycyclic Carcinogens 1615

TABLE 2. Amino-acid sequence changes in revertants of strain 3052 (continued)

Part C

T9A* punole Gly - H6s - Arg - Arg

HCI 0.010 0.50 0.84 2.00

T9A' pUnole Gly - His - Arg

HCI 0.050 0.88 1.20 1.00Ed. 1 0.050 0.11 1.16 1.00

2 0.040 - 0.50 1.00

urnole Gin Leu - Ala - Glu - Leu - Pro - Arg

0.040 1.79 2.08 0.97 0.95 1.00

IsMoIc Gin - Leu - Ala

0.045 1.07 1.00 0.930.075 1.08 1.00 0.920.100 0.11 1.00

Ti 1 pnole Gln - (Ala2, Leu, Scr2) - Arg

HCI 0.040 1.07 1.90 1.20 1.83 1.00Ed. 1 0.040 1.08 2.03 1.03 1.84 1.00

T28 S-2HCIEd. 1

23

APM

CA§ pnsole

HCI 0.020APM 0.050Ed. 1 0.075

2 0.0703 0.0704 0.0655 0.0656 0.070

prnole

0.0250.0450.0350.0350.100

Ala

0.931.050.150.120.10

<0.10

Glu - Leu -

0.96 0.960.09 0.98

0.14

0.99

- Glu Leu

1.04 1.15

1.031.00 1.100.32 1.060.23 0.320.21 0.22

<0.10 0.200.13

Pro - Arg

1.04 1.001.09 1.001.03 1.000.18 1.00

1.01

Pro - Arg- Gly - His

1.00 0.96 0.97 0.941.03 0.98 0.92

1.04 0.94 0.93 0.731.01 0.97 0.96 0.781.01 1.00 0.99 0.800.28 0.99 1.01 0.820.17 0.37 1.00 0.810.11 0.20 0.26 0.81

CBf Asmole Arg - Arg

HCI 0.010 1.36APM 0.010 0.93Ed. I 0.010 0.95

2 0.010 0.59

Gin,

1.070.531.051.05

Ala, Leu

0.99 0.941.00 0.991.00 0.940.99 0.97

Peptides T28, T9A, T9A', and T11 were produced by tryptic digestion; peptides CA and CB by chymotryptic digestion. Peptide frag-ments designated S-N were produced by subtilisin digestion of tryptic peptides containing N-terminal Gin. These tryptic peptides wereresistant to the Edman sequencing procedure. Except as noted below, all digestion procedures have been previously described (see Ma-terials and Methods). Peptide T9A of R5 and R14 was produced by limited tryptic digestion of 8-min duration. Unless noted below, allpeptides were purified by column chromatography. Abbreviations are: HCl, standard acid hydrolysis; Ed. N, step N of the subtractiveEdman degradation; APM, aminopeptidase M digestion; CPA, carboxypeptidase A digestion. Although CPA would be expected toliberate one cyclized N-terminal Gln for each N-penultimate residue, this is not detected on the analyzer. The N-terminal position of Glnis also suggested by resistance to the Edman degradation.

# T28 of R5 showed 5% contamination with peptide T8. The contaminant values have been subtracted.§ Peptides T9A and T9A' of R5 were extracted from 25 and 10 peptide maps, respectively, stained with 0.025% ninhydrin. Peptides

CA and CB were similarly extracted from 15 peptide maps. Variable destruction of N-terminal residues occurred.* T28S-4 of R5 and T9A of R14 were extracted from three peptide maps stained with 1% ninhydrin. Significant destruction of the

N-terminal residues was observed.

unusual double frameshift mutants arising spontaneously.Here detection of rarer reversion events is optimal in theabsence of large numbers of mutagen-induced revertants (18,21, 22). Included in one of these minor classes is one ICR364-OH-induced revertant. We cannot decide whether thisrevertant is actually mutagen-induced or from spontaneousbackground. No wild types were found among the revertants.We can conclude that true reversions to wild type either are

rare events or do not occur in 3052. A priori, some spontaneousreversions to wild type would be expected from the simple-1 deletion of 3052 (see below). Screening of additionalspontaneous revertants is necessary to determine if true wildtypes do arise.To reconstruct altered DNA sequences in 3052 and its

revertants, purified histidinol dehydrogenase was examinedfrom representative revertants of each mutagenic origin andof most classes. Tryptic and chymotryptic digests of the en-

zymes were compared with the normal by peptide mappingand altered peptides were detected. With the exception ofNG-induced revertants R39 and R41, the amino-acid com-

position of each affected peptide, pooled from three to

four maps, was determined. When revertants of differentmutagenic origin were judged to be identical by map positionand amino-acid composition of affected peptides, one of thesewas selected as a standard and the affected peptides se-

quenced.Histidinol dehydrogenase of spontaneous revertant R5

(Class 6) proved to be a key to establishing the DNA nucleo-tide sequence of the carcinogen-sensitive "hotspot" of 3052.The + and - frameshifts of R5 bracket the hot spot and eachis clearly separated from it by a stretch of normal nucleotideresidues (Fig. 1). Two tryptic peptides were altered in R5.Peptide T9A was replaced by two basic peptides, designatedT9A and T9A'. These are overlapping peptides. T9A' con-

tains one C-terminal Arg residue, T9A two such residues(Table 2). Peptide T28 was also replaced by a more basicpeptide (Table 2B). The spontaneous reversion appears tohave involved an addition of 10 nucleotide pairs in DNA; thenet effect is addition of three extra amino-acid residues tohistidinol dehydrogenase of R5 (Fig. 1). The net gain of fourpositive charges in the R5 polypeptide accounts for its un-

usually slow electrophoretic mobility at pH 9.5 (Table 1).

Origin

R14

T28HCI

T28 S- IHCIEd. ICPA

Proc. Nat. Acad. Sci. USA 71 (1974)

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1616 Genetics: Isono and Yourno

Tryptic peptides T9A and TIl were absent from peptidemaps of Class 3 revertants (R22, R24, R39). In their place asingle fused peptide, T9A-T11, was located. In both casesexamined (R22, R24) the amino-acid composition of the"double" peptide was the sum of that of T9A and Til, exceptfor substitution of Gly and Pro residues for Ala and Gln. Thepeptide from the ICR-191-induced revertant, R22, was se-quenced (Table 2A). The double peptide results from altera-tion of the normal -Ala-Arg-Gln- sequence at the T9A-T11border to the trypsin-resistant sequence -Gly-Arg-Pro-. Thechanges found are consistent with the normal electrophoreticmobility of Class 3 enzymes (Table 1). In the case of Class 5revertants (R14, R19, R25, R29, R36, R41) only trypticpeptide T9A was altered. As in R5, this peptide was re-placed by the basic peptides T9A and T9A'. These matchedthe R5 peptides in location and amino-acid composition. Pep-tide T28 was normal in location and composition. Only R41was not analyzed for amino-acid composition. Peptides T9Aand T9A' from the NF-induced revertant R14 were sequencedand were, as expected, identical to the corresponding peptidesof R5 (Table 2C). The reduced electrophoretic mobility ofclass 5 histidinol dehydrogenase (Table 1) is seen to resultfrom a net gain of two positive charges.Chymotryptic peptide maps of Class 5 enzymes revealed

two extra basic peptides, designated CA and CB. These pep-tides from R14 were sequenced and found to represent bridgesbetween the affected tryptic peptides (Fig. 1). CA spans T28and T9A; CB spans T9A and T11. Although correspondingwild-type chymotryptic peptides were not detected by pep-tide mapping, the combined data allow the ordering of trypticpeptides as NHrT28-T9A-T11-COOH.

Histidinol dehydrogenase from the spontaneous Class 2revertant R2 was purified and characterized as above (datanot shown). From amino-acid composition data on purifiedpeptides the sequence of T9A was deduced to be Ala-Asp-Thr-Ala-Gly-Arg; that of Til, Ala-Leu-Ser-Ala-Ser-Arg(changes are italicized). R2 shows normal electrophoreticmobility. This revertant most likely arises from insertion of aG residue in mRNA after the arginine triplet for T9A (Fig.1). Enzyme from spontaneous Class 1 revertant R12 was like-wise examined. In this case peptides T9A and Til were re-placed by a fused peptide. From amino-acid composition ofthe fused peptide the deduced sequence is Ala-Asp-Thr-Gty-Gln-Ala-Leu-Ser-Ala-Ser-Arg (data not shown). The loss of apositive arginine residue explains the fusion of T9A and Ti1and the increased electrophoretic mobility of this enzyme(Table 1). The revertant probably results from deletion of twoadditional DNA base pairs from the 305 site (Fig. 1).The data show that the original 3062 mutation is a -1

deletion affecting the C-terminal portion of T9A (Fig. 1).Most likely this represents deletion of a G* C pair from a mis-pairing-prone DNA repeat of three G C pairs. ICR com-pounds seem to favor this type of repeating sequence asframeshift target sites (17, 18, 22, 23). Other sequences arepossible at the 3062 site, however. While the 3052 frameshiftwas induced with an acridine derivative, ICR-364-OH, theICR compounds tested do not induce reversion to the wildtype DNA sequence in 30562, i.e., restore the deleted G Cpair. As discussed above, neither were spontaneous revertantsof this type detected. We have observed a similar reversionpattern for a -1 frameshift at a different site in the hi8Dgene. This frameshift clearly results from deletion of a G- C

pair from a DNA repeat of three G- C pairs (Ino and Yourno,manuscript in preparation). ICR compounds seem to requireDNA repeats of three or more base pairs for frameshift muta-genesis.The ICR compounds tested here predominantly induce +1

frameshifts in a DNA tract narrowly separated from the 3052site, giving rise to Class 3 revertants (Fig. 1). A Gly-Arg-Prosequence replaces Ala-Arg-Gln in Class 3 revertants. In com-bination with previous observations on ICR mutagenesiscited above, this again suggests that reversion results fromaddition of a G- C pair to a DNA repeat of three G0 C pairs.While we have no composition data bearing on the point, ap-parently the alkylating agent NG is also capable of causing+ 1 reversions at this site. This capacity ofNG is much weakerthan its capacity to cause -1 deletions in similar DNA re-peats. The possibility is slight that Class 3 revertants isolatedas NG-induced are actually from spontaneous background.First, the density of NG-induced revertants on spread plateswas in considerable excess of background. Second, no spon-taneous revertants are included in Class 3.The carcinogen-sensitive site of 3052 proved to be a very

unusual mispairing-proneDNA repeat of -C-G-C-G-C-G-C-G-,close to the 3052 site (Fig. 1). This sequence was variablyreactive to all mutagens tested. In all cases examined the

-G-C-

mutagen-induced event was the deletion of a -C-G-doubletfrom the repeat to yield Class 5 revertants. In addition, sixof the 12 spontaneous revertants were assigned to Class 5 byenzyme properties, although sequence analysis of these wasnot done (Table 1).

Since HC and NG were only weakly mutagenic at this site,the possibility is again raised that some revertants isolated asmutagen-induced are actually spontaneous. The putative -2deletion induced by NG in this instance would indicate, withthe + 1 addition discussed above, newly appreciated, if weak,mutagenic capacities of this alkylating carcinogen. It is likelythat NG causes frameshifts by a less direct mechanism thanthat of intercalating agents. Alkylation damage may causespontaneous mispairing in replication or, by stimulating re-pair, increase the chance of spontaneous mispairing (17, 19).The polycycic carcinogens tested (NF, NQ, HC) reacted

specifically with the repeating doublet sequence. The ICRcompounds, like NG, showed a broader specificity. They re-acted somewhat less avidly at this carcinogen hotspot thanat the proposed DNA repeat of G* C pairs, so characteristi-cally a target of these mutagens. Nitrosofluorene was the mostpotent mutagen at the carcinogen hotspot; reversion responsewas almost an order of magnitude greater than that for in-termediate strength mutagens (NQ, ICR) at this site. Ameset al. have recently reported that NF was the most effectiveframeshift mutagen with 3052 from among 12 fluorene deriva-tives tested. Several other polycyclic carcinogens with anitroso side group are strongly mutagenic for 3052 (4), as areepoxides of some polycycic hydrocarbons (5). The Ames grouphas proposed that reactive metabolites of many polycyciccompounds are carcinogenic by way of causing frameshiftmutations. Requirements for strong activity are a polycycicstructure capable of a stacking interaction with DNA basepairs and a reactive side group to react covalently with DNA(4, 5). The 3052 system should prove useful in examining themutagenic specificity of such chemical carcinogens and othermutagens at the molecular level.

Proc. Nat. Acad. Sci. USA 71 (1974)

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Mutagenesis by Polycyclic Carcinogens 1617

This work was carried out at Brookhaven National Laboratoryunder the auspices of the U.S. Atomic Energy Commission. K.I.was supported by Grant AG-280 to J.Y. from the NationalScience Foundation. We thank Bruce Ames for introducing us tothis problem and for many stimulating discussions. We alsothank William Crockett and Frieda Englberger for excellenttechnical assistance.

1. Miller, J. A. & Miller, E. C. (1971) in Chemical Mutagens:Principles and Methods for their Detection, ed. Hollaender, A.(Plenum Press, New York), Vol. 1, pp. 83-119.

2. Ames, B. N. (1971) in Chemical Mutagens: Principles andMethods for their Detection, ed. Hollaender, A. (Plenum,Press, New York), Vol. 1, pp. 267-282.

3. Ames, B. N., Lee, F. 0. & Durston, W. E. (1973) Proc. Nat.Acad. Sci. USA 70, 782-786.

4. Ames, B. N., Gurney, E. G., Miller, J. A. & Bartsch, H.(1972) Proc. Nat. Acad. Sci. USA 69, 3128-3132.

5. Ames, B. N., Sims, P. & Grover, P. L. (1972) Science 176,47-49.

6. Ames, B. N., Durston, W. E., Yamasaki, E. & Lee, F. D.(1973) Proc. Nat. Acad. Sci USA 70, 2281-2285.

7. Brenner, S., Barnett, L., Crick, F. H. C. & Orgel, A. (1961)J. Mol. Biol. 3, 121-124.

8. Streisinger, G., Okada, Y., Emrich, J., Newton, A., Tsugita,E., Terzughi, E. & Inouye, M. (1966) Cold Spring HarborSymp. Quant. Biol. 31, 77-82.

9. Nirenberg, M., Caskey, R., Marshall, R., Brinacombe, R.,Kellogg, D., Doctor, B., Hatfield, D., Levin, J., Rottman,F., Pestka, S., Wilcox, M. & Anderson, F. (1966) Cold SpringHarbor Symp. Quant. Biol. 31, 11-16.

10. Khorana, H. G., Buchi, H., Gupta, H., Jacob, M., Kossel,H., Morgan, R., Nurang, S., Ohtsuka, E. & Wells, R.(1966) Cold Spring Harbor Symp. Quant. Biol. 31, 29-34.

11. Roth, J., Anton, D. & Hartman, P. (1966) J. Mol. Biol. 22,305-323.

12. Hartman, P. E., Levine, K., Hartman, Z. & Berger, H.(1971) Science 172, 1058-1060.

13. Haese, W. H., Smith, D. L. & Bueding, E. (1973) J. Pharma-col. Exp. Ther. 186, in press.

14. Ames, B. N. & Whitfield, H. J. (1966) Cold Spring HarborSymp. Quant. Biol. 31, 221-225.

15. Yourno, J., Barr, D. & Tanemura, S. (1969) J. Bacteriol.100, 453-459.

16. Yourno, J. & Ino, I. (1968) J. Biol. Chem. 242, 3273-3276.17. Yourno, J. & Heath, S. (1969) J. Bacteriol. 100, 460-468.18. Yourno, J. (1971) J. Mol. Biol. 62, 223-231.19. Oeschger, N. & Hartman, P. (1970) J. Mol. Biol. 101, 490-

502.20. Riddle, D. & Roth, J. (1970) J. Mol. Biol. 54, 134-143.21. Tanemura, S. & Yourno, J. (1969) J. Mol. Biol. 46, 459-

-466.22. Yourno, J. & Kohno, T. (1972) Science 175, 650-652.23. Yourno, J. (1972) Nature New Biol. 239, 219-221.

Proc. Nat. Acad. Sci. USA 71 (1974)


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