Prof. David A. Clifton

Associate Professor of Engineering Science

Computational Health Informatics (CHI) Laboratory

Governing Body Fellow – Balliol College

CHI Lab Overview

Michaelmas 2016

CALMS-2

Main study paper has been submitted to CCMed;

other related papers are in preparation

CALMS-3

Study paper is in preparation

CALMS-4

Currently specified as (i) examination of

clinical pathways for responding to deteriorating

patients, (ii) ambulatory monitoring of a subset

of patients with adverse outcomes

+1 PDRA @ IBME for system development

PICRAM (to November, 2016)

Main paper paused, waiting for patent filing

Anonymised database within Physionet(in discussion with Roger Mark)

HAVEN

Systematic reviews + protocol to be published

UAE Rhodes scholar – Farah Shamout

+1 PDRA @ KC/IBME, 3 yrs [currently advertised]

Deep Learning (MP research)

Exploratory analysis of ECG + activity

TensorFlow, Theano via Amazon

Gates Foundation (to September, 2017)

Acquisition of M. tuberculosis genomic data

Collaboration with CDCs from UK, USA, China, India

“100,000 TB genomes” project,

supported by Genomics England

IBME PDRA: Dr. Yang Yang (Shanghai Jiaotong)

Wellcome Trust (to September, 2020)

Machine learning methodology for handling hierarchical trees of

genomics data, predicting risk of antibiotic resistance

Students to be co-supervised with Danny Wilson (NDM)

+1 PDRA @ IBME, 4 yrs [to be advertised]

EPSRC HTCA (to September, 2021)

Fundamental ML for modelling time-series EHR data

Rhodes scholar: Drew Birrenkott (Trinity College)

Clarendon scholar: Glen Wright Colopy (St. Cross College)

EPSRC DTA: Sarah-Jane Rodgers (Balliol Lubbock Scholar)

+1 PDRA @ IBME, data analysis – fundamental methodology [to be advertised]

+1 PDRA @ IBME, data analysis – MIT eICU

with Prof. Roger Mark and Dr. Li-wei Lehman

[to be advertised]

Intelligent Sensors (to September, 2019)

Pushing algorithms into sensors: wristworn + earables

+1 PDRA @ IBME, machine learning, 3 yrs – Delaram Jarchi[recruited]

+1 PDRA @ IBME, signal processing, 2 yrs – Fernando Andreotti[recruited, Maarten de Vos’ group]

+1 PDRA @ IBME, systems integration, 2 yrs – TBC[to be re-advertised, Lionel Tarassenko’s group]

EPSRC NetworksPlus “FAST” (to September, 2020)

No recruitment at Oxford, networking + research budget

NERC, UNICEF (to September, 2018)

Fusing water and health data in Kenya

Handpumps + local health network data

LSI DTC: Farah Colchester (University College)

IBME PDRA: Dr. Stijn Luca (0.5 FTE, at KU Leuven)

DfID (to September, 2022)

Risk stratification for water & poverty in Bangladesh

Rhodes / UNICEF scholar: Heloise Greeff (Balliol College)

IBME PDRA: Dr. Achut Manandhar (Duke)

Dialysis (to September, 2020)

NIHR + EPSRC match-funded

Fundamental ML for multivariate time-series

IBME PDRA: Dr. Tingting Zhu

China Kadoorie Biobank (to September, 2018)

0.5 million participants, various ECG + EHRs

China Research Council: Yanting Shen (Trinity)

Immune Disease (to October, 2016)

“Oxford IBD Cohort”: rich EHR + genomic datasets

Rhodes scholar: Kate Niehaus (Trinity)

COPD (to September, 2017)

Analysis of EDGE data

EPSRC DTA: Peter Gyring

ASPIRE (to 2020)

Intelligent sensors in the home,

for COPD patients

+1 PDRA @ IBME, machine learning, 3 yrs

+1 PDRA @ IBME, signal processing, 3 yrs

+1 PDRA @ IBME, systems integration, 3 yrs