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Citric Acid Cycle: A Two Stage Process

Date post: 17-Jan-2018
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Citric Acid Cycle: A Two Stage Process Stage One: C4 + C2 condensation C6 tricarboxylic acid Oxidative decarboxylation 2 CO2 Succinyl CoA Net Result: 2NADH + 2CO2 + Succinyl CoA
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Citric Acid Cycle Generates Reductive Equivalents Utilized in Respiration
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Page 1: Citric Acid Cycle: A Two Stage Process

Citric Acid Cycle Generates Reductive Equivalents Utilized in Respiration

Page 2: Citric Acid Cycle: A Two Stage Process

Citric Acid Cycle: A Two Stage Process

Stage One: C4 + C2 condensation C6 tricarboxylic acid

Oxidative decarboxylation 2 CO2 Succinyl CoA

Net Result: 2NADH + 2CO2 + Succinyl CoA

Page 3: Citric Acid Cycle: A Two Stage Process

C4 + C2 Condensation ReactionCondensation catalyzed by enzyme dimer Citrate Synthase

RxN Driver

Page 4: Citric Acid Cycle: A Two Stage Process

Citrate Synthase Reaction

Page 5: Citric Acid Cycle: A Two Stage Process

Citrate Synthase Reaction

Page 6: Citric Acid Cycle: A Two Stage Process

Citrate Synthase Reaction

Page 7: Citric Acid Cycle: A Two Stage Process

Citrate Synthase Reaction

Page 8: Citric Acid Cycle: A Two Stage Process

Citrate to Isocitrate Conversion via AconitaseHydroxyl shift for subsequent oxidative decarboxylation

Page 9: Citric Acid Cycle: A Two Stage Process

Isocitrate Dehydrogenase: Oxidation and Decarboxylation

Oxalosuccinate not released from the enzyme

Page 10: Citric Acid Cycle: A Two Stage Process

α-Ketoglutarate Dehydrogenase: Oxidation and Decarboxylation

How similar is α-ketoglutarate dehydrogenase with pyruvate dehydrogenase in terms of substrate components? Reaction mechanism?

Page 11: Citric Acid Cycle: A Two Stage Process

Citric Acid Cycle Part Two: Oxaloacetate Regeneration

Succinyl Coenzyme A Synthetase couples hydrolysis of Coenzyme A (-33 kJ/mol) with GTP formation (-30 kJ/mol)

The energetics works but what about the reaction mechanism?

Page 12: Citric Acid Cycle: A Two Stage Process

Succinyl CoA-Sythetase Generates GTP

What is the Nu:-, E, and leaving group with GTP generation?

Page 13: Citric Acid Cycle: A Two Stage Process

Oxaloacetate Enzyme Regeneration from Succinate• Succinate Dehydrogenase

• Fumerase

• Malate Dehydrogenase

Page 14: Citric Acid Cycle: A Two Stage Process

A Color-Coded Citric Acid Cycle Isocitrate is prochiral

Succinate is a symmetric molecule

Generated products include:

2CO2 + 3NADH + 1FADH2 + GTP + CoA

Page 15: Citric Acid Cycle: A Two Stage Process

Citric Acid Energetics

Page 16: Citric Acid Cycle: A Two Stage Process

Citric Acid Cycle Regulation Points

ATP and NADH are indicators of a high energy state

ADP an indicator of a low energy state

Regulatory sites include:

Isocitrate dehydrogenase

α-Ketoglutarate dehydrogenase

Pyruvate dehydrogenase

Page 17: Citric Acid Cycle: A Two Stage Process

Citric Acid Cycle is a Source for Biosynthetic Precursors

Page 18: Citric Acid Cycle: A Two Stage Process

Transamination Reaction

Page 19: Citric Acid Cycle: A Two Stage Process

Citric Acid Cycle Intermediates:

Replenished as Metabolites are Drawn Off for Biosynthesis

Anapleurotic reactions lead to a replenishment of pathway components (e.g. pyruvate carboxylase).

Page 20: Citric Acid Cycle: A Two Stage Process

Problems: 1, 3, 5, 7 and 9


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