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Clinical Measures
Genotype
Local Storage
BIRN Rack
SRBMCAT
HID/XNAT/LONI
DU
P
Calibration & Analysis
Tools
GRID
PortalMediator
Institution A
BIRN Rack
SRBMCAT
Institution B
… Workflow & Control: - Queries (identify subject populations, extract data, etc.) - Statistical Analysis - Download Data for: > Visualization > More Statistics > More Processing
- Interoperable Queries (literature, homology, other databases, etc.)
Human Data Protection
(De-identification Upload Pipeline, DUP)
StandardizedAcquisition
Protocol
Institution C
BIRN: Informatics Architecture
Local DB
HID/XNAT/LONI
AHM 2005Informatics - Project Goals
Databasing and Information Management
across sites Data and Tool Interoperation
• Ontology for Data Integration
Provenance Enhance Workflow Options Statistical Interface Knowledge Management
• Semantic Web Functionality
Semi-Public & Public Access to Data
ClinicalMeasures
Genotype
LocalStorage
BIRN Rack
SRBMCAT
HID/XNAT/LONI
Calibration & Analysis
Tools
GRID
PortalMediator
Institution A
BIRN Rack
SRBMCAT
Institution B
Workflow & Control: - Queries (identify subject populations, extract data, etc.) - Statistical Analysis - Download Data for: > Visualization > More Statistics > More Processing
- Interoperable Queries (literature, homology, other databases, etc.)
Human Data Protection
(De-identification Upload Pipeline, DUP)
StandardizedAcquisition
Protocol
Institution C
HID/XNAT/LONI
AHM 2005Informatics - Achievements
Since Oct04DATABASE TECHNOLOGIES Multiple HID’s in operation and with Data (~8 sites)
More Clinical Assessments in HID Improved End-to-end Uploading to SRB/HID
• (in cooperation w/ fBIRN) Multiple XNAT’s in operation with Image,
Demographic & Volumetric Data (5 instances/ 3 sites)
Provenance Structures Incorporated into XNAT & HID
Controlled Release Cycle of Tools (BIRN Release 2.0 6/14/2005)
AHM 2005Informatics - Achievements
Since Oct04KNOWLEDGE MANAGEMENT Haystack/Eclipse Semantic Environment
PUBLIC DATA Public Data (OASIS & 10/10 UCSD) to be Released
• (any day now…)
UNRELATED ACTIVITIES Red Sox win World Series…
XNAT
BuildReport
ExportControl
Browse
Drill Down
XNAT
AHM 2005Informatics - Achievements
Since Oct04
AHM 2005Informatics - Achievements
Since Oct04Haystack/Eclipse Workspace
AHM 2005Informatics - Discussion Items
Continue the expansion of BIRN-compliant Data Information Systems at Multiple Locations
Data Interoperation (Multiple instances of pool-able data across cites, within and between management platforms)
Increase Availability of Completely Public Data
Workflow
Ontology
AHM 2005Informatics - Oct 2006 Goals
To be fleshed out over next two days…
More HID and XNAT Sites & Data (UCI & JHU & +++)
Inter-site Information Sharing Between Database Systems - MAD‡ & SASHA datasets as exemplars: ‘Manual’ and ‘Automated’ Mediation Amongst Systems
XML Data‡ Interoperation Between XNAT & HID (w/ fBIRN) Continue Controlled Release Cycle of Tools (BIRN Release
2.1?) - Incorporate XNAT & HID/CALM/GAME Updates
mBIRN Public Data Portal• 10/10, OASIS (~400)‡, ADNI (~100), MIRIAD (~300), others
Workflow
Ontology
End