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University of Haifa Institute of Evolution L. saligna L. aculeata Collecting and study genetic diversity in natural populations of wild Lactuca spp. Alex Beharav Institute of Evolution, University of Haifa [email protected]
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Page 1: Collecting and study genetic diversity in natural ...archive-ecpgr.cgiar.org/fileadmin/ · ifa – on Lebeda et al. submitted 36 accessions 21 allozyme loci Dice similarity Genetic

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L. saligna L. aculeata

Collecting and study genetic diversity in natural

populations of wild Lactuca spp.

Alex Beharav Institute of Evolution, University of Haifa

[email protected]

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● Collecting, conservation, studying ● Morphological traits, taxonomic validation ● Identification natural putative hybrids ● Bolting control (L. georgica) ● Genetic diversity ● Out-crossing rate ● species definition ● Diseases resistance - Bremia Lactucae ● Chemical composition ● "Maror” מרור

Objectives

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Categorization of Lactuca species into genes pools following McGuire et al. (1993) concept.

L. sativa is part of a reproductively isolated group that includes the wild species L. serriola, L. saligna, and L. virosa (in order of decreasing sexual compatibility with L. sativa).

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● Only L. serriola representing the primary gene pool ● Only low samples (generally 1-2) representing each species in most studies

Main bottlenecks

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Plant geographical territories and

district of Israel

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Lactuca serriola חסת המצפן

(2n=2x=18), the progenitor of cultivated lettuce (Zohary

1991)

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Unique germplasm of 562 accessions that

morphologically seemed L. saligna was

collected from 41 natural populations

(locations) throughout the Israel.

Beharav et al. Isr. J. Pl. Sci. 2008

Metulla, Israel

Kafer Kela, Lebanon

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Six other wild species are taxonomically close to the cultivated lettuce:

● L. aculeata

● L. scarioloides

● L. azerbaijanica

● L. Georgica

● L. dregeana

● L. altaica

However, they are less widespread, and the status of some of them as a distinct species is unclear (Doležalová et al. 2003; Lebeda et al. 2004a,b; Zohary 1991).

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Seeds from 151 plants that looked like L. aculeata were collected from 11 localities

(nine across the Golan Heights and two from the

Hula Plain)

Beharav et al. Genet. Resour. Crop Evol. 2010

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(i) to collect and validate the taxonomy of germplasm of five wild species collected throughout their distribution regions:

● L. scarioloides

● L. azerbaijanica

● L. Georgica

● L. dregeana

● L. altaica

(ii) to study the status and diversity of above wild species on a wider scale among individuals from different natural populations.

Objectives

Learning morphology of rare wild Lactuca spp.

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3 samples with respective labels of L.

dregeana (seeds supplied by various

gene banks)

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3 samples with respective labels of L. altaica

(2n=2x=18; seeds supplied by various gene banks)

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Sample with respective labels of L. georgica

(2n=2x=18; seeds supplied by DEU gene bank)

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Seeds from 51 plants (4 of them were marked as

natural putative hybrids with L. serriola) that looked like L. georgica (2n=2x=18)

were collected from 7 localities during collecting missions throughout four

regions of Armenia.

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Unique germplasm of 109 L. tuberosa

פרחים-כחולתחסה

(2n=2x=18) accessions, collected from 39 natural populations

(locations) throughout the Israel.

Afula-‘Illit

24.04.2010 Rosh-Pinna

21.04.2011

Shemurat Hermon II (Har Kahal)

28.05-24.06.2011

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L. Orientalis חסה מזרחית

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L. undulata

חסה גלונית

South Sinai

02.04.1971 (Danin)

Wadi Musa, Edom

17.04.1929 (Naftolsky)

Wadi Bed, Edom

11.05.2009 (Saifan)

Sabah

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Cichorium pumilum Cichorium calvum

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Leafy vegetables Number of accessions (old accessions)

Genus Crop name IGB (ISR) IOE (ISR)

Asparagus Asparagus 10 (6)

Atriplex French spinach 32 (7)

Chenopodium Good King Henry, Mercury 13 (3)

Chrysanthemum Garland chrysanthemum 28 (5)

Cichorium Chicory, Endive 20 (59) 40

Cynara Artichoke 18 (10)

Diplotaxis Rocket salad 26 (11)

Eruca Rocket salad 42 (28)

Lactuca Lettuce 73 (157) 1249

Lepidium Garden cress 9 (32)

Portulaca Purslane 10 (2)

Rheum Rhubarb 3

Rumex Garden sorrel, Sour grass 41

Spinacia Spinach 0 (1)

Taraxacum Dandelion 2

Tetragonia New Zealand spinach 0 (4)

Valerianella Lambs lettuce, Corn salad 9

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Multiplication and taxonomic validation of L. saligna accessions

according to morphological characters following Doležalová et al. 2002 (Hort. Sci. (Prague) 29: 56-83).

Beharav et al. Isr. J. Pl. Sci. 2008

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Multiplication and taxonomic validation of L. aculeata accessions according to morphological characters following Doležalová et al.

2002 (Hort. Sci. (Prague) 29: 56-83).

Beharav et al. Genet. Resour. Crop Evol. 2010

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Lebeda et al. submitted

Genetic polymorphism in L. aculeata populations and occurrence of natural putative hybrids

between L. aculeata and L. serriola

L. aculeata (376-15)

putative hybrid L. aculeata × L. serriola (343-8A)

L. serriola f. serriola (377-8)

Lebeda et al. Biochem. Syst. Ecol. 2012

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Bolting control of L. georgica by low temperatures

Beharav, Hellier, Harutyunyan, Hovhannisyan, running

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Kitner et al. Isr. J. Pl. Sci. 2008

Analysis of 490 AFLP loci (Jaccard´s

similarity) from 67 L. saligna accessions

collected from four European and three

Middle Eastern countries

Genetic diversity of wild Lactuca spp.

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Lebeda et al. submitted

36 accessions 21 allozyme loci Dice similarity

Genetic polymorphism in L. aculeata populations and occurrence of natural putative hybrids

between L. aculeata and L. serriola

Lebeda et al. Biochem. Syst. Ecol. 2012

Species definition ?

Open to discussion

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Genetic and phenotypic structure in Israeli

natural populations of three predominantly self-pollinating wild Lactuca species

Beharav et al. In preparation

Fig... Correlation between geographical distance (Meter) and genetic distance (Simple match; 235 AFLP

markers), in six wild Lactuca spp. populations (Mantel test; P = probability values (9999 permutations))

y = 0.0002x + 0.0169r² = 0.0188; P = 0.169

0.000

0.020

0.040

0.060

0.080

0 15 30 45 60

Sim

ple

mat

ch

Meter

L. serriola - population 365

y = 0.0012x + 0.0117r² = 0.2425; P = 0.000

0.000

0.050

0.100

0.150

0.200

0 30 60 90 120

Sim

ple

mat

ch

Meter

L. serriola - population 377

y = 1E-05x + 0.0043r² = 0.0027; P = 0.351

0.000

0.003

0.005

0.008

0.010

0 15 30 45 60

Sim

ple

mat

ch

Meter

L. aculeata - population 367

y = 0.0002x + 0.0186r² = 0.2996; P = 0.001

0.000

0.015

0.030

0.045

0.060

0 40 80 120 160

Sim

ple

mat

ch

Meter

L. aculeata - population 380

y = 0.0005x + 0.0631r² = 0.1995; P = 0.012

0.000

0.040

0.080

0.120

0.160

0 35 70 105 140

Sim

ple

mat

ch

Meter

L. saligna - population 369

y = 0.0007x + 0.0255r² = 0.5444; P = 0.000

0.000

0.040

0.080

0.120

0.160

0 30 60 90 120

Sim

ple

mat

ch

Meter

L. saligna - population 379

Fig... Correlation between geographical distance (Meter) and dissimilarity coefficient (Cavalli-Sforza and

Edwards´chord distance Dc; 11 EST-SSR loci), in six wild Lactuca spp. populations (Mantel test; P = probability

values (9999 permutations).

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Genetic and phenotypic structure in Israeli

natural populations of three predominantly self-pollinating wild Lactuca species

Beharav et al. In preparation

0.426

0.045 0.048 0.062

0.110

0.153

0

0.05

0.1

0.15

0.2

0.25

0.3

0.35

0.4

0.45

L. serriola Avi'el

L. serriola Kaukab

L. aculeata Hamappalim

L. aculeata Nov

L. saligna Metulla

L. saligna Binyamina

t (out-crossing rate)

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Genetic polymorphism in L. Georgica populations

using TRAP technique

Beharav, Hellier, Kisha. Running

- L. Georgica (Armenia)

- L. serriola (Armenia; Israel)

- L. aculeata (Israel)

- L. saligna (Armenia; Israel)

- L. virosa. (Various)

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Frequency of different degrees of infection (i.e. percentages of a pathogen sporulation intensity) among all L. saligna-B. lactucae

interactions (N=1460).

Bremia lactucae

Petrželová et al. Ann. App. Biol. 2011

0

10

20

30

40

50

0 5 10 15 20 25 30 35 40 45 50 55 60 65 70

Degree of infection (%)

Fre

qu

en

cy (

%)

Conclusion: to produce a mapping population within L. saligna?

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Reaction pattern to Bremia lactucae California Pathotype VIII 879 (Avr 17, 36, 37, 38) in seedlings from natural

populations of three wild Lactuca spp. collected in Israel

Beharav, Michelmore, Ochoa, unpublished data

0% 20% 40% 60% 80% 100%

L. aculeata

L. serriola

L. saligna

36

0

83

33

60

0

Resistance

Susceptible

Species definition ?

Open to discussion

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Beharav, Michelmore, Ochoa, unpublished data

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Genetic variability of L. aculeata germplasm expressed by resistance variation against five Bl races of B. lactucae

Jemelková et al. WPP conference (Poster), Olomouc, 2013

● Susceptible reactions were prevailing, however surprisingly there was recorder also full resistance what is showing that this species could be considered as interesting source of new race-specific resistance for lettuce breeding

Conclusion: to produce a mapping population within L. aculeata?

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Variation of sesquiterpene lactones in L. aculeata natural populations from Israel, Jordan and Turkey

Beharav et al. Biochem. Syst. Ecol. 2010

Total sesquiterpene lactone contents (mg/g of dry plant material)

1

3

5

7

Num

ber

of accessio

ns

2 4 6 8 10 12 14

L. sativa lines JOR224-22 ISR343-3 a

1

2

3

4

5

Num

ber

of accessio

ns

0 5 10 15

b L. sativa lines,

ISR343-3

JOR224-22

Total sesquiterpene lactone contents (mg/g of dry plant material)

Analysis of seven sesquiterpene lactones from roots (a) and leaves (b) of 23

accessions collected from 11 localities

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Since Israel is not a signatory to the SMTA Treaty, Israeli collections are not defined as European collections. So, topic of signature is currently not under the Israeli scientists.

Finally…

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ACKNOWLEDGEMENTS

Members from: ● Institute of Evolution, University of Haifa, Israel. ● Flora of Israel Online. ● National Agrarian University of Armenia, yerevan, Armenia. ● National Center for Agricultural Research and Extension (NCARE), Baqa‘, Jordan. ● Department of Botany, Palacký University, Olomouc-Holice, Czech Republic. ● Western Regional Plant Introduction Station, Washington State University, Pullman, WA. ● The Genome Center, University of California, Davis, CA. ● Department of Phytochemistry, Institute of Pharmacology, Polish Academy of Sciences, Krakow, Poland. ● Rijk Zwaan Breeding B.V., De Lier, The Netherlands.

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