1
Curriculum Vitae
Mamoru Kato, Ph.D.
National Cancer Center
5-1-1, Tsukiji, Chuuoo-ku
Tokyo 104-0045, Japan
E-mail: [email protected]
Tel: +81-3-3542-2511 (ext. 3124)
Web page: http://www.ne.jp/asahi/mk/home/
Education and Employment
2013/07 – Present Head, Dept. of Bioinformatics, National Cancer Center Japan
2012/06 – Present Laboratory Head, Div. of Cancer Genomics,
National Cancer Center Japan
2009/04 – 2012/05 Computational Postdoctoral Fellow,
Cold Spring Harbor Laboratory, USA
2005/04 – 2008/03 Adjunct Lecturer in School of Medicine, Keio University, Japan
2004/04 – 2009/03 Research Scientist, RIKEN, Japan
2004/03 Ph.D. Degree in Physics, University of Tokyo, Japan
2003/04 – 2003/08 Research Assistant, Cold Spring Harbor Laboratory, USA
2002/02 – 2003/03 Visiting Student, Cold Spring Harbor Laboratory, USA
2001/04 – 2003/03 Research Fellow of the Japan Society
for the Promotion of Science for Young Scientists
2000/04 – 2004/03 Ph.D. Program, University of Tokyo, Japan
2000/03 M.S. in Physics, University of Tokyo, Japan
1998/03 B.S. in Physics, Kyoto University, Japan
Last updated: March, 2017
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Specialties
Bioinformatics
Computational biology
Peer-reviewed Papers
2017
Shintaro Fukushima, Satoshi Yamashita, Hisato Kobayashi, Hirokazu Takami,
Kohei Fukuoka, Taishi Nakamura, Kai Yamasaki, Yuko Matsushita, Hiromi
Nakamura, Yasushi Totoki, Mamoru Kato, Tomonari Suzuki, Kazuhiko Mishima,
Takaaki Yanagisawa, Akitake Mukasa, Nobuhito Saito, Masayuki Kanamori,
Toshihiro Kumabe, Teiji Tominaga, Motoo Nagane, Toshihiko Iuchi, Koji
Yoshimoto, Masahiro Mizoguchi, Kaoru Tamura, Keiichi Sakai, Kazuhiko
Sugiyama, Mitsutoshi Nakada, Kiyotaka Yokogami, Hideo Takeshima, Yonehiro
Kanemura, Masahide Matsuda, Akira Matsumura, Kazuhiko Kurozumi, Keisuke
Ueki, Masahiro Nonaka, Akio Asai, Nobutaka Kawahara, Yuichi Hirose, Tatusya
Takayama, Yoichi Nakazato, Yoshitaka Narita, Tatsuhiro Shibata, Masao Matsutani,
Toshikazu Ushijima, Ryo Nishikawa, Koichi Ichimura, On behalf of The
Intracranial Germ Cell Tumor Genome Analysis Consortium (The
iGCTConsortium)
Genome‑wide methylation profiles in primary intracranial germ cell tumors
indicate a primordial germ cell origin for germinomas
Acta Neuropathologica, 2017, 133, 445-462.
Tsuyoshi Takahashi, Asmaa Elzawahry, Sachiyo Mimaki, Eisaku Furukawa, Rie
Nakatsuka, Hiromi Nakamura, Takahiko Nishigaki, Satoshi Serada, Tetsuji Naka,
Seiichi Hirota, Tatsuhiro Shibata, Katsuya Tsuchihara, Toshirou Nishida, and
Mamoru Kato
Genomic and transcriptomic analysis of imatinib resistance in gastrointestinal
stromal tumors
Genes, Chromosomes & Cancer, 2017, 56, 303-313.
Naofumi Asano, Akihiko Yoshida, Sachiyo Mitani, Eisuke Kobayashi, Bunsyo
Shiotani, Motokiyo Komiyama, Hiroyuki Fujimoto, Hirokazu Chuman, Hideo
Morioka, Morio Matsumoto, Masaya Nakamura, Takashi Kubo, Mamoru Kato,
Takashi Kohno, Akira Kawai, Tadashi Kondo, and Hitoshi Ichikawa
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Frequent amplification of receptor tyrosine kinase genes in
well-differentiated/dedifferentiated liposarcoma
Oncotarget, 2017, 8, 12941-12952.
Hideyuki Hayashi, Takashi Kohno, Hideki Ueno, Nobuyoshi Hiraoka, Shunsuke
Kondo, Motonobu Saito, Yoko Shimada, Hitoshi Ichikawa, Mamoru Kato,
Tatsuhiro Shibata, Chigusa Morizane, Yasunari Sakamoto, Kazuaki Shimada,
Yoshito Komatsu, Naoya Sakamoto, and Takuji Okusaka,
Utility of Assessing the Number of Mutated KRAS, CDKN2A, TP53, and
SMAD4 Genes Using a Targeted Deep Sequencing Assay as a Prognostic
Biomarker for Pancreatic Cancer
Pancreas, 2017, 46, 335-340.
2016
Yuko Tanabe, Hitoshi Ichikawa, Takashi Kohno, Hiroshi Yoshida, Takashi Kubo,
Mamoru Kato, Satoru Iwasa, Atsushi Ochiai, Noboru Yamamoto, Yasuhiro
Fujiwara, and Kenji Tamura
Comprehensive screening of target molecules by next-generation sequencing in
patients with malignant solid tumors: guiding entry into phase I clinical trials
Molecular Cancer, 2016, 15, 73-77.
Koichi Ichimura, Shintaro Fukushima, Yasushi Totoki, Yuko Matsushita, Ayaka
Otsuka, Arata Tomiyama, Tohru Niwa, Hirokazu Takami, Taishi Nakamura,
Tomonari Suzuki, Kohei Fukuoka, Takaaki Yanagisawa, Kazuhiko Mishima, Yoichi
Nakazato, Fumie Hosoda, Yoshitaka Narita, Soichiro Shibui, Akihiko Yoshida,
Akitake Mukasa, Nobuhito Saito, Toshihiro Kumabe, Masayuki Kanamori, Teiji
Tominaga, Keiichi Kobayashi, Saki Shimizu, Motoo Nagane, Toshihiko Iuchi,
Masahiro Mizoguchi, Koji Yoshimoto, Kaoru Tamura, Taketoshi Maehara,
Kazuhiko Sugiyama, Mitsutoshi Nakada, Keiichi Sakai, Yonehiro Kanemura,
Masahiro Nonaka, Akio Asai, Kiyotaka Yokogami, Hideo Takeshima, Nobutaka
Kawahara, Tatsuya Takayama, Masahiro Yao, Mamoru Kato, Hiromi Nakamura,
Natsuko Hama, Ryuichi Sakai, Toshikazu Ushijima, Masao Matsutani, Tatsuhiro
Shibata, Ryo Nishikawa, The Intracranial Germ Cell Tumor Genome Analysis
Consortium
Recurrent neomorphic mutations of MTOR in central nervous system and
testicular germ cell tumors may be targeted for therapy
Acta Neuropathologica, 2016, 131, 889–901
Akihiro Fujimoto*, Mayuko Furuta*, Yasushi Totoki*, Tatsuhiko Tsunoda*,
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Mamoru Kato*, Yuichi Shiraishi, Hiroko Tanaka, Hiroaki Taniguchi, Yoshiiku
Kawakami, Masaki Ueno, Kunihito Gotoh, Shun-ichi Ariizumi, Christopher P
Wardell, Shinya Hayami, Toru Nakamura, Hiroshi Aikata, Koji Arihiro, Keith A
Boroevich, Tetsuo Abe, Kaoru Nakano, Kazuhiro Maejima, Aya Sasaki-Oku, Ayako
Ohsawa, Tetsuo Shibuya, Hiromi Nakamura, Natsuko Hama, Fumie Hosoda,
Yasuhito Arai, Shoko Ohashi, Tomoko Urushidate, Genta Nagae, Shogo Yamamoto,
Hiroki Ueda, Kenji Tatsuno, Hidenori Ojima, Nobuyuki Hiraoka, Takuji Okusaka,
Michiaki Kubo, Shigeru Marubashi, Terumasa Yamada, Satoshi Hirano, Masakazu
Yamamoto, Hideki Ohdan, Kazuaki Shimada, Osamu Ishikawa, Hiroki Yamaue,
Kazuki Chayama, Satoru Miyano, Hiroyuki Aburatani, Tatsuhiro Shibata, and
Hidewaki Nakagawa
Whole genome mutational landscape and characterization of non-coding and
structural mutations in liver cancer
Nature Genetics, 2016, 48, 500-509
Ryutaro Uchi, Yusuke Takahashi, Atsushi Niida, Teppei Shimamura, Hidenari
Hirata, Keishi Sugimachi, Genta Sawada, Takeshi Iwaya, Junji Kurashige, Yoshiaki
Shinden, Tomohiro Iguchi, Hidetoshi Eguchi, Kenichi Chiba, Yuichi Shiraishi,
Genta Nagae, Kenichi Yoshida, Yasunobu Nagata, Hiroshi Haeno, Hirofumi
Yamamoto, Hideshi Ishii, Yuichiro Doki, Hisae Iinuma, Shin Sasaki, Satoshi
Nagayama, Kazutaka Yamada, Shinichi Yachida, Mamoru Kato, Tatsuhiro Shibata,
Eiji Oki, Hiroshi Saeki, Ken Shirabe, Yoshinao Oda, Yoshihiko Maehara, Shizuo
Komune, Masaki Mori, Yutaka Suzuki, Ken Yamamoto, Hiroyuki Aburatani, Seishi
Ogawa, Satoru Miyano, and Koshi Mimori
Integrated multiregional analysis proposing a new model of colorectal cancer
evolution
PLOS Genetics, 2016, 12, e1005778.1-24
Shinichi Yachida, Laura D. Wood, Masami Suzuki, Erina Takai, Yasushi Totoki,
Mamoru Kato, Claudio Luchini, Yasuhito Arai, Hiromi Nakamura, Natsuko Hama,
Asmaa Elzawahry, Fumie Hosoda, Tomoki Shirota, Nobuhiko Morimoto, Kunio
Hori, Jun Funazaki, Hikaru Tanaka, Chigusa Morizane, Takuji Okusaka, Satoshi
Nara, Kazuaki Shimada, Nobuyoshi Hiraoka, Hirokazu Taniguchi, Ryota Higuchi,
Minoru Oshima, Keiichi Okano, Seiko Hirono, Masamichi Mizuma, Koji Arihiro,
Masakazu Yamamoto, Michiaki Unno, Hiroki Yamaue, Matthew J. Weiss,
Christopher L. Wolfgang, Toru Furukawa, Hitoshi Nakagama, Bert Vogelstein,
Tohru Kiyono, Ralph H. Hruban, and Tatsuhiro Shibata
Genomic sequencing identifies ELF3 as a driver of ampullary carcinoma
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Cancer Cell, 2016, 29, 229-240
2015
Erina Takai, Yasushi Totoki, Hiromi Nakamura, Chigusa Morizane, Satoshi Nara,
Natsuko Hama, Masami Suzuki, Eisaku Furukawa, Mamoru Kato, Hideyuki
Hayashi, Takashi Kohno, Hideki Ueno, Kazuaki Shimada, Takuji Okusaka, Hitoshi
Nakagama, Tatsuhiro Shibata, and Shinichi Yachida
Clinical utility of circulating tumor DNA for molecular assessment in
pancreatic cancer
Scientific Reports, 2015, 5, 18425.1-10
Hiromi Nakamura, Yasuhito Arai, Yasushi Totoki, Tomoki Shirota, Asmaa
Elzawahry, Mamoru Kato, Natsuko Hama, Fumie Hosoda, Tomoko Urushidate,
Shoko Ohashi, Nobuyoshi Hiraoka, Hidenori Ojima, Kazuaki Shimada, Takuji
Okusaka, Tomoo Kosuge, Shinichi Miyagawa, Tatsuhiro Shibata
Genomic spectra of biliary tract cancer
Nature Genetics, 2015, 47, 1003-1010
Motonobu Saito, Yoko Shimada, Kouya Shiraishi, Hiromi Sakamoto, Koji Tsuta,
Hirohiko Totsuka, Suenori Chiku, Hitoshi Ichikawa, Mamoru Kato, Shun-ichi
Watanabe, Teruhiko Yoshida, Jun Yokota, Takashi Kohno
Development of lung adenocarcinomas with exclusive dependence on oncogene
fusions.
Cancer Research, 2015, 75, 2264-2271
Masataka Takenaka, Motonobu Saito, Reika Iwakawa, Nozomu Yanaihara, Misato
Saito, Mamoru Kato, Hitoshi Ichikawa, Tatsuhiro Shibata, Jun Yokota, Aikou
Okamoto, Takashi Kohno
Profiling of actionable gene alterations in ovarian cancer by targeted deep
sequencing.
International Journal of Oncology, 2015, 46, 2389-2398
Kousuke Ishino, Tatsuya Kato, Mamoru Kato, Tatsuhiro Shibata, Masatoshi
Watanabe, Keiji Wakabayashi, Hitoshi Nakagama, Yukari Totsuka
Comprehensive DNA adduct analysis reveals pulmonary inflammatory
response contributes to genotoxic action of magnetite nanoparticles
Int. J. Mol. Sci., 2015, 16, 3474-3492
2014
Yasushi Totoki, Kenji Tatsuno, Kyle R Covington, Hiroki Ueda, Chad J Creighton,
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Mamoru Kato, Shingo Tsuji, Lawrence A Donehower, Betty L Slagle, Hiromi
Nakamura, Shogo Yamamoto, Eve Shinbrot, Natsuko Hama, Megan Lehmkuhl,
Fumie Hosoda, Yasuhito Arai, Kim Walker, Mahmoud Dahdouli, Kengo Gotoh,
Genta Nagae, Marie-Claude Gingras, Donna M Muzny, Hidenori Ojima, Kazuaki
Shimada, Yutaka Midorikawa, John A Goss, Ronald Cotton, Akimasa Hayashi,
Junji Shibahara, Shumpei Ishikawa, Jacfranz Guiteau, Mariko Tanaka, Tomoko
Urushidate, Shoko Ohashi, Naoko Okada, Harsha Doddapaneni, Min Wang, Yiming
Zhu, Huyen Dinh, Takuji Okusaka, Norihiro Kokudo, Tomoo Kosuge, Tadatoshi
Takayama, Masashi Fukayama, Richard A Gibbs, David A Wheeler, Hiroyuki
Aburatani & Tatsuhiro Shibata
Trans-ancestry mutational landscape of hepatocellular carcinoma genomes.
Nature Genetics, 2014, 46, 1267-1273.
Tatsuji Mizukami, Kouya Shiraishi, Yoko Shimada, Hideaki Ogiwara, Koji Tsuta,
Hitoshi Ichikawa, Hiromi Sakamoto, Mamoru Kato, Tatsuhiro Shibata, Takashi
Nakano, Takashi Kohno,
Molecular mechanisms underlying oncogenic RET fusion in lung
adenocarcinoma.
Journal of Thoracic Oncology, 2014, 9, 622-630.
Shintaro Fukushima, Ayaka Otsuka, Tomonari Suzuki, Takaaki Yanagisawa,
Kazuhiko Mishima, Akitake Mukasa, Nobuhito Saito, Toshihiro Kumabe, Masayuki
Kanamori, Teiji Tominaga, Yoshitaka Narita, Soichiro Shibui, Mamoru Kato,
Tatsuhiro Shibata, Masao Matsutani, Ryo Nishikawa, Koichi Ichimura, On behalf
of the Intracranial Germ Cell Tumor Genome Analysis Consortium (iGCT
Consortium)
Mutually exclusive mutations of KIT and RAS are associated with KIT mRNA
expression and chromosomal instability in primary intracranial pure
germinomas
Acta Neuropathologica, 2014, 127, 911-925
Yusuke Suenaga, S. M. Rafiqul Islam, Jennifer Alagu, Yoshiki Kaneko, Mamoru
Kato, Yukichi Tanaka, Hidetada Kawana, Shamim Hossain, Daisuke Matsumoto,
Mami Yamamoto, Wataru Shoji, Makiko Itami, Tatsuhiro Shibata, Yohko Nakamura,
Miki Ohira, Seiki Haraguchi, Atsushi Takatori, Akira Nakagawara.
NCYM, a Cis-Antisense Gene of MYCN, Encodes a De Novo Evolved Protein
That Inhibits GSK3β Resulting in the Stabilization of MYCN in Human
Neuroblastomas.
PLoS Genetics, 2014, 10, e1003996.1-14
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2013 or before
Megha Rajaram, Jianping Zhang, Tim Wang, Jinyu Li, Cem Kuscu, Huan Qi,
Mamoru Kato, Vladimir Grubor, Robert J. Weil, Aslaug Helland, Anne-Lise
Borrenson-Dale, Kathleen R. Cho, Douglas A. Levine, Alan N. Houghton, Jedd D.
Wolchok, Lois Myeroff, Sanford D. Markowitz, Scott W. Lowe, Michael Zhang,
Alex Krasnitz, Robert Lucito, David Mu, and R. Scott Powers
Two distinct categories of focal deletions in cancer genomes.
PLoS ONE, 2013, 8, e66264.1-13.
Mamoru Kato, Seungtai Yoon, Naoya Hosono, Anthony Leotta, Jonathan Sebat,
Tatsuhiko Tsunoda, and Michael Q. Zhang
Inferring haplotypes of copy number variations from high-throughput data
with uncertainty.
G3: Genes, Genomes, Genetics, 2011, the inaugural issue, 35-42.
Mamoru Kato, Takahisa Kawaguchi, Shumpei Ishikawa, Takayoshi Umeda,
Reiichiro Nakamichi, Michael H Shapero, Keith W Jones, Yusuke Nakamura,
Hiroyuki Aburatani, and Tatsuhiko Tsunoda
Population-genetic nature of copy number variations in the human genome.
Human Molecular Genetics, 2010, 19, 761-773.
Naoya Hosono, Mamoru Kato, Kazuma Kiyotani, Taisei Mushiroda, Sadaaki Takata,
Hiroko Sato, Hanae Amitani, Yumiko Tsuchiya, Keiko Yamazaki, Tatsuhiko
Tsunoda, Hitoshi Zembutsu, Yusuke Nakamura, and Michiaki Kubo
CYP2D6 genotyping for functional-gene dosage analysis by allele copy number
detection.
Clinical Chemistry, 2009, 55, 1546-1554.
Eiichiro Nagata, Hidenori Hattori, Mamoru Kato, Saiko Ogasawara, Shigeaki
Suzuki, Mamoru Shibata, Toshihiko Shimizu, Junichi Hamada, Takashi Osada, Rie
Takaoka, Masataka Kuwana, Tatsuhiko Tsunoda, Sadakazu Aiso, Shunya Takizawa,
Norihiro Suzuki, Shigeharu Takagi
Identification of biomarkers associated with migraine with aura.
Neuroscience Research, 2009, 64, 104-110.
Mamoru Kato, Yusuke Nakamura, and Tatsuhiko Tsunoda
An algorithm for inferring complex haplotypes in a region of copy number
variation.
The American Journal of Human Genetics, 2008, 83, 157-169.
Mamoru Kato, Yusuke Nakamura, and Tatsuhiko Tsunoda
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MOCSphaser: a haplotype inference tool from a mixture of copy number
variation and single nucleotide polymorphism data.
Bioinformatics, 2008, 24, 1645-1646.
Mamoru Kato, Fuyuki Miya, Yonehiro Kanemura, Toshihiro Tanaka, Yusuke
Nakamura, and Tatsuhiko Tsunoda
Recombination rates of genes expressed in human tissues.
Human Molecular Genetics, 2008, 17, 577-586.
Mamoru Kato and Tatsuhiko Tsunoda
MotifCombinator: a web-based tool to search for combinations of
cis-regulatory motifs.
BMC Bioinformatics, 2007, 8, (100) 1-9.
Mamoru Kato, Akihiro Sekine, Yozo Ohnishi, Todd A. Johnson, Toshihiro Tanaka,
Yusuke Nakamura, and Tatsuhiko Tsunoda
Linkage disequilibrium of evolutionarily conserved regions in the human
genome.
BMC Genomics, 2006, 7, (326) 1-8.
Mamoru Kato, Naoya Hata, Nilanjana Banerjee, Bruce Futcher, and Michael Q
Zhang
Identifying combinatorial regulation of transcription factors and binding
motifs.
Genome Biology, 2004, 5, (R56) 1-13.
Mamoru Kato, Tatsuhiko Tsunoda, and Toshihisa Takagi
Inferring genetic networks from DNA microarray data by multiple regression
analysis.
Genome Informatics, 2000, 11, 118-128.
Review Articles
Mamoru Kato
The current status and future prospects of biomarker exploration for cancer
by bioinformatics analysis
Pharma Medica (in Japanese), 2016, 34, 45-51
Mamoru Kato
Data analysis of single-cell sequencing
Igaku-no Ayumi (Journal of Clinical and Experimental Medicine, in Japanese),
2016, 258, 317-323
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Mamoru Kato
Bioinformatics in cancer clinical sequencing – an emerging field of cancer
personalized medicine
Gan to Kagaku Ryouhou (Japanese Journal of Cancer and Chemotherapy, in
Japanese), 2016, 43, 391-397
Mamoru Kato
Single-cell genomics of cancer.
Igaku-no Ayumi (Journal of Clinical and Experimental Medicine, in Japanese),
2014, 249, 1088-1092
Mamoru Kato and Tatsuhiko Tsunoda
Copy number variation, structural variation, and their analysis methods.
Jikken Igaku (Experimental Medicine, in Japanese), 2009, 27, 167-174.
加藤 護、「バイオインフォマティクス解析によるがんバイオマーカー探索
の現状と今後の展望」、Pharma Medica、2016, 34, 45-51
加藤 護、「一細胞シークエンスのデータ解析」、医学のあゆみ、2016, 258,
317-323
加藤 護、「最新がん個別化医療―臨床シークエンスのバイオインフォマテ
ィクス」、癌と化学療法、2016, 43 (4), 391-397
加藤 護、「一細胞ゲノム解析」、医学のあゆみ、2014, 249, 1088-1092.
加藤 護、角田 達彦、「構造多型、特にコピー数多型とその解析法」、実験
医学、2009, 27, 167-174.
翻訳:加藤 護、「発がんドライバー変異の同定」 by David Tamborero, Abel
Gonzalez-Perez and Nuria Lopez-Bigas, 実験医学、2014, 32, 213-219
Invited Talks
Bioinformatics in Cancer Clinical Sequencing
The 53rd Annual Meeting of Japan Society of Clinical Oncology, Kyoto, Japan,
October 29-31, 2015
A bioinformatics system developed for cancer clinical sequencing in National
Cancer Center, Japan
European Society for Medical Oncology, Madrid, Spain, September 26-30, 2014.
Development of a computational system in cancer clinical sequencing.
2014 Cancer Symposium, Mokpo, Korea, April 15-19, 2014.
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Evolutionary analysis of single-cell sequencing data to detect natural selection in
tumor cells.
71nd Annual Meeting of the Japanese Cancer Association, Sapporo, Japan,
September 19-21, 2012.
Haplotype inference for copy number variations.
The 1st IFIP International Conference on Bioinformatics, Surat, India, March
25-28, 2010.
Platform Presentations
Biomarker exploration by cancer big-data analysis and clinical sequencing
CREST International Symposium on Big Data Application, Tokyo, Japan, January
11-12, 2017
Single-cell sequencing reveals genomic and transcriptomic dynamics during tumor
development in a mouse model.
75rd Annual Meeting of the Japanese Cancer Association, Yokohama, Japan,
October 6-8, 2016.
Cancer omics analysis and clinical sequencing
CREST International Symposium on Big Data Application, Tokyo, Japan, March
4-5, 2016.
Bioinformatics for cancer personalized medicine.
Kato Memorial Foundation Session in BioJapan 2015, Yokohama, Japan, October
15, 2015.
Tumor heterogeneity and single-cell sequencing (sponsored session).
74rd Annual Meeting of the Japanese Cancer Association, Nagoya, Japan, October
8-10, 2015.
Informatics for cancer clinical sequencing in National Cancer Center, Japan
74rd Annual Meeting of the Japanese Cancer Association, Nagoya, Japan, October
8-10, 2015.
Bioinformatics for clinical sequencing and single-cell sequencing.
Mathematics in Cancer Genome Analysis, Mathematical Cooperation Program
2015, Tokyo, Japan, September 30, 2015.
Tumor heterogeneity and single-cell sequencing.
Fluidigm User Meeting 2015, Tokyo, Japan, June 16, 2015.
A bioinformatics system developed for clinical sequencing in National Cancer
Center, Japan (Symposia)
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73rd Annual Meeting of the Japanese Cancer Association, Yokohama, Japan,
September 25-27, 2014.
Case report on wet-dry fusion by a dry researcher who aims at wet research goals
(Workshop)
The 36th Annual Meeting of the Molecular Biology Society of Japan, Kobe, Japan,
December 3-6, 2013.
Cancer-cell evolution revealed by observations at different time points (Symposia).
72rd Annual Meeting of the Japanese Cancer Association, Yokohama, Japan,
October 3-5, 2013.
Detection of DNA variations and fusion genes in cancer by the Ion sequencer
(sponsored session).
Joint Conference on Informatics in Biology, Medicine and Pharmacology, Tokyo,
Japan, October 14-17, 2012.
Evolutionary analysis of single-cell sequencing data in breast cancer.
Genome Informatics, Cold Spring Harbor Laboratory Meeting, New York, USA,
November 2-5, 2011.
Patterns of high-resolution recombination rates in human genes.
Biochemistry and Molecular Biology 2008, Kobe, Japan, December 9-12, 2008.
Patterns of high-resolution recombination rates in human genes.
The 53rd Annual Meeting of the Japan Society of Human Genetics, Yokohama,
Japan, September 27-30, 2008.
Integrative method for identifying combinatorial regulation of transcription factors.
The 26th Annual Meeting of the Molecular Biology Society of Japan (presentation in
symposium), Kobe, Japan, December 10-13, 2003.
Identifying combinatorial regulation of transcription factors and binding sites.
Genome Informatics, Cold Spring Harbor Laboratory Meeting, New York, U.S.A.,
May 7-11, 2003.
Inferring genetic networks from DNA microarray data by multiple regression
analysis.
The Eleventh Workshop on Genome Informatics, Tokyo, Japan, December 18-19,
2000.
Patents
2013/03: Patent granted (US)
Inventor: Mamoru Kato; Assignee: RIKEN
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“Device for the inference of haplotypes, and the program” (for the Application No.
2008-048748)
Registration No. 8401802
2012/11: Patents granted (Japan and international under the PCT)
Inventor: Mamoru Kato; Assignee: RIKEN
“Device for the inference of haplotypes, and the program” (for the international
applications below)
Registration No. 5134397 and 5129809
2008/02: Patent application (Japan)
Inventor: Mamoru Kato; Assignee: RIKEN
“Device for the inference of haplotypes, and the program (method for inferring
haplotypes from the data of copy number variations that do not have polymorphic
nucleotide bases)”
Application No. 2008-048748
2008/02: International patent application (under the PCT, the Patent
Cooperation Treaty)
Inventor: Mamoru Kato; Assignee: RIKEN
(For the two applications below: Application No. 2007-237139 and Application No.
2007-117744)
International Application No. PCT/JP2008/053567
2007/09: Patent application (Japan)
Inventor: Mamoru Kato; Assignee: RIKEN
“Device for the inference of haplotypes, and the program (supplement of
Application No. 2007-117744 below to infer alleles that are represented by integer
copy numbers)”
Application No. 2007-237139
2007/04: Patent application (Japan)
Inventor: Mamoru Kato; Assignee: RIKEN
“Device for the inference of haplotypes, and the program (method for inferring
haplotypes from the data of copy number variations that have polymorphic
nucleotide bases)”
Application No. 2007-117744
2001/08: Patent application (Japan)
Inventor: Mamoru Kato
“Computer readable medium that records a program for inferring the relations of
gene regulations from data on the expression levels and DNA sequences of genes”,
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Application No. 2001-292554
Session Chair
The 75th Annual Meeting of the Japanese Cancer Association, Yokohama, Japan,
October 6-8, 2016.
The 60th Annual Meeting of the Japan Society of Human Genetics, Tokyo, Japan,
October 14-17, 2015
The 36th Annual Meeting of the Molecular Biology Society of Japan, Kobe, Japan,
December 3-6, 2013
2012 Workshop for Young Cancer Scientists, Nagano, Japan, September 5-8, 2012
Teaching Experience
2016: Intensive lecture “Bioinformatics for cancer personalized medicine”
Tokyo Medical and Dental University, Japan
2016: Intensive lecture “Bioinformatics and cancer clinical sequencing”
Graduate School of Medicine, Nagoya University, Japan
2015: Intensive lecture “Bioinformatics for cancer personalized medicine”
Tokyo Medical and Dental University, Japan
2015: Accepting a student in Summer Program between Massachusetts Institute of
Technology and National Cancer Center Japan
2005-2007: Intensive lecture “Body plan from the genomic viewpoint” (on the
Human Genome Project, features of the human genome, post-genome research, and
useful Bioinformatics techniques)
School of Medicine, Keio University, Japan
Seminars (since Laboratory Head at NCC)
2015: “What is bioinformatics?”
Biostatistics Seminar, National Cancer Center Japan
2015: “Visit to MGH”, on clinical sequencing informatics in Massachusetts General
Hospital
International Visit Report, National Cancer Center Japan
2015: “Informatics and information system for cancer clinical sequencing”
Gakuyuukai Seminar, University of Tokyo, Japan.
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2013: “Development of a computer system for clinical sequencing and comparison
of different experimental platforms of next-generation sequencers”
Tohoku Medical Megabank Organization, Tohoku University, Japan.
2012: “Molecular evolution of cancer-cell genomes identified by single-cell
sequencing”
Faculty of Medicine, Kyoto University, Japan.
Articles reported by News Media
2008/08/01: Article on the CNV haplotype inference, in Science News (newspaper
on science news, in Japanese)
2008/07/31: Article on the CNV haplotype inference, in Fuji Sankei Business Eye
(newspaper on industry and economy, in Japanese)
2008/07/23: Article on the CNV haplotype inference, in Nikkei Business Daily
(newspaper on industry and economy, in Japanese)
Other Publications
Mamoru Kato, Naoya Hata, Nila Banerjee, and Michael Q. Zhang. Integrative
method for identifying combinatorial regulation of transcription factors. Genome
Informatics, 2003, 14, 358-359.
Mamoru Kato, Naoya Hata, Nila Banerjee, and Michael Q. Zhang. Inferring
combinatorial regulation of binding sites and transcription factors on gene
expression. Genome Informatics, 2002, 13, 303-304.
Mamoru Kato, Tatsuhiko Tsunoda, and Toshihisa Takagi. Lag analysis of genetic
networks in the cell cycle of budding yeast. Genome Informatics, 2001, 12,
266-267.
Mamoru Kato and Akira Suyama. Synonymous codon usage based on
codon-anticodon interaction energy and gene expression level. Genome Informatics,
1999, 10, 316-317.