Emerging TechnologiesSemantic Web and Data Integration
This meeting will start at 5 min past the hourAs a reminder, please place your phone on mute unless you are speaking
18 Oct 2013
Meeting Agenda
• Representing CDISC Standards in RDF - Update• Team CDISC Conformance Checks in RDF – Update• Team Protocol Representation in RDF – Update• PhUSE Conference Brussels• AOB
Representing CDISC Standards in RDF
Representing CDISC Standards in RDF
Deliverables: • CDASH v1.1 including domain assumptions• SDTM v1.2/SDTM v3.1.2 including domain assumptions• SDTM v1.3/SDTM v3.1.3 including domain assumptions• SEND IG v3.0 including domain assumptions• ADaM v2.1/ADaM IG v1.0• Integrate with Controlled Terminology
Deliverables
Schema Structure
Meta-Model Schema
Controlled Terminology Schema
CDISC Schema
CDASH Schema SDTM Schema SEND Schema ADaM Schema
CDASH SDTM SEND ADaM
SDTM Walk-Through
SDTM Walk-Through
SDTM Walk-Through
SDTM Walk-Through
SDTM Walk-Through
SDTM Walk-Through
Finishing Line
• Update a few remaining namespaces for consistency• Final check of the CDISC schema• Final check of the domain assumptions• Consistent formatting of the import files• Dirty work
– typo’s, trailing blanks, non-ASCII characters etc.• Code repository
– github.com/phuse-org/rdf.cdisc.org
GitHub Repository
Next Steps
• Call for review of draft models• Discuss ownership process with CDISC• Discuss SHARE export facility to RDF• Alignment and final edit
• Representing CDISC Conformance Checks in RDF– Scott Bahlavooni and Josephine Gough
• Protocol Representation in RDF– Geoff Low and Frederik Malfait
New Teams Starting…
• Representing and Accessing Clinical Trial Data in RDF– Tentative: Phil Ashworth and Marc Andersen
• Data Analysis and Reporting Model– To be explored
• Representing Regulations and Guidance in RDF – Status to be discussed
• EHR Enabled Research– To be explored
Pipeline
Representing Conformance Checks in RDFBackup Slides
• Represent SDTM and ADaM validation rules in RDF• Implementation algorithms will not be represented
Objective
• ADaM standard includes validation rules• Identifying all validation rules associated with an SDTM
(ADaM) domain or variable is a non-trivial, manual task• Vendor-agnostic representation of SDTM validation
rules
Rationale
• Define an ontology for validation rules• Identify version(s) of SDTM/ADaM validation rules for
representation• Link the RDF representations to CDISC standards
represented in RDF
Deliverables
Protocol Representation in RDF
Tasks
• Represent Schedule of Assessments in RDF• Represent Trial Design in RDF• Represent the PRM in RDF
Challenges
• PRM primarily BRIDG based, unlike CDASH/SDTM• End of Year, deadlines
Approach
• Read and understand– Study Design Model (XML)– Protocol Representation Model (PRM)
• Identify key components– Classes– Properties
• Model using XLSX and TopBraid
Approach (cont.)
• Consultation– Dave Gemzik (head of PRG)
• Expectations– ~ 1hr + 1hr
• Communication– PhUSE Wiki– Email– Team meetings
PhUSE Conference Brussels
What happened
• More people talking about RDF and Linked Data• Presentation Semantic Technology and CDISC Standards• PhUSE CSS Discussion Club