+ All Categories
Home > Documents > Evidence for a founder effect for pseudoxanthoma elasticum in the Afrikaner population of South...

Evidence for a founder effect for pseudoxanthoma elasticum in the Afrikaner population of South...

Date post: 25-Aug-2016
Category:
Upload: sharon
View: 217 times
Download: 3 times
Share this document with a friend
8
Abstract Pseudoxanthoma elasticum (PXE) is a herita- ble elastic tissue disorder recently shown to be attribut- able to mutations in the ABCC6 (MRP6) gene. Whereas PXE has been identified in all ethnic groups studied to date, the prevalence of this disease in various populations is uncertain, although often assumed to be similar. A no- table exception however is the prevalence of PXE among South African Afrikaners. A previous report has sug- gested that a founder effect may explain the higher preva- lence of PXE in Afrikaners, a European-derived popula- tion that first settled in South Africa in the 17th century. To investigate this hypothesis, we performed haplotype and mutational analysis of DNA from 24 South African families of Afrikaner, British and Indian descent. Among the 17 Afrikaner families studied, three common haplo- types and six different disease-causing variants were iden- tified. Three of these mutant alleles were missense vari- ants, two were nonsense mutations and one was a single base-pair insertion. The most common variant accounted for 53% of the PXE alleles, whereas other mutant alleles appeared at lower frequencies ranging from 3% to 12%. Haplotype analysis of the Afrikaner families showed that the three most frequent mutations were identical-by-de- scent, indicating a founder origin of PXE in this popula- tion. Introduction Pseudoxanthoma elasticum (PXE, MIM 177850, MIM 264800) is a heritable connective tissue disorder charac- terized by the accumulation of morphologically abnormal and mineralized elastic fibres in dermal, cardiovascular and ocular tissues (Uitto and Shamban 1987). The dermal phenotype is the most prevalent characteristic of PXE and is frequently associated with dramatic ocular and vascular symptoms (Nishida et al. 1990; Lebwohl et al. 1993; Weenink et al. 1996). Abnormally calcified elastic fibres accumulate in the mid-dermis typically producing yellow- ish papules associated with laxity and loss of elasticity and are mainly located within flexural areas particularly the neck, axilla, antecubital fossa and groin (Uitto and Shamban 1987; Neldner 1988; Uitto et al. 1998). Similar arterial changes within the internal elastic lamina fre- quently cause premature peripheral vascular occlusive disease (Nishida et al. 1990; Lebwohl et al. 1993). An- gioid streaks, the other hallmark of PXE, result from the fragmentation and calcification of elastic fibres within Bruch’s membrane. These changes in this elastic mem- Olivier Le Saux · Konstanze Beck · Christine Sachsinger · Carina Treiber · Harald H. H. Göring · Katie Curry · Eric W. Johnson · Lionel Bercovitch · Anna-Susan Marais · Sharon F. Terry · Denis L. Viljoen · Charles D. Boyd Evidence for a founder effect for pseudoxanthoma elasticum in the Afrikaner population of South Africa Hum Genet (2002) 111 : 331–338 DOI 10.1007/s00439-002-0808-1 Received: 17 April 2002 / Accepted: 8 July 2002 / Published online: 7 September 2002 ORIGINAL INVESTIGATION Electronic-database information: accession numbers and URLs for data in this article are as follows: Online Mendelian Inheritance in Man (OMIM), http://www.ncbi. nlm.nih.gov/Omim/ (for PXE [MIM 177850, MIM 264800]) Genbank (for BAC clone CIT987SK-A-962B4 [accession number U91318], for ABCC6 cDNA [accession number NM_001171], for PPOX cDNA [accession number U26446], for FANCC cDNA [accession number XM_047190], for FANCA cDNA [accession number NM_000135]) The mutations reported here have been submitted to the Human Gene Mutation Database (HGMD, http://archive.uwcm.ac.uk/ uwcm/mg/hgmd0.html), temporary accession number H972168 O.Le Saux · K. Beck · C. Sachsinger · C. Treiber · C.D. Boyd () Pacific Biomedical Research Center, University of Hawai’i, Honolulu, Hawaii, USA e-mail: [email protected], Tel.: +1-808-9566341, Fax: +1-808-9569481 H.H.H. Göring Department of Genetics, Southwest Foundation for Biomedical Research, San Antonio, Tex., USA K. Curry · E.W. Johnson Barrow Neurological Institute, Phoenix, Ariz., USA L. Bercovitch Department of Dermatology, Brown University, Providence, R.I., USA A.-S. Marais PXE International (South Africa), Mowbray, South Africa S.F. Terry PXE International, Sharon, Mass., USA D.L. Viljoen Department of Human Genetics, University of Witwatersrand, Johannesburg, South Africa © Springer-Verlag 2002
Transcript
Page 1: Evidence for a founder effect for pseudoxanthoma elasticum in the Afrikaner population of South Africa

Abstract Pseudoxanthoma elasticum (PXE) is a herita-ble elastic tissue disorder recently shown to be attribut-able to mutations in the ABCC6 (MRP6) gene. WhereasPXE has been identified in all ethnic groups studied todate, the prevalence of this disease in various populationsis uncertain, although often assumed to be similar. A no-table exception however is the prevalence of PXE amongSouth African Afrikaners. A previous report has sug-

gested that a founder effect may explain the higher preva-lence of PXE in Afrikaners, a European-derived popula-tion that first settled in South Africa in the 17th century.To investigate this hypothesis, we performed haplotypeand mutational analysis of DNA from 24 South Africanfamilies of Afrikaner, British and Indian descent. Amongthe 17 Afrikaner families studied, three common haplo-types and six different disease-causing variants were iden-tified. Three of these mutant alleles were missense vari-ants, two were nonsense mutations and one was a singlebase-pair insertion. The most common variant accountedfor 53% of the PXE alleles, whereas other mutant allelesappeared at lower frequencies ranging from 3% to 12%.Haplotype analysis of the Afrikaner families showed thatthe three most frequent mutations were identical-by-de-scent, indicating a founder origin of PXE in this popula-tion.

Introduction

Pseudoxanthoma elasticum (PXE, MIM 177850, MIM264800) is a heritable connective tissue disorder charac-terized by the accumulation of morphologically abnormaland mineralized elastic fibres in dermal, cardiovascularand ocular tissues (Uitto and Shamban 1987). The dermalphenotype is the most prevalent characteristic of PXE andis frequently associated with dramatic ocular and vascularsymptoms (Nishida et al. 1990; Lebwohl et al. 1993;Weenink et al. 1996). Abnormally calcified elastic fibresaccumulate in the mid-dermis typically producing yellow-ish papules associated with laxity and loss of elasticityand are mainly located within flexural areas particularlythe neck, axilla, antecubital fossa and groin (Uitto andShamban 1987; Neldner 1988; Uitto et al. 1998). Similararterial changes within the internal elastic lamina fre-quently cause premature peripheral vascular occlusivedisease (Nishida et al. 1990; Lebwohl et al. 1993). An-gioid streaks, the other hallmark of PXE, result from thefragmentation and calcification of elastic fibres withinBruch’s membrane. These changes in this elastic mem-

Olivier Le Saux · Konstanze Beck · Christine Sachsinger ·Carina Treiber · Harald H. H. Göring · Katie Curry ·Eric W. Johnson · Lionel Bercovitch · Anna-Susan Marais ·Sharon F. Terry · Denis L. Viljoen · Charles D. Boyd

Evidence for a founder effect for pseudoxanthoma elasticum in the Afrikaner population of South Africa

Hum Genet (2002) 111 :331–338DOI 10.1007/s00439-002-0808-1

Received: 17 April 2002 / Accepted: 8 July 2002 / Published online: 7 September 2002

ORIGINAL INVESTIGATION

Electronic-database information: accession numbers and URLsfor data in this article are as follows:Online Mendelian Inheritance in Man (OMIM), http://www.ncbi.nlm.nih.gov/Omim/ (for PXE [MIM 177850, MIM 264800])Genbank (for BAC clone CIT987SK-A-962B4 [accession numberU91318], for ABCC6 cDNA [accession number NM_001171], forPPOX cDNA [accession number U26446], for FANCC cDNA[accession number XM_047190], for FANCA cDNA [accessionnumber NM_000135])The mutations reported here have been submitted to the HumanGene Mutation Database (HGMD, http://archive.uwcm.ac.uk/uwcm/mg/hgmd0.html), temporary accession number H972168

O.Le Saux · K. Beck · C. Sachsinger · C. Treiber · C.D. Boyd (✉)Pacific Biomedical Research Center, University of Hawai’i, Honolulu, Hawaii, USAe-mail: [email protected], Tel.: +1-808-9566341, Fax: +1-808-9569481

H.H.H. GöringDepartment of Genetics, Southwest Foundation for Biomedical Research, San Antonio, Tex., USA

K. Curry · E.W. JohnsonBarrow Neurological Institute, Phoenix, Ariz., USA

L. BercovitchDepartment of Dermatology, Brown University, Providence, R.I., USA

A.-S. MaraisPXE International (South Africa), Mowbray, South Africa

S.F. TerryPXE International, Sharon, Mass., USA

D.L. ViljoenDepartment of Human Genetics, University of Witwatersrand, Johannesburg, South Africa

© Springer-Verlag 2002

Page 2: Evidence for a founder effect for pseudoxanthoma elasticum in the Afrikaner population of South Africa

brane result in subretinal neovascularization, haemor-rhage and, in many cases, the severe loss of central vision(Weenink et al. 1996).

The mutational analysis of several candidate genes at16p13.1 (Le Saux et al. 1999; Cai et al. 2000) recently re-vealed mutations responsible for PXE in a gene encodingthe ATP-binding cassette sub-family C, member 6 (ABCC6),also known as multidrug-resistance associated protein 6(Bergen et al. 2000; Germain et al. 2000; Le Saux et al.2000; Ringpfeil et al. 2000; Struk et al. 2000). To date,more than 50 mutations, mostly clustered in a region ofthe gene encoding the carboxy-terminal end of ABCC6,have been characterized (Le Saux et al. 2001; Meloni etal. 2001; Pulkkinen et al. 2001).

The genetics and disease characteristics of PXE havebeen largely studied to date in populations of Caucasianorigin. The prevalence of PXE among the Caucasians hasbeen reported to be approximately 1:100,000 live births(Neldner 1988). A similar prevalence of PXE has beennoted in Japan (Katagiri 1991). In a preliminary study,Viljoen (1991) found considerable variation of the preva-lence of this disease between different racial groups inSouth Africa. Torrington and Viljoen (1991) and Viljoen(1991) notably reported a prevalence of 1/650,000 in theblack population in the Cape Province of South Africaand a much higher prevalence of 1/23,000 in the Afrikanercommunity of the Cape Province.

The Afrikaner population is of Dutch, German andFrench Huguenot descent and has its origins in the firstEuropean immigrant settlements at the Cape of GoodHope during the 17th century (Viljoen 1991). Torringtonand Viljoen (1991) have proposed that the basis for thehigh prevalence of PXE in the Afrikaner population is afounder effect, similar to that of other rare disorders thatappear at higher frequencies in this population (Botha andBeighton 1983). An initial genealogical study traced theancestry of 20 present-day families with PXE back to po-tentially only four individuals, suggesting that this disor-der is most likely derived from these original founders inSouth Africa (Torrington and Viljoen 1991). To study thispossibility further, we have carried out haplotype and mu-tational analyses in 17 of the 20 Afrikaner families origi-nally analysed.

Subjects and methods

Patients

The DNA of individuals examined in this study was collected inSouth Africa by D.L.V., A.S.M., S.T. and L.B. on behalf of PXEInternational. The diagnosis of PXE in all unrelated individualswas consistent with previously reported consensus criteria (Chris-tiano et al. 1992). The affected status of an individual was basedupon the presence of dermal lesions, ocular symptoms and cardio-vascular findings and was confirmed by positive von Kossa stain-ing of a skin biopsy. Blood samples were obtained from affectedand unaffected individuals who provided informed consent. Thecollection of blood following informed consent was carried out infull compliance with all established NIH guidelines. GenomicDNA was isolated from EDTA-treated whole blood and purifiedwith a Gentra DNA isolation kit (Gentra Systems, Minneapolis,

Minn.) according to the manufacturer’s instructions. Purified DNAwas stored at –80°C in 1 mM TRIS-HCl, 0.1 mM EDTA, pH 8.0.

Polymerase chain reaction and DNA sequence analysis

All 31 exons of ABCC6 were polymerase chain reaction (PCR)-amplified from DNA obtained from the PXE individuals and froma control DNA panel obtained from 54 unaffected and unrelatedAfrikaners. Primers for PCR amplification for all ABCC6 exonswere synthesized based on sequence information obtained frombacterial artificial chromosome (BAC) clone CIT987SK-A-962B4(Genbank accession number U91318; Le Saux et al. 2001). Typi-cal PCR reactions have been described elsewhere (Le Saux et al.1999). PCR products, typically 150–550 bp in length (includingcomplete intron/exon boundaries), were analysed either by single-strand conformation polymorphism analysis (Orita et al. 1989), byconformation-sensitive gel electrophoresis (Ganguly et al. 1993)or by direct sequencing of ABCC6 coding regions. The criteria fordefining whether an allele was disease-causing or a neutral orsilent variant were as previously described (Le Saux et al. 2001).DNA sequence analysis was performed by using ABI BigDye ter-minator cycle sequencing with an ABI310 automated DNA se-quencer.

Haplotype analysis

Haplotype analysis was performed by using previously describedmethods and a set of microsatellite markers spanning region p13.1of chromosome 16 (Le Saux et al. 1999, 2001). Radiolabelled PCRproducts were analysed by autoradiography following elec-trophoresis on 6% polyacrylamide gels containing 6 M urea,37.5% formamide and TBE buffer (0.09 M TRIS, 0.09 M boricacid, 0.01 M EDTA pH 8.0). Electrophoresis was conducted at 80 W for 4–6 h and gels were then dried and exposed to autoradi-ographic film at –80°C for 8-72 h. The genotypes of the variousfamily members were determined “blind” without prior informa-tion describing individual affectation status. Analysis of haplo-types was performed both manually and by using the haplotypesub-routine of the Cyrillic software package (Cherwell Scientific,Buckinghamshire, UK).

Results

Identification ABCC6 gene mutations in Afrikaner PXE patients

To identify the Afrikaner PXE mutations, we screened all31 exons of the ABCC6 gene in DNA samples from 17 ofthe 20 Afrikaner PXE patients and their family memberspreviously examined by Torrington and Viljoen (1991).We also analysed DNA samples from seven other SouthAfrican PXE patients and their family members. ThesePXE families were of black South African, Indian andBritish ancestries.

Among the Afrikaners, six different mutant alleleswere detected (Table 1). One missense allele, R1339C,represented more than half (53%) the total number ofAfrikaner mutant alleles (Table 2). Other ABCC6 mutantalleles included two missense mutations, R1138Q andL673P, which occurred at frequencies of 8.8% (3 out of 34 alleles) and 2.9% (1 out of 34 alleles), respectively.Two nonsense variants (Y768X and R1141X) and a singleframeshift mutation (939insT) were also identified (Table 1). The latter mutant alleles occurred at frequencies

332

Page 3: Evidence for a founder effect for pseudoxanthoma elasticum in the Afrikaner population of South Africa

of 11.8% (4 out of 34 alleles), 5.9% (2 out of 34 alleles)and 2.9% (1 out of 34 alleles), respectively (Table 2). Twoof the mutations found in the Afrikaner group, R1141Xand 939insT, were also found in PXE individuals ofBritish ancestries (Tables 1, 2). One of the latter individu-als (from Family 212) carried the R1141X allele in asso-ciation with 939insT. The two 939insT alleles found inAfrikaner and British PXE individuals were most proba-bly identical-by-descent as they occurred in a conserved

haplotype shared by Family 212 (British ancestry) andFamily 213 (Afrikaner), as discussed below. Moreover,two of the four R1141X alleles found in Afrikaner andBritish individuals occurred in similar haplotypes, alsosuggesting a possible consanguineous relationship be-tween Family 206 (Afrikaner) and Family 216 (British an-cestry). The remaining R1141X mutations, characterizedin Family 224 (Afrikaner) and Family 212 (British ances-try) were found in different haplotypes indicating that

333

Table 1 ABCC6 mutations identified in a cohort of South African PXE patients of Afrikaner and other ancestries (nt nucleotide, aa amino acid, ni not identified, UK United Kingdom, Black black South Africans)

Family Allele 1 Allele 2 Ancestry

nt change aa change Exon Haplotype nt change aa change Exon Haplotype

201 4015C→T R1339C 28 I 4015C→T R1339C 28 I Afrikaner203 4015C→T R1339C 28 I 3413G→A R1138Q 24 III Afrikaner205 3413G→A R1138Q 24 III 2304C→A Y768X 18 II Afrikaner206 4015C→T R1339C 28 I 3421C→T R1141X 24 Other Afrikaner208 4015C→T R1339C 28 I 4015C→T R1339C 28 I Afrikaner209 4015C→T R1339C 28 I 2018T→C L673P 16 Other Afrikaner211 4015C→T R1339C 28 I 3413G→A R1138Q 24 III Afrikaner222 4015C→T R1339C 28 I 4015C→T R1339C 28 I Afrikaner223 4015C→T R1339C 28 I 2304C→A Y768X 18 II Afrikaner225 4015C→T R1339C 28 I 4015C→T R1339C 28 I Afrikaner226 4015C→T R1339C 28 I 2304C→A Y768X 18 II Afrikaner228 4015C→T R1339C 28 I 2304C→A Y768X 18 II Afrikaner229 4015C→T R1339C 28 I 4015C→T R1339C 28 I Afrikaner213 939insT Frameshift 8 Other ni ni ni Other Afrikaner214 4015C→T R1339C 28 I ni ni ni Other Afrikaner224 3421C→T R1141X 24 Other ni ni ni Other Afrikaner204 ni ni Other ni ni ni Other Afrikaner212 3421C→T R1141X 24 Other 939insT Frameshift 8 Other UK215 3775delT Frameshift 27 Other 4104delC Frameshift 29 Other UK217 ABCC6del15 Frameshift 15 Other ABCC6del15 Frameshift 15 Other Indian207 3088C→T R1030X 23 Other ni ni ni Other UK216 3421C→T R1141X 24 Other ni ni ni Other UK219 1553G→A R518Q 12 Other ni ni ni Other UK221 ni ni Other ni ni ni Other Black

Table 2 Frequencies of mu-tant ABCC6 alleles found in acohort of PXE patients ofAfrikaner and other ancestries(? unidentified alleles, MDRmutation detection rate)

Mutation Overall Afrikaner ancestries Others ancestries

Allele Allele Allele Allele Allele Allele count frequency (%) count frequency (%) count frequency (%)

R1339C 18 37.5 18 52.9 0 0Y768X 4 8.3 4 11.8 0 0R1141X 4 8.3 2 5.9 2 14.3R1138Q 3 6.3 3 8.8 0 0939insT 2 4.2 1 2.9 1 7.1ABCC6del15 2 4.2 0 0.0 2 14.3L673P 1 2.1 1 2.9 0 0.0R1030X 1 2.1 0 0.0 1 7.1R518Q 1 2.1 0 0.0 1 7.13775delT 1 2.1 0 0.0 1 7.14104delC 1 2.1 0 0.0 1 7.1? 10 20.8 5 14.7 5 35.7Total 48 100.0 34 100.0 14 100.0MDR 79.2 85.3 64.3

Page 4: Evidence for a founder effect for pseudoxanthoma elasticum in the Afrikaner population of South Africa

these alleles were either of independent origin or that theirco-ancestry was obscured by historical recombination andmutation events (Le Saux et al. 2001). Several other mu-tant alleles in compound heterozygous or homozygousstates were characterized in the seven non-Afrikaner indi-viduals examined (Table 1). Some of these mutant alleleshad been previously identified in other patient cohorts (LeSaux et al. 2001; Ringpfeil et al. 2001) and a homozygousABCC6del15 allele was found in a single consanguineousfamily of Indian origin (Table 1). This AluSx mediateddeletion encompassed 1583 nucleotides from IVS14+1530to IVS15+949 deleting all of exon 15, and corresponded

to an out-of-frame deletion creating a premature stop-codonat position 624 (Le Saux et al. 2001).

Haplotype analysis of Afrikaner pedigrees

Thirteen different haplotypes were characterized in PXEpatients from the 17 Afrikaner families that we examinedby mutation analysis. Three major haplotypes, with somevariation at single markers, encompassing the PXE locus(located between markers D16S405 and D16S764; LeSaux et al. 1999; Cai et al. 2000) were identified (Fig. 1)and three disease alleles (R1339C, Y768X, R1138Q) werefound to be strictly associated with these three haplotypes(referred to as types I, II and III; Fig.1).

Haplotypes I, II and III were found either in combina-tion or in a homozygous state in 14 of the 17 PXE probands.One of the haplotypes (type I), which corresponded to astretch of 10 consecutive markers (D16S680 to D16S3017),was found in 13 of these apparently unrelated PXE indi-viduals. Five affected individuals presented this type Ihaplotype in a homozygous state and eight individuals

334

Fig.1 Haplotype analysis of a cohort of Afrikaner individualswith PXE. Haplotype studies were performed with 17 D16S poly-morphic markers spanning approximately 25 cM of 16p13.1.Three haplotypes (types I, II, III) are presented together with theassociated mutant alleles. Afrikaner families are numbered201–229. Markers indicated in bold define the conserved regions(boxed) that are likely to be derived from the three founderAfrikaner individuals. Underlined numbers Divergent markerswithin the conserved haplotype regions, asterisk an ambiguousgenotype

Page 5: Evidence for a founder effect for pseudoxanthoma elasticum in the Afrikaner population of South Africa

were heterozygous. The other two haplotypes (types IIand III), which corresponded to stretches of 12 and 11consecutive markers (D16S680 to D16S417 and D16S497to D16S3103, respectively), were only found in heterozy-gous states in three and four unrelated individuals, respec-tively (Fig.1). Some affected individuals with haplotypestype I and III shared five non-consecutive markers distalto the PXE locus (from D16S497 to D16S3127) suggest-ing that recombination occurred between these chromo-somes. The three conserved haplotypes (types I, II and III)were not found in any of the DNA samples obtained fromindividuals of British, Indian or black South African an-cestries.

A family of Afrikaner origin (Family 213) and a fam-ily of British ancestry (Family 212) both displayed a com-mon haplotype at seven consecutive markers telomeric tothe PXE locus (D16S407 to D16S3127) and presentedseveral other alleles in common with two of the three hap-lotypes. This region was most probably inherited identi-cal-by-descent. This shared haplotype between both fami-lies suggests some cross-cultural admixture between Eng-lish and Afrikaner settlers and indeed, such inter-mar-riages were not uncommon in the later evolution of SouthAfrican European-derived communities in the 19th and20th centuries (Beighton 1976; Viljoen 1991).

The three disease alleles, R1339C, Y768X, and R1138X,associated with the type I, II and III haplotypes representthree ancestral founder alleles from which 74% of the

Afrikaner alleles have descended. It is highly likely thatthese three alleles were introduced into the Afrikaner pop-ulation from founder settlers.

All other mutated alleles, R1141X, L673P, 939insTand particularly the five unidentified mutations, werefound in divergent haplotypes. The latter three alleles(R1141X, L673P and 939insT) could have been intro-duced by founder individuals or could represent de novomutation events in the Afrikaner population. Alterna-tively, these mutations could have been introduced intothe Afrikaner gene pool through cross-cultural marriageswith other populations groups.

No ABCC6 mutations were found in an Afrikaner fam-ily (Family 204) and a family of South African black an-cestry (Family 221). Although it is possible that PXE inthese families could be attributable to mutations in a geneother than the ABBC6 gene, to date all reported linkageand mutational studies have demonstrated that the PXEphenotype develops as a consequence of ABCC6 muta-tions (Le Saux et al. 2001). It is probable therefore thatmutations in the ABCC6 gene that we have not yet de-tected will be responsible for PXE in these two familiesand, moreover, that the second alleles that have not yetbeen identified in other, apparently heterozygous, PXEpatients will also be mutations in the ABCC6 gene.

335

Table 3 Silent and neutralvariants identified in theABCC6 gene in a cohort of 24South African patients withPXE (hm homozygote, ht het-erozygote, aa amino acidchanges, nt nucleotide changes,i- the intron in which the vari-ant is located, No. of allelesnumber of variants found inthe 48 PXE chromosomesanalysed in this study

aVariants identified by se-quencing only; variants identi-fied in either or both ABCC6pseudogenes have not been in-dicated in this table

aa nt Status Exon Origin No. of alleles

G61D 182G→A ht 2 Afrikaner 1T215T 645G→A ht 6 Afrikaner 2K281Ea 841A→G ht, hm 8 Afrikaner, UK 2T285Ta 855C→T ht, hm 8 Afrikaner, UK 2I319Va 955A→G ht, hm 8 Afrikaner, UK 2N411N 1233T→C ht, hm 10 Afrikaner, UK 20V415V 1245G→A ht, hm 10 All 20none IVS11+73G→C ht i-11 Afrikaner, UK 2none IVS11-45C→A ht i-11 UK 1none IVS11-41A→G ht, hm i-11 Afrikaner, UK 5none IVS11-22C→A ht i-11 Afrikaner 1V614A 1841T→C ht, hm 14 All 16T630Ta 1890C→G ht, hm 15 Afrikaner, UK 11H632Qa 1896C→A ht, hm 15 Afrikaner, UK 11A830A 2490C→T ht, hm 19 Afrikaner, UK 6none IVS21+30G→A ht i-21 UK 2P945P 2835C→T ht, hm 22 Indian, UK 3none IVS22-5delTCCC-8 ht i-22 UK 1none IVS24-16T→C ht i-24 UK 1none IVS24-3C→T ht i-24 AFK 1none IVS25+55T→C ht i-25 Afrikaner, UK 8none IVS25+90G→A ht, hm i-25 All 21R1268Q 3803G→A ht, hm 27 Afrikaner, UK 4none IVS27-6G→A ht i-27 Afrikaner 1none IVS28+49C→T ht, hm i-28 Afrikaner 18I1350L 4048A→C ht 29 UK 1none 3’ UTR+17G→A ht 3’UTR Afrikaner 2

Page 6: Evidence for a founder effect for pseudoxanthoma elasticum in the Afrikaner population of South Africa

Silent and neutral variants of ABCC6

An additional 27 variants, assumed to be neutral or silent,were identified in the course of the ABCC6 screening ofour cohort of 24 South African PXE individuals (Table 3).These variants did not reveal any clustering or an evidentethnic segregation. Of these nucleotide changes, 21 wereprobably silent variants (unlikely to influence the pheno-type) as they occurred in either non-coding regions (14variants) or did not modify the encoded amino acid. Sixother variants (G61D, K281E, I319V, V614A, H632Q andR1268Q) resulted in amino acid changes but appeared notto segregate with the disease in PXE pedigrees and weretherefore likely to be neutral. Although variant G61D rep-resents a significant amino acid change, this allele wasfound in an Afrikaner patient homozygous for the muta-tion R1339C and was therefore considered to be a neutralvariant. It is noteworthy that one silent variant (IVS28+49C→T) co-segregated with the R1339C alleles, as it wasfound in very close proximity (76 bp) to the 4015C→Tsubstitution responsible for the arginyl to cysteinyl change(Tables 1, 3). No variants were found to co-segregate withthe two other founder alleles R1138Q and Y768X.

The prevalence of PXE in the Afrikaner population

In our previous studies (Le Saux et al. 2000, 2001), ouroverall criteria for defining a disease allele included thepre-requisite that such an allele would not be present incontrol chromosomes derived from unaffected individu-als. As the occasional presence of disease alleles in a het-erozygous state among unaffected individuals is verylikely in the largely consanguineous Afrikaner population,this rule cannot be applied in the present study. Indeed,upon screening the ABCC6 gene in the 54 unaffectedAfrikaner controls used in this study, two mutant alleleswere identified. R1139C and an out-of-frame 25-bp dele-tion (865-889del) were found in a heterozygous state intwo apparently unrelated individuals. Although 865-889delwas not identified in the 34 chromosomes analysed inAfrikaner PXE patients, data from the present study andprevious results (Le Saux et al. 2001) indicated thatR1339C is disease-causing and represents the most preva-lent founder mutation found to date among South AfricanAfrikaners.

From the presence of a single R1339C allele in ourcontrol panel of 54 apparently unrelated and unaffectedAfrikaners, we cannot calculate an accurate estimate ofprevalence of these founder mutations in the Afrikanerpopulation, as a much larger cohort of Afrikaners willneed to be screened. It is encouraging however that, inonly 108 chromosomes, a founder mutant was observed.This suggests that the prevalence of PXE, propagated byat least the three founder alleles that we have identified todate in the South African Afrikaners, will indeed be rela-tively high.

Discussion

The present study describes the identification of threePXE disease alleles, R1339C, Y768X and R1138Q, whichare associated with three conserved haplotypes (types I, IIand III) and which account for 74% of the PXE disease al-leles among South African Afrikaners. These alleles arenot found in patients of other ancestries in South Africa.Our findings suggest that at least 14 of the 17 AfrikanerPXE patients were derived from three common ancestorsand these results are consistent with a founder effect in theAfrikaner population of South Africa with PXE as origi-nally proposed by Torrington and Viljoen (1991). How-ever, the authors of the original founder hypothesis wereunable clearly to establish independent lineages betweenfour suspected founder individuals (Torrington andViljoen 1991; Viljoen 1991). The present results suggestthat at least three separate founder individuals carryingmutant ABCC6 alleles settled in the area of the CapeProvince. It is probable that these European-derived indi-viduals brought these mutant alleles into the emergingAfrikaner population (and represent therefore true founders),although it is possible that any one of these mutationscould also have been created de novo in the Afrikanercommunity. Identification of these mutant alleles withinthe appropriate haplotypes in ancestral European commu-nities should confirm on which continent these allelesoriginated.

There are multiple examples of heritable recessive dis-orders with unusually high prevalence in the Afrikaners ofSouth Africa, most (if not all) of which are the result offounder effects. Familial hypercholesterolaemia is themost extensively studied with a prevalence of 1/80 amongthe Afrikaans-speaking population in South Africa, com-pared with 1/500 in other communities (Jooste et al. 1986;Steyn et al. 1996). Three founder mutations, D206E,V408M, and D154N, have been identified in the low-den-sity lipoprotein receptor gene (Leitersdorf et al. 1989;Kotze et al. 1989, 1991) and represent 90% of all muta-tions detected in this gene within this Afrikaner cohort.Another example of a founder effect that results in an in-creased prevalence of a disorder in Afrikaners is por-phyria variegata. More than 95% of porphyria families ofAfrikaner origin carry an R59W variant of the PPOX gene(Meissner et al. 1996). Fanconi anaemia, a rare autosomalrecessive disorder, also has a high prevalence in Ashke-nazi Jews and Afrikaners. Among Ashkenazi Jews, mostcases of Fanconi anaemia are caused by a single splicesite mutation in the FANCC gene (Whitney et al. 1993).Among South African Afrikaners, a recent molecular andgenealogical study has revealed a strict association be-tween mutations in the FANCA gene and conserved haplo-types on chromosome 16, with the most frequent mutationin the FANCA gene accounting for 60% of the disease al-leles (Tipping et al. 2001).

As a heritable disease, PXE demonstrates a high de-gree of variable expression. Earlier literature has sug-gested, for example, multiple clinical types of PXE, in-

336

Page 7: Evidence for a founder effect for pseudoxanthoma elasticum in the Afrikaner population of South Africa

cluding a clinically distinct form of PXE in patients ofAfrikaner origin (Viljoen et al. 1987). Both dominant andrecessive forms of PXE have also been reported, al-though, to date, no dominant forms of PXE have beenconfirmed to segregate with known ABCC6 mutations.Whereas the mutational data accumulated to date suggeststhat most (if not all) cases of PXE are attributable to mu-tations within the ABCC6 gene, it is not yet clear whetherdifferent ABCC6 mutations contribute to the variable ex-pression of the PXE phenotype. Moreover, it is also un-clear (but highly likely) whether the penetrance of ABCC6mutations may be influenced by epigenetic or environ-mental factors (Uitto et al. 2001). Some preliminary evi-dence, for example, suggests that calcium intake in child-hood may be a factor influencing phenotypic severity inadult PXE patients (Renie et al. 1984).

The identification of founder ABCC6 mutations withinthe Afrikaner population should afford diagnostic oppor-tunities that will assist in the treatment of PXE within apopulation in which the disease is far more prevalent thanother population groups studied to date. The high fre-quency of a small number of founder ABCC6 mutationswithin a relatively homogenous population (Gordon et al.2000) should also provide the opportunity, within anAfrikaner cohort, to dissect out the influence of variousABCC6 mutations on penetrance and/or expression of thePXE phenotype. The Afrikaner PXE population may alsoafford the opportunity for studying the epigenetic influ-ences on a select number of ABCC6 mutant alleles; thesecould be crucial not only for the treatment of PXE withinSouth Africa but also for PXE patients in other communi-ties.

Acknowledgements We are very grateful to all affected individ-uals and their relatives for their cooperation in making this studypossible. We also thank the other members of the PXE Interna-tional Research Consortium, particularly Patrick Terry. This workwas supported by NIH grants EY13019 and RR16453 to C.B. andan RCMI (Research Centers in Minority Institutions) grant fromNCRR (RR03061) to the Pacific Biomedical Research Center ofthe University of Hawaii.

References

Beighton P (1976) Genetic disorders in Southern Africa. S AfrMed J 50:1125–1128

Bergen AA, Plomp AS, Schuurman EJ, Terry S, Breuning M,Dauwerse H, Swart J, Kool M, Soest S van, Baas F, Brink JBten, Jong PT de (2000) Mutations in ABCC6 cause pseudoxan-thoma elasticum. Nat Genet 25:228–231

Botha MC, Beighton P (1983) Inherited disorders in the Afrikanerpopulation of southern Africa. Part I. Historical and demo-graphic background, cardiovascular, neurological, metabolicand intestinal conditions. S Afr Med J 64:609–612

Cai L, Struk B, Adams MD, Ji W, Haaf T, Kang HL, Dho SH, etal (2000) A 500-kb region on chromosome 16p13.1 containsthe pseudoxanthoma elasticum locus: high-resolution mappingand genomic structure. J Mol Med 78:36–46

Christiano AM, Lebwohl MG, Boyd CD, Uitto J (1992) Workshopon pseudoxanthoma elasticum: molecular biology and pathol-ogy of the elastic fibers. J Invest Dermatol 99:660–663

Ganguly A, Rock MJ, Prockop DJ (1993) Conformation-sensitivegel electrophoresis for rapid detection of single-base differ-ences in double-stranded PCR products and DNA fragments:evidence for solvent-induced bends in DNA heteroduplexes.Proc Natl Acad Sci USA 90:10325–10329

Germain DP, Perdu J, Remones V, Jeunemaitre X (2000) Ho-mozygosity for the R1268Q mutation in MRP6, the pseudo-xanthoma elasticum gene, is not disease-causing. Biochem Bio-phys Res Commun 274:297–301

Gordon D, Simonic I, Ott J (2000) Significant evidence for linkagedisequilibrium over a 5-cM region among Afrikaners. Ge-nomics 66:87–92

Jooste PL,Benadé AJS, Rossouw JE (1986) Prevalence of familialhypercholesterolaemia in three rural South African communi-ties. S Afr Med J 69:548–551

Katagiri K, Fujiwara S, Shinkai H, Takayasu S (1991) Hetero-geneity of clinical features of pseudoxanthoma elasticum:analysis of thirteen cases in Oita Prefecture from a populationof 1,240,000. J Dermatol 18:211–217

Kotze MJ, Langenhoven E, Warnich L, Plessis L du, Marx MP,Oosthuizen CJ, Retief AE (1989) The identification of twolow-density lipoprotein receptor gene mutations in SouthAfrican familial hypercholesterolaemia. S Afr Med J 76:399–401

Kotze MJ, Langenhoven E, Warnich L, Plessis L du, Retief AE(1991) The molecular basis and diagnosis of familial hyper-cholesterolaemia in South African Afrikaners. Ann Hum Genet55:115–121

Le Saux O, Urban Z, Göring HHH, Csiszar K, Pope FM, RichardsA, Pasquali-Ronchetti I, Terry S, Bercovitch L, Lebwohl MG,Breuning M, Berg P van den, Kornet L, Doggett N, Ott J, JongPT de, Bergen AA, Boyd CD (1999) Pseudoxanthoma elas-ticum maps to an 820-kb region of the p13.1 region of chromo-some 16. Genomics 62:1–10

Le Saux O, Urban Z, Tschuch C, Csiszar K, Bacchelli B, QuaglinoD, Pasquali-Ronchetti I, Pope FM, Richards A, Terry S,Bercovitch L, Paepe A de, Boyd CD (2000) Mutations in agene encoding an ABC transporter cause pseudoxanthomaelasticum. Nat Genet 25:223–227

Le Saux O, Beck K, Sachsinger C, Silvestri C, Treiber C, GöringHHH, Johnson EW, Paepe A de, Pope FM, Pasquali-RonchettiI, Bercovitch L, Terry S, Marais A-S, Viljoen DL, Boyd CD(2001) A spectrum of ABCC6 mutations is responsible forpseudoxanthoma elasticum. Am J Hum Genet 69:749–764

Lebwohl M, Schwartz E, Lemlich G, Lovelace O, Shaikh-Bahai F,Fleischmajer R (1993) Abnormalities of connective tissue com-ponents in lesional and non-lesional tissue of patients withpseudoxanthoma elasticum. Arch Dermatol Res 285:121–126

Leitersdorf E, Westhuyzen DR van der, Coetzee GA, Hobbs HH(1989) Two common low density lipoprotein receptor genemutations cause familial hypercholesterolaemia in Afrikaners.J Clin Invest 84:954–961

Meissner PN, Dailey TA, Hift RJ, Ziman M, Corrigall AV,Roberts AG, Meissner DM, Kirsch RE, Dailey HA (1996) AR59W mutation in human protoporphyrinogen oxidase resultsin decreased enzyme activity and is prevalent in South Africanswith variegate porphyria. Nat Genet 13:95–97

Meloni I, Rubegni P, De Aloe G, Bruttini M, Pianigiani E, CusanoR, Seri M, Mondillo S, Federico A, Bardelli AM, Andreassi L,Fimiani M, Renieri A (2001) Pseudoxanthoma elasticum: pointmutations in the ABCC6 gene and a large deletion includingalso ABCC1 and MYH11. Hum Mutat 18:85

Neldner KH (1988) Pseudoxanthoma elasticum. Clin Dermatol27:1–159

Nishida H, Endo M, Koyanagi H, Ichihara T, Takao A, MaruyamaM (1990) Coronary artery bypass in a 15-year-old girl withpseudoxanthoma elasticum. Ann Thorac Surg 49:483–485

Orita M, Iwahana H, Kanazawa H, Hayashi K, Sekiya T (1989)Detection of polymorphisms of human DNA by gel elec-trophoresis as single-strand conformation polymorphisms. ProcNatl Acad Sci USA 86:2766–2770

337

Page 8: Evidence for a founder effect for pseudoxanthoma elasticum in the Afrikaner population of South Africa

Pulkkinen L, Nakano A, Ringpfeil F, Uitto J (2001) Identificationof ABCC6 pseudogenes on human chromosome 16p: implica-tions for mutation detection in pseudoxanthoma elasticum.Hum Genet 109:356–365

Renie WA, Pyeritz RE, Combs J, Fine SF (1984) Pseudoxanthomaelasticum: high calcium intake in early life correlates withseverity. Am J Med Genet 19:235–244

Ringpfeil F, Lebwohl MG, Christiano AM, Uitto J (2000) Pseu-doxanthoma elasticum: mutations in the MRP6 gene encodinga transmembrane ATP-binding cassette (ABC) transporter.Proc Natl Acad Sci USA 97:6001–6006

Ringpfeil F, Pulkkinen L, Uitto J (2001) Molecular genetics ofpseudoxanthoma elasticum. Exp Dermatol 10:221–228

Steyn K, Goldberg YP, Kotze MJ, Steyn M, Swanepoel ASP,Fourie JM, Coetzee GA, Westhuyzen DR van der (1996) Esti-mation of the prevalence of familial hypercholesterolaemia in a rural Afrikaner community by direct screening for threeAfrikaner founder low density lipoprotein receptor gene muta-tions. Hum Genet 98:479–484

Struk B, Cai L, Zach S, Ji W, Chung J, Lumsden A, Stumm M,Huber M, Schaen L, Kim CA, Goldsmith LA, Viljoen D,Figuera LE, Fuchs W, Munier F, Ramesar R, Hohl D, RichardsR, Neldner KH, Lindpaintner K (2000) Mutations of the geneencoding the transmembrane transporter protein ABC-C6cause pseudoxanthoma elasticum. J Mol Med 78:282–286

Tipping AJ, Pearson T, Morgan NV, Gibson RA, Kuyt LP,Havenga C, Gluckman E, Joenje H, Ravel T de, Jansen S,Mathew CG (2001) Molecular and genealogical evidence for afounder effect in Fanconi anemia families of the Afrikaner pop-ulation of South Africa. Proc Natl Acad Sci USA 98:5734–5739

Torrington M, Viljoen DL (1991) Founder effect in 20 Afrikanerkindreds with pseudoxanthoma elasticum. S Afr Med J 79:7–11

Uitto J, Shamban A (1987) Heritable skin diseases with moleculardefects in collagen or elastin. Dermatol Clin 5:63–84

Uitto J, Boyd CD, Lebwohl MG, Moshell AN, Rosenbloom J,Terry S (1998) International Centennial Meeting on Pseudo-xanthoma Elasticum: progress in PXE research. J Invest Der-matol 110:840–842

Uitto J, Pulkkinen L, Ringpfeil F (2001) Molecular genetics ofpseudoxanthoma elasticum: a metabolic disorder at the envi-ronment-genome interface? Trends Mol Med 7:13–17

Viljoen DL (1991) Pseudoxanthoma elasticum in southern Africa.MD Thesis, University of Cape Town, South Africa

Viljoen DL, Pope FM, Beighton P (1987) Heterogeneity of pseu-doxanthoma elasticum: delineation of a new form? Clin Genet32:100–5

Weenink AC, Dijkman G, Meijer PH de (1996) Pseudoxanthomaelasticum and its complications: two case reports. Neth J Med49:24–29

Whitney MA, Saito H, Jakobs PM, Gibson RA, Moses RE,Grompe M (1993) A common mutation in the FACC genecauses Fanconi anaemia in Ashkenazi Jews. Nat Genet 4:202–205

338


Recommended