~ferences ....

IR.§ferences

References

Akashi T, Matsumura T, Taniguchi I, Hase T (1997) Mutational analysis of the redox properties of

the [2Fe-2S] cluster in plant ferredoxins. J Inorg Biochem 67: 255.

Akhtar M. (1994). The modification of acetate and propionate side chains during biosynthesis of

Heme and chlorophylls: Mechanistic and stereochemical studies. In Biosynthesis of the

tetrapyrrole pigments. D.J. Chadwick, K.Ackrill, eds, John Wiley and sons, Chichester,UK,

pp.131-152.

Akiko Maruyama-Nakashita, Eri Inoue, Akiko Watanabe-Takahashi, Tomoyuki Yamaya, and

Hideki Takahashi (2003). Transcriptome Profiling of Sulfur-Responsive Genes in

Arabidopsis Reveals Global Effects of Sulfur Nutrition on Multiple Metabolic Pathways Plant

Physiol. 132: 597-605.

Alawady AE and Grimm B. (2005) Tobacco Mg protoporphyrin IX methyltransferase is involved in

inverse activation ofMgporphyrin and proto heme synthesis. Plant J. 41: 282-290.

Alonso JM, Chamarro J, Granell A (1995) A non-photosynthetic ferredoxin gene is induced by

ethylene in Citrus organs. Plant Mol Bioi 29: 1211-1221.

Ameziane RK, Bernhard K, Bates R, Lightfoot D (2000). Expression of the bacterial gdhA gene

encoding NAD(P)H glutamate dehydogenase in tobacco affects plant growth and

development. Plant and soil, 221: 47-57.

Amir R, Hacham Y and Galili G (2002) Cystathionine gammasynthase and threonine synthase

operate in concert to regulate carbon flow towards methionine in plants. Trends Plant Sci 7:

153-156.

Amtmann, A. et al. (2006) Nutrient sensing and signalling in plants: potassium and phosphorus. Adv.

Bot. Res. 43, 209-257

Anandacoomaraswamy A, DeCosta WAJM, Tennakoon PLK, VanDerWerf A. (2002). The

physiological basis of increased biomass partitioning to roots upon nitrogen deprivation in

young clonal tea (Camellia sinensis (L.) O. Kuntz). Plant and Soil 238, 1-9.

Apel K. (1981) The protochlorophyllide holochrome of barley (Hordeum vulgare L.). Phytochrome­

induced decrease of translatable mRNA coding for the NADPH: protochlorophyllide

oxidoreductase. Eur J Biochem. 120: 89-93.

Aslam M, Travis R, Huffaker R. 1992. Comparative kinetics and reciprocal inhibition of nitrate and

nitrite uptake in roots of un induced and induced barley (Hordeum vulgare L.) seedlings. Plant

Physiology 99, 1124--1133.

171

CJ?sferences

Aslam M, Travis RL, Huffaker RC. 1993. Comparative induction of nitrate and nitrite uptake and

reduction systems by ambient nitrate and nitrite in intact roots of barley (Hordeum vulgare L.)

seedlings. Plant Physiology 102, 811-819.

Athwal GS, Pearson J, Laurie S (1997). Regulation of glutamate dehydrogenase activity by

manipulation of nucleotide supply in Daucus carota suspension culture. Physiology plant, 101:

503-509.

Aubert S, Blignyr, Douce R, Ratcliffe G, Roberts JKM (2001). Contribution of glutamate

dehhydrogenase to mitochondrial metabolism studied by I3C and 31 p nuclear magnetic

resonance. Journal of Expremental botany, 52: 37-45.

Augier V, Guigliarelli B, Asso M, Bertrand P, Froxon C, Giordano G, Chippaux M and B1asso F.

(1993) Site-directed mutagenesis of conserved cysteine residues within the p-subunit of E.coli

nitrate reductase. Physiological, biochemical and EPR characterization of the mutated

enzymes. Biochemistry 32:2013-2023

Awazuhara M, Kima H, Goto DB, Matsui A, Hayashi H. (2002) A 235-bp region from a

nutritionally regulated soybean seed-specific gene promoter can confer its sulfur and nitrogen

response to a constitutive promoter in aerial tissues of Arabidopsis thaliana.Plant Sci. 163:75-

82.

Back E, Burkhart W, Moyer M, Privalle L, Rothstein S (1988) Isolation of cDNA clones coding for

spinach nitrite reductase: complete sequence and nitrate induction. Mol Gen Genet 212: 20-26

Back E, Dunne W, Schneiderbauer A, de Framond A, Rastogi Rand Rohstein S J,

(1991 ).Isolation of Spinach nitrite reductase gene promotor which confers nitrate inducibility

on GUS gene expression in transgenic tobacco. Plant Mol. BioI. 17,9-18.

Balk J, Lobreaux S. (2005) Biogenesis of iron-sulfur proteins in plants. Trends Plant Sci. 2005

Jul; 10(7):324-31.(2002) RopGAP4-dependent Rop GTPase rheostat control of Arabidopsis

oxygen deprivation tolerance.

Bazzaz MB and Brereton RG. (1982) 4-Vinyl-4desethyl chlorophyll a: a new naturally occurring

chlorophyll. FEBS Lett. 128: 104-108.

Bazzaz MB. (1981) New chlorophyll chromophores isolate from a chlorophyll deficient mutant of

maize. Photobiochem. Photobiophys. 2: 199-207.

Beale SI and Weinstein JD. (1990) Tetrapyrrole metabolism III photosynthetic organisms. In

Biosynthesis of heme and chlorophyll. H.A.Dailey eds, McGraw-Hill, New York, pp. 287-

291.

172

~ferences

Behl R, Tischner R, Raschke K. 1988. Induction of a high-capacity nitrate uptake mechanism in

barley roots prompted by nitrate uptake through a constitutive low-capacity mechanism.

Planta 176, 235-240.

Beinert H, Holm RH and Munck E (1997) Iron-sulfur clusters: nature's modular, multipurpose

struc.tures. Science 277: 653-659.

Beinert, H. (2000) Iron-sulfur proteins: ancient structures, still full of surprises. J. BioI. Inorg. Chern.

5,2-15.

Benz J and Riidiger W. (1981) Chlorophyll biosynthesis: various chlorophyllides as exogenous

substrates for chlorophyll synthetase. Z NatUlforsch. 36c: 51-57.

Berthold DA and Stenmark P (2003) Membrane-bound diiron carboxylate proteins. Annu Rev Plant

BioI 54: 497-517.

Bick JA, Aslund F, Chen Y, Leustek T (1998) Glutaredoxin function for the carboxyl terminal

domain of the plant-type 5'-adenylylsulfate (APS) reductase. Proc Nat! Acad Sci USA 95:

8404-8409.

Bilger HW, Schreiber U, Lange OL (1984) Determination of leaf heat resistance: comparative

investigation of chlorophyll fluorescence changes and tissue necrosis methods. Oecologia 63:

256-262.

Bilger W, Schreiber U, Lange OL (1987) Chlorophyll fluorescence as an indicator of heat induced

limitation of photosynthesis in Arbutus unedo L. In JD Tenhunen, FM Catarino, OL Lange,

eds, Plant Responses to Stress. Springer, Berlin, pp 391-399.

Blake-KalffMMA,Harrison KR, Hawkesford MJ, Zhao FJ, McGrath SP. (1998) Distribution of

sulfur within oilseed rape leaves in response to sulfur deficiency during vegetative growth.

Plant Physiol. 118:1337-44.

Blasing, O.E. et at. (2005) Sugars and circadian regulation make major contributions to the global

regulation of dim:nal gene expression in Arabidopsis. Plant Cell 17, 3257-3281.

Block MA, Tewari AK, Albrieux C, Marechal E and Joyard J. (2002) The plant S-adenosyl-L­

methionine: Mg-protoporphyrin IX methyl transferase is isolated in both envelope and

thylakoid chloroplast membranes. Eur J Biochem. 269: 240-248.

Boese QF, Spano AJ, Li JM and Timko MP. (1991) Aminolevulinic acid dehydratase in pea (Pisum

sativum L.) Identification of an unusual metal binding in the plant enzyme. J Bioi Chem.

266: 17060-17066.

Bollivar DW and Beale SI. (1996) The chlorophyll biosynthetic enzyme Mg-protoporphyrin IX

mono methyl ester (oxidative) cyclase. Plant Physiol. 112: 105-114.

173

rRgfcrences

Bollivar DW, Suzuki JY, Beatty JT, Dobrowolski JM and Bauer CEo (1994) Directed mutational

analysis of bacterio-chlorophyll a biosynthesis in Rhodobacter capsulatus. J Mol Bioi. 237:

622-640.

Bork C, Schwenn JD, Hell R. (1998) Isolation and characterization of a gene for assimilatory sulfite

reductase from Arabidopsis thaliana. Gene. 28;212(1):147-53.

-t.

Bowsher CG, Lacey AE, Hanke GT, Clarkson DT, Saker LR, Stulen I, Emes MJ. 2007. The effect

of G1c6P uptake and its subsequent oxidation within pea root plastids on nitrite reduction and

glutamate synthesis. Journal of Experimental Botany 58, 1109-1118.

Bradford MM. (1976) A rapid and sensitive method for the quantification of microgram quantities of

protein utilizing the principle of protein-dye binding. Anal. Biochem. 72: 248-254.

Brindley AA, et al. (2003) A story of chelatase evolution: identification and characterization of a small

13-15-

Buchanan BB, Gruissem Wand Jones RL. (2004) Biochemistry and molecular biology of plants.

Chapter amino acid metabolism.

Buchner P, Takahashi H, Hawkesford MJ. (2004) Plant sulphate transporters: co-ordination of

uptake, intracellular and long-distance transport. J Exp Bot.55(404): 1765-73. Epub 2004 Jul

16.

Bukhov NG, Sabat SC, Mohanty P (1990) Analysis of chlorophyll a fluorescence hanges in weak

light in heat-treated Amaranthus chloroplasts. Photosynth Res 23: 81-87.

Camadro JM, Chamba H, Jolles J and Labbe P. (1986) Purification and properties of

coproporphyrinogen oxidase from the yeast (Saccharomyces cerevisiae). Eur J Biochem. 156:

579-587.

Campbell, W.H., and Smarelli, J. (I 986). Nitrate reductase: Biochemistry and regulation. In

Biochemical Basis of Plant Breeding, Vol. 2, c.A. Neyra, ed (Boca Raton, FL: CRC Press),

pp.I-39.

Cao J, Govindjee (1990) Chlorophyll a fluorescence transient as an indicator of active and inactive

Photosystem II in thylakoid membranes. Biochim Biophys Acta 1015: 180-188

Castelfranco P A, Thayer SS, Wilkinson JQ and Bonner BA. (1988) Labeling of porphobilinogen

deaminase by radioactive 5-aminolevulinic acid in isolated developing pea chloroplasts. Arch

Biochem Biophys. 266: 219-226.

Celine Diaz, Vera Saliba-Colombani, Olivier Loudet, Pierre Belluomo, Laurence Moreau,

Fran~oise Daniel-Vedele, Jean-Fran~ois Morot-Gaudry and Celine Masclaux-Daubresse

(2006). Leaf Yellowing and Anthocyanin Accumulation are Two enetically Independent

174

IRsferences

Strategies in Response to Nitrogen Limitation in Arabidopsis thaliana. Plant Cell Physiol.

47(1): 74-83.

Cerezo M, Tillard P, Filleur S, Mun- os S, Daniel-Vedele F, Gojon A (2001) Major alterations of

the regulation of root N030

2 uptake are associated with the mutation ofNRT2.1 and NRT2.2

genes in Arabidopsis. Plant Physiol 127: 262-271.

Chichkova, S., Arellano, J., Vance, C. P. and Hernandej, G. (2001), Transgenic tobacco plants that

overexpress alfalfa NADHglutamate synthase have higher carbon and nitrogen content. J.Exp.

Bot. 52, 2079-2087.

Chisholm, S.W., Frankel, S.L., Goericke, R., Olson, R.J., Palenik, B., Waterbury, J.B., West­

Johnsrud, L., and Zettler, E.R. (1992). Prochlorococcus marinus nov. gen. nov. sp.: A

marine prokaryote containing diviny1chlorophyll a and b. Arch. Microbiol. 157,297-300

Clarkson DT (1985) Factors affecting mineral nutrient acquisition by plants. Annu Rev Plant Physiol

36: 77-115.

Clausen T, Wahl MC, Messerschmidt A, Huber R, Furhmann JC, Laber B, Streber Wand

Steegborn C (1999) Cloning, purification and characterization of cystathionine

gammasynthase from Nicotiana tabaccum. BioI Chem-380: 1237-1242.

Clough SJ and Bent AF. (1998) Floral dip: a simplified method for Agrobacterium mediated

transformation of Arabidopsis thaliana. Plant J. 6: 735-743.

Cornah JE, Roper JM, Pal Singh D and Smith AG. (2002) Measurement of ferrochelatase activity

using a novel assay suggests that plastids are the major site of haem biosynthesis in both

photosynthetic and non-photosynthetic cells of pea (Pisum sativum L.). Biochem J. 362: 423-

32.

Cornah JE, Terry MJ, Smith AG. (2003) Green or red: what stops the traffic in the tetrapyrrole

pathway? Trends Plant Sci. May;8(5):224-30.

Coruzzi, G. and Bush, D.R. (2001) Nitrogen and carbon nutrient and metabolite signalling in plants.

Plant Physiol. 125,61-64.

Coschigano, K.T. et aI. (1998) Arabidopsis gls mutants and distinct Fd-GOGAT genes: implications

for photorespiration and primary nitrogen assimilation. Plant Cell 10, 741-752.

Crane BR, Arvai AS, Gachhui R, Wu C, Ghosh DK, Getzoff ED, Stuehr DJ, Tainer JA. (1997)

Structures of the siroheme- and Fe4S4-containing active center of sulfite reductase in different

states of oxidation: heme activation via reduction-gated exogenous ligand exchange. Biochem;

36:12101-19.

175

~ferences

Crane BR, Getzoff ED. (1996) The relationship between structure and function for the sulfite

reductases. Curr Opin Struct BioI. Dec; 6(6):744-56.

Crane BR, Siegel LM, Getzoff ED. (1995) Sulfite reductase structure at 1.6 A: evolution and catalysis

for reduction of inorganic anions. Science. Oct 6; 270 (5233):59-67.

Crawford NM (1995) Nitrate: nutrient and signal for plant growth. Plant Cell 7: 859-868.

Crawford NM, Glass ADM (1998) Molecular and physiological aspects of nitrate uptake in plants.

Trends Plant Sci 3: 389-395.

Crete P, Caboche M, Meyer c.( 1997) Nitrite reductase expression is regulated at the post­

transcriptional level by the nitrogen source in Nicotiana plumbaginifolia and Arabidopsis

thaliana. PlantJ. Apr; 1 1(4):625-34.

Daniel PC, Shine man M, Fischetti M. 2001. Comparison of chemosensory activation of antennular

grooming behaviour in five species of decapods. Marine and Freshwater Research 52, 1333-

1337.

Daniel Y. Little, Rongyu Rao, Sabrina Oliva, Franc,oise Daniel-Vedele, Anne Krapp, and

Jocelyn E. Malamy (2005) The putative high-affinity nitrate transporter NRT2.1 represses

lateral root initiation in response to nutritional cues. PNAS September 20, vol. 102 no. 38

13693-13698.

Davies JP, Yildiz FR, Grossman AR. (1999) Sac3, an snfI-like serine/threonine kinase that positively

and negatively regulates the responses of Chlamydomonas to sulfur limitation. Plant Cell

11:1179-90.

De Block M, De Brouwer D, Tenning P.(1989) Transformation of Brassica napus and Brassica

oleracea Using Agrobacterium tumefaciens and the Expression of the bar and neo Genes in

the Transgenic Plants. Plant Physiol. 91 (2):694-70 1.

der Leij M, Smith SJ, Miller AJ. (1998) Remobilization of vacuolar stored nitrate in barley root cells.

Planta 205, 64-72.

Djannane, S., Chauvin, J. E. and Meyer, C. (2002) Glasshouse behaviour of eight transgenic potato

clones with a modified nitrate reductase expression under two fertilization regimes. J. Exp.

Bot.53; 1037-1045.

Domanskii V, Rassadina V, Gus-Mayer S, Wanner G, Schoch S and Rudiger W. (2003)

Characterization of two phases of chlorophyll formation during greening of etiolated barley

leaves. Planta. 216: 475-83.

176

~ferences

Dose MM, Hirasawa 1\1, Kleis-SanFrancisco S, Lew EL, Knaff DB.( 1997 ). The ferredoxin-binding

site of ferredoxin:nitrite oxidoreductase. Differential chemical modification of the free

enzyme and its complex with ferredoxin. Plant Physiol. 114: 1047-1053.

Douzery EJ, Snell EA, Bapteste E, Delsuc F, Philippe H (2004). The timing of eukaryotic evolution:

does a relaxed molecular clock reconcile proteins and fossils. Proc Nat! Acad Sci USA. 2004

Oct 26;101(43):15386-91.

Droux M (2004) Sulfur assimilation and the role of sulfur in plant metabolism: A Survey. Photosyn

Res 79: 331-348.

Dubois F, Terce-Laforgue T, Gonzalez-Moro MB, Estavillo JM, Sangwan R, Gallis A, Hirel B

(2003).Glutamate dehydrogenase in plants : Is there a new story for an old enzyme ? Plant

Physiol. Biochem., 41 :565-576.

Ducruet JM, Lemoine Y (1985) Increased heat sensitivity of the photosynthetic apparatus in triazine­

resistant biotypes from different plant species. Plant Cell Physiol 26: 419-429

Eckermann C, Eichel J and Schro·· der J (2000) Plant methionine synthase: new insights into

properties and expression. Bioi Chern 381: 695-703.

Eggink LL, LoBrutto R, Brune DC, Brusslan J, Yamasato A, Tanaka A and Hoober JK. (2004)

Synthesis of chlorophyll b: localization of chlorophyll ide a oxygenase and discovery of a

stable radical in the catalytic subunit. BMC Plant Bioi. 4: 5.

Eilers T, Schwarz G, Brinkmann H, Witt C, Richter T, Nieder J, Koch B, Hillem R, Hansch R,

Mendel RR. (2001) Identification and biochemical characterization of Arabidopsis thaliana

sulfite oxidase: a new member in plant sulfur metabolism. J Bioi Chern 276: 46989-46994.

Espineda CE, Linford AS, Devine D and Brusslan JA. (1999) The AtCAO gene, encoding

chlorophyll a oxygenase, is required for chlorophyll b synthesis in Arabidopsis thaliana. Proc

Nat! Acad Sci USA. 96: 10507-11.

Faure JD, Meyer C, Caboche M. (2001). Nitrate assimilation: nitrate and nitrite reductases. In:

Morot-Gaudry JF, ed. Nitrogen assimilation by plants. Enfield: Science Publishers Inc., 33-

52.

Fei H, Chaillou S, Hirel B, Polowick P, Mahon JD, Vessey JK. (2006) Effects of the overexpression

of a soybean cytosolic glutamine synthetase gene (GSI5) linked to organ-specific promoters

on growth and nitrogen accumulation of pea plants supplied with ammonium. Plant Physiol

Biochem. 44( 1 0):543-50.

Fei, H., Chaillou, S., Mahon, J. D. and Vessey, J. K. (2003), Overexpression of a soyabean cytosolic

glutamine synthetase gene linked to organ-specific promoters in pea plants grown in different

concentrations of nitrate. Planta, 216, 467-474.

177

~fere/1.ces

Felix F and Brouillet N. (1990) Purification and properties of uroporphyrinogen decarboxylase from

Saccharomyces cerevisae. Eur J Biochem. 188: 393-403.

Ferrario-Me'ry S, Valadier M-H, Godefroy N, Miallier D, Hodges M, Hirel B, Foyer CH, Suzuki

A. 2002b. Diurnal changes in ammonia assimilation in transformed tobacco plants expressing

ferredoxin-dependent glutamate synthase mRNA in the antisense orientation. Plant Science

163,59--67.

Ferrario-Mery, S., Valadier, M. H. and Foyer, C. (1998) Overexpression of nitrate reductase in

tobacco delays drought-induced decreases in nitrate reductase activity and mRNA. Plant

Physiol.117,293-302.

Fey V, et al. 2005 Retrograde plastid redox signals in the expression of nuclear genes for chloroplast

proteins of Arabidopsis thaliana. J Bioi Chern; 280:5318- 28.

Filleur S, Dorbe MF, Cerezo M, Orsel M, Granier F, Gojon A, Daniel- Vedele F (2001) An

Arabidopsis T-DNA mutant affected in NRT2 genes is impaired in nitrate uptake. FEBS Lett

489: 220-224.

Fischer K, Barbier GG, Hecht HJ, Mendel RR, Campbell WH, Schwarz G. 2005. Structural basis

of eukaryotic nitrate reduction: crystal structures of the nitrate reductase active site. The Plant

Cell 17, 1167-1179.

Fontaine J-X, Saladino F, Agrimonti C, Bedu M, Terce-Laforgue T, Tetu T, Hirel B, Restivo FM,

Dubois F. (2006) Control of the synthesis and subcellular targeting of the two GDH gene

products in leaves and stems of Nicotiana plumbaginifolia and Arabidopsis thaliana. Plant

and Cell Physiol. 47:410--418

Forde BG (2000) Nitrate transporters in plants: structure, function and regulation. Biochim Biophys

Acta 1465: 219-235.

Forde BG, Clarkson DT. 1999. Nitrate and ammonium nutrition of plants: physiological and

molecular perspectives. Advances in Botanical Research 30, 1-90.

Frazzon, J. and Dean, D.R. (2003) Formation of iron-sulfur clusters in bacteria - an emerging field in

bioinorganic chemistry. Curro Opin. Chern. BioI. 7, 166-173.

Freist W, Gauss DH, Ibba M and Soli D. (1997) Glutaminyl-tRNA synthetase. Bioi Chem. 378:

1103-1117.

Friso G, Giacomelli L, Ytterberg AJ, Peltier J-B, Rudella A, Sun Q and Wijk KJ (2004) In-depth

analysis of the thylakoid membrane proteome of Arabidopsis thaliana chloroplasts: new

proteins, new functions, and a plastid proteome database. Plant Cell 16: 478--499.

178

~ferences

Fuentes, S. I., Allen, D. J., Ortiz-Lopez, A. and Hernandez, G. (2001) Over-expression of cytosolic

glutamine synthetase increases photosynthesis and growth at low nitrogen concentrations. 1.

Exp.Bot., 52, 1071-1081.

Gamborg OL, Miller RA and Ojima K. (1968) Nutrient requirments of suspension culture of

soybean root cells. Expt. Cell Res. 50: 151-158.

Gansel X, Mun- os S, Tillard P, Gojon A (2001) Differential regulation of the N03-2 and NH/1

transporter genes AtNRT2.1 and AtAMT1.1 in Arabidopsis: relation with long-distance and

local controls by N status of the plant. Plant J 26: 143-155.

Gartland KM, McHugh AT, Vitha S, Benes K, Irvine RJ, Gartland JS. (2000) Analysis of

genetically modified plant gene expression using GUS fluorimetry Mol Biotechnol.

14(3):235-9.

Genty B, Briantais JM and Baker, NR (1989) The relationship between quantum yield of

photosynthetic electron transport and quenching of chlorophyll fluorescence. Biochim.

Biophys. Acta 990: 87-92.

Gibson KD, Neuberger A and Tait GH. (1963) Studies on the biosynthesis of porphyrin and

bacteriochlorophyll by Rhodopseudomonas spheriodes. 4. S-adenosylmethionine-magnesium

protoporphyrin methyltransferase. Biochem 1. 88: 325-334.

Gilbert SM, Clarkson DT, Cambridge M, Lambers H, Hawkesford MJ. (1997) Sulfatedeprivation

has an early effect on the content of ribulose 1,5-bisphosphate carboxylase oxygenase and

photosynthesis in young leaves of wheat. Plant Physiol. 115:1231-39.

Glass AD, Britto DT, Kaiser BN, Kinghorn JR, Kronzucker HJ, Kumar A, Okamoto M, Rawat

S, Siddiqi MY, Unkles SE, Vidmar JJ. (2002) The regulation of nitrate and ammonium

transport systems in plants. J Exp Bot. 53(370):855-64.

Glass ADM, Siddiqi MY. 1995. Nitrogen absorption by plant roots. In: Srivastava HS, Singh RP, eds.

Nitrogen nutrition in higher plants. New Delhi: Associated Publishing Company, 21-56.

Glass, A.D., Shaff, J.E. and Kochian, L.V. (1992) Studies of the uptake of nitrate in barley, IV.

Electrophysiology, Plant Physiol. 99,456-463.

Goslings D, Meskauskiene R, Kim C, Lee KP, Nater M and Apel K. (2004) Concurrent

interactions of heme and FLU with Glu tRNA reductase (HEMAl), the target of metabolic

feedback inhibition of tetrapyrrole biosynthesis, in dark- and light-grown Arabidopsis plants.

Plant 1. 40: 957-67.

Gough SP, Kannangara CG and von Wettestein D. (1992) Glutamate 1-semialdehyde

aminotransferase as a target for herbicides. In "Target assays for modem herbicidesand related

179

rJ?,fjerences

phytotoxic compounds". (P. Boger and G. Sandmann, eds). pp. 21-27. Lewis publishers,

Chelesa.

Govindjee (1995) Sixty-three years since Kautsky: chlorophyll a fluorescence. Aust J Plant Physiol22:

131-160.

Govindjee (200~) Chlorophyll a fluoroscence: a bit of basic and history. In GC Papageorgiou,

Govindjee, eds, Chlorophyll a Fluoroscence: A Signature of Photosynthesis, Advances in

Photosynthesis and Respiration, Vol 19. Springer, Dordrecht, The Netherlands, pp 1-42.

Grafe S, Saluz HP, Grimm B and Hanel F. (1999) Mg-chelatase of tobacco: the role of the subunit

CHL D in the chelation step of protoporphyrin IX. Proc Natl Acad Sci USA. 96: 1941-1946.

Granvogl M, Wieser H, Koehler P, Tucher SV, Schieberle P (2007) Influence of sulfur fertilization

on the amounts of free amino acids in wheat. correlation with baking properties as well as

with 3-aminopropionamide and acrylamide generation during baking. J Agric Food Chem 55:

4271-4277.

Green LS, Yee BC, Buchanan BB, Kamide K, Sanada Y, Wada K (1991) Ferredoxin and

ferredoxin-NADP reductase from photosynthetic and nonphotosynthetic tissues of tomato.

Plant Physiol96: 1207-1213.

Grimble RF (1994) Sulphur amino acids and the metabolic response to cytokines. Adv Exp Med Bioi

359: 41- 49.

Grimm B, Smith AJ, Kannangara CG and Smith M. (1991) Gabaculine-resistant glutamate 1-

semialdehyde aminotransferase of Synechococcus. Deletion of a tripeptide close to the NH2

terminus and internal amino acid substitution. J Bioi Chem. 266: 12495-12501.

Grossman, A.R., Bhaya, D., Apt, K.E. and Kehoe, D.M. (1995) Light-harvesting complexes III

oxygenic photosynthesis: diversity, control, and evolution. Annu. Rev. Genet. 29: 231-288.

Gyaneshwar P, Paliy 0, McAuliffe J, Jones A, Jordan M, Kustu S. (2005) Lesson from Escherichia

coli genes similarly regulated in response to nitrogen and sulfur limitation. Proc. Nat!. Acad.

Sci. USA 102:3453-58.

Hageman, R.H. (1 979). Nitrogen Assimilation of Plants. (London: Academic Press, Inc.).

Hammond, J.P. et al. (2004) Genetic responses to phosphorus deficiency. Ann. Bot. (Lond.) 94, 323-

332.

Hanahan D. (1983) Studies on transformation of E.coli with plasmid. 1.Mol.Bio. 166: 557-580.

Hansson M, Rutberg L, Schroder I and Hederstedt L. (1991) The Bacillus subtilis hemAXCDBL

gene cluster, which encodes enzymes of the biosynthetic pathway from glutamate to

uroporphyrinogen III. 1. Bacterio!' 173: 2590-2599.

180

cx§ferences

Hara-Yokoyama M, Yokoyama Sand Miyazawa T. (1986) Conformation change of tRNAGlu in

the complex with glutamyl-tRNA synthetase is required for the specific binding of L­

glutamate. Biochemistry. 25: 7031-7036.

Harmer SL, Hogenesch JB, Straume M, Chang H-S, Han B, Zhu T, Wang X, Kreps JA and Kay

SA. (2000) Orchestrated transcription of key pathways in Arabidopsis by the circadian clock.

Science. 290: 2110-2113.

Hart GJ and Battersby AR. (1985) Purification and properties of uroporphyrinogen III synthase( co­

synthase) from Euglena gracilis. Biochem J. 232: 151-160.

Hase T, Kimata Y, Yonekura K, Matsumura T, Sakakibara H (199Ia) Molecular cloning and

differential expression of the maize ferredoxin gene family. Plant Physiol96: 77-83

Hatzfeld Y, Lee S, Lee M, Leustek T, Saito K (2000) Functional characterization of a gene encoding

a fourth ATP sulfurylase isoform from Arabidopsis thaliana. Gene 248: 51-58.

Hausler, R. E., Peter, J. L. and Richard, C. L. (1994), Control of photosynthesis in barley leaves

with reduced activities of glutamine synthetase or glutamate synthase II. Control of electron

transport and C02 assimilation. Planta, 194,418--435.

Havaux M (1993) Rapid photosynthetic adaptation to heat stress triggered III potato leaves by

moderately elevated temperatures. Plant Cell Environ 16: 461--467.

Havaux M, Lutz C and Grimm B. (2003) Chloroplast membrane photostability in chiP transgenic

tobacco plants deficient in tocopherols. Plant Physiol. 132: 300-310.

Hawkesford, M. J. and de Kok, L. J. (2006) Managing sulphur .metabolism in plants. Plant Cell

Environ., 2006, 29, 382-395.

Heiber I, Stroher E, Raatz B, Busse I, Kahmann U, Bevan MW, Dietz KJ, Baier M. (2007) The

redox imbalanced mutants of Arabidopsis differentiate signaling pathways for redox

regulation of chloroplast antioxidant enzymes. Plant Physiol. 143(4): 1774-88.

Hein P, Oelmiiller R. (2007). Photosystem I and regulatory proteins for its biogenesis. Funct Plant

Sci Biotech; 1:1 06-1l.

Helfrich M, Schoch S, Lempert U, Crniel E and Rudiger W. (1994) Chlorophyll synthetase cannot

synthesize chlorophyll a'. Eur J Biochem. 219: 267-275.

Hell R, Jost R, Berkowitz 0, Wirtz M. (2002) Molecular and biochemical analysis of the enzymes of

cysteine biosynthesis in the plant Arabidopsis thaliana. Amino Acids 22: 245-257.

Hermans C, Hammond JP, White PJ, Verbruggen N. (2006) How do plants respond to nutrient

shortage by biomass allocation? Trends Plant Sci. 2006 Dec; 11 (12):61 0-7. Epub 2006 Nov 7.

181

CRsfcrcnccs

Hesse H, Kreft 0, Maimann S, Zeh M and Hoefgen R (2004) Current understanding of the

regulation of methionine biosynthesis in plants. J Exp Bot 55: 1799-1808.

Heyes DJ and Hunter eN. (2004) Identification and characterization of the product release steps

within the catalytic cycle of protochlorophyllide oxidoreductase. Biochemist/y. 43: 8265-

8271

Heyes DJ, Ruban AV and Hunter eN. (2003) Protochlorophyllide oxidoreductase: spectroscopic

characterization of the 'dark' reactions. Biochemistry. 42: 523-528.

Heyes DJ, Ruban A V, Wilks HM and Hunter eN. (2002) Enzymology below 200 K: the kinetics

and thermodynamics of the photochemistry catalyzed by protochlorophyllide oxidoreductase.

Proc. Nat!. Acad. Sci. USA. 99: 11145-11150.

Higuchi M and Bogorad L. (1975) The purification and properties of uroporphyrinogen I synthase

and uroporphyrinogen III co synthase. Interactions between the Enzymes. Ann N. Y. Acad Sci.

244: 401-418.

Hirai MY, Fujiwara T, Awazuhara M, Kimura T, Noji M, Saito K (2003) Global expression

profiling of sulfur-starved Arabidopsis by DNA macro array reveals the role of O-acetyl-l­

serine as a general regulator of gene expression in response to sulfur nutrition. Plant J 33:

651-663.

Hirai MY, Saito K. (2004) Post-genomics approaches for the elucidation of plant adaptive

mechanisms to sulphur deficiency. J. Exp. Bot. 55:1871-79.

Hirai MY, Yano M, Goodenowe DB, Kanaya S, Kimura T, et al.( 2004) Integration of

transcriptomics and metabolomics for understanding of global responses to nutritional stresses

in Arabidopsis thaliana. Proc. Natl. Acad. Sci. USA 10 1: 1 0205-1 O.

Hirel B, Le Gouis J, Ney B, Gallais A (2007). The challenge of improving nitrogen use efficiency in

crop plants: Towards a more central role for genetic variability and quantitative genetics

within integrated approaches. 1. Exp. Botany., 58: 2369-2387.

Hirel B, Miao GH, Verma DPS (1993) Metabolic and develop- mental control of glutamine

synthetase genes in legume and non-legume plants. In: Verma DPS (ed) Control of plant gene

xpression. CRC Press, Boca Raton, pp 443-458.

Horgen R, Kreft 0, Willmitzer L, Hesse H. (2001) Manipulation of thiol contents in plants. Amino

Acids; 20:291-9.

Hoober JK, Kahn A, Ash DE, Gough SP and Kannagara eG. (1988) Biosynthesis of 5-

aminolevulinate in greening barley leaves.IX. Structure of the substrate, mode of gabaculine

inhibition, and the catalytic mechanism of Glutamate-l-semialdehyde aminotransferase.

Carlsberg Res Com 53:11-25.

182

(}!,§ferences

Horlow E and Lane D. (1988) In: Antibodies: A Laboratory Manual (Cold Spring Harbour

Laboratory).

Hoshida H, Tanaka Y, Hibino T, Hayashi Y, Tanaka A, Takabe T, Takabe T. (2000) Enhanced

tolerance to salt stress in transgenic rice that overexpresses chloroplast glutamine synthetase.

Plant Mol BioI. 2000 May; 43(1): I 03-11.

Hsu WP and Miller GW. (1970) Coproporphyrinogenase in tobacco (Nicotiana tabacum L.). Biochem

J.117:215-220.

Huang DD, Wang WY, Gough SP and Kannangara CG. (1984) Delta-Aminolevulinic acid­

synthesizing enzymes need an RNAmoiety for activity. Science. 225: 1482-1484.

Huber, J.L., Huber, S.C., Campbell, W.H., and Redinbaugh, M.G. (1992). Reversible Jightldark

modulation of spinach leaf nitrate reductase activity involves protein phosphorylation. Arch.

Biochem. Biophys. 296, 58-65.

Hukmani P and Tripathy BC. (1992) Spectrofluorometric estimation of intermediates of chlorophyll

biosynthesis: Protoporphyrin IX, Mg- Protoporphyrin, and Protochlorophyllide. Anal

Biochem. 206: 125-130.

Hunter EA, Grimble RF (1997) Dietary sulphur amino acid adequacy influences glutathione

synthesis and glutathionedependent enzymes during the inflammatory response to endotoxin

and tumour necrosis factor-alpha in rats. CUn Sci (Lond) 92: 297-305.

Imsande J (1999) Iron-sulfur clusters: Formation, perturbation, and physiological functions. Plant

Physiol Biochem 37: 87-97.

Inze D, van Montagu M. (1995) Oxidative stress in plants. CUIT Opin Biotechnol; 6:153-8.

Irihimovitch V, Stern DB. (2006) The sulfur acclimation SAC3 kinase is required for chloroplast

transcriptional repression under sulfur limitation in Chlamydomonas reinhardtii. Proc. Nat!.

Acad. Sci. USA 103:7911-16.

Ito H, Yokono M, Tanaka R, Tanaka A. (2008) Identification of a novel vinyl reductase gene

essential for the biosynthesis of mono vinyl chlorophyll in Synechocystis sp. PCC6803. J BioI

Chern. 283(14):9002-11.

Jacobs NJ and Jacobs JM. (1979) Microbial oxidation of protoporphyrinogen: an intermediate in

heme and chlorophyll biosynthesis. Arch Biochem Biophys. 197: 396-403.

Jahn D. (1992) Complex formation between glutamyl-tRNA synthetase and glutamyl-tRNA reductase

during the tRNA-dependent synthesis of 5-aminolevulinic acid in Chlamydomonas reinhardtii.

FEBSLett. 314: 77-80.

183

rR.!ferences

Jarvis SC, Macduff JH. (1989). Nitrate nutrition of grasses from steady-state supplies in flowing

solution culture following nitrate deprivation and/or defoliation. I. Recovery of uptake and

growth and their interactions. Journal of Experimental Botany 40,965-975.

Jefferson RA. (1987) Assaying chimeric genes in plants: the GUS fusion system. Plant Mol. Bioi. Rep.

5: 387-405.

Jeong J, Guerinot ML. (2009) Horning in on iron homeostasis in plants. Trends Plant Sci; 14:280-5.

Vinella D, et al. Iron-sulfur (Fe/S) protein biogenesis: phylogenomic and genetic studies of A­

type carriers. PLoS Genet 2009; 1000497.

Jesus Rexach, Emilio Fernandez, and Aurora Galvan (2000) The Chlamydomonas reinhardtii Narl

Gene Encodes a Chloroplast Membrane Protein Involved in Nitrite Transport. Plant Cell, Vol.

12, 1441-1454.

Jones DT. (1999) GenTHREADER: an efficient and reliable protein fold recognition method for

genomic sequences. J. Mol. Bioi. 287: 797-815.

Jones RM and Jordan PM. (1993) Purification and properties of the uroporphyrinogen decarboxylase

from Rhodobacter sphaeroides. Biochem J. 293: 703-712.

Jones RM and Jordan PM. (1994) Purification and properties of porphobilinogen deaminase from

Arabidopsis thaliana. Biochem J. 299: 895-902.

Jones-RhoadesMW,Bartel DP.(2004) Computational identification of plant microRNAs and their

targets, including a stress-induced miRNA. Mol. Cell 14:787-99.

Jordan PM and Shemin D. (1980) Mechanism of action of 5-aminolevulinic acid dehydratase:

Stepwise order of addition of the two molecules of 5-aminilevulinic acid in the enzymatic

synthesis of porphobilinogen. J. Chem. Soc. Chem. Comm. 240-242.

Jost R, Altschmied L, Bloem E, Bogs J, Gershenzon J, et al. (2005) Expression profiling of

metabolic genes in response to methyl jasmonate reveals regulation of genes of primary and

secondary sulfur-related pathways in Arabidopsis thaliana. Photosynthesis Res. 86:491- 508.

Jukant AA, Seubert A, Seubert Sand Ippen H. (1989) Studies on uroporphyrinogen decarboxylase

from Rhodobacter sphaeroides. Biochem J. 179: 423-428.

Kagan RM and Clarke S. (1994) Widespread occurrence of three sequence motifs in diverse S­

adenosylmethionine-dependent methyltransferases suggests a common structure for these

enzymes. Arch Biochem Biophys. 310: 417-427.

Kaiser J J, And Lewis O.A.M. (1984) Nitrate reductase and glutamine synthetase activity in leaves

and roots of nitrate-fed Helianthus Annus L. Plant and soil. 70: 127-130.

184

CR.§ferences

Kaiser WM, Huber Sc. 2001. Post-translational regulation of nitrate reductase: mechanism,

physiological relevance and environmental triggers. Journal of Experimental Botany 52, 1981-

1989.

Kaiser WM, Spill D. (1991) Rapid Modulation of Spinach Leaf Nitrate Reductase by Photosynthesis:

II. In Vitro Modulation by ATP and AMP. Plant Physiol. 96(2):368-375.

Kaiser, W.M., and Brendle-Behnisch, E. (1991). Rapid modulation of spinach leaf nitrate reductase

activity by photosynthesis I. Modulation in vivo by COn availability. Plant Physiol. 96, 363-

367.

Kaiser, W.M., and Huber, S.c. (1994b). Posttranslational regulation of nitrate reductase in higher

plants. PlantPhysiol. 106,817-821.

Kaiser, W.M., Weiner, H., and Huber, S.c. (1999) Nitrate reductase in higher plants: A case study

for transduction of environmental stimuli into control of catalytic activity. Physiologia

Plantarum 105: 385-390.

Kang YW, Lee JY, Jeon Y, Cheong GW, Kim M, Pai HS.( 2010). In vivo effects ofNbSiR silencing

on chloroplast development in Nicotiana benthamiana. Plant Mol BioI. Jan 3. [Epub ahead of

print].

Kannagara CG, Gough SP, Bruyant P, Hoober JK, Kahn A and Wettestein DV. (1988) tRNAglu as

a cofactor on o-arninolevulinate biosynthesis: Steps that regulatechlorophyll synthesis. Trends

BioI Sci 13: 139-143.

Kannangara CG, Andersen RV, Pontoppidan B, Willows R and von Wettstein D. (1994) Enzymic

and mechanistic studies on the conversion of glutamate to 5-arninolaevulinate. Ciba Found

Symp. 180: 3-20.

Kannangara CG, Gough SP, Oliver RP and Rasmussen SK. (1984) Biosynthesis of 5-ALA in

greening barley leaves. VI. Activation of glutamate by ligation to RNA. Carlsberg Res. Com.

49: 417-437.

Kawashima CG, Berkowitz 0, Hell R, Noji M, Saito K. (2005) Characterization and expression

analysis of a serine acetyltransferase gene family involved in a key step of the sulfur

assimilation pathway in Arabidopsis. Plant Physio1.l37(1):220-30.

Keiko Yonekura-Sakakibara, Yayoi Onda, Toshihiko Ashikari, Yoshikazu Tanaka, Takaaki

Kusumi, and Toshiharu Hase.(2000) Analysis of Reductant Supply Systems for Ferredoxin­

Dependent Sulfite Reductase in Photosynthetic and Nonphotosynthetic Organs of Maize. Plant

Physiol, March 2000, Vol. 122, pp. 887-894.

185

~ferences

Keller Y, Bouvier F, D'Harlingue A and Camara B. (1998) Metabolic compartmentation of plastid

prenyllipid biosynthesis. Evidence for the involvement of a multifunctional geranylgeranyl

reductase. Eur J Biochem. 251: 413-417.

Kimata Y, Hase T (1989) Localization offerredoxin isoproteins in mesophyll and bundle sheath cells

in maize leaf. Plant Physiol89: 1193-1197.

Kisaka H, Kida T, Miwa T (2007) Transgenic tomato plants that overexpress a gene for NADH­

dependent glutamate dehydrogenase (legdhl). Breed. Sci., 57:101-106.

Knop M, Pacyna S, Voloshchuk N, Kant S, Mullenborn C, Steiner U, Kirchmair M, Scherer HW,

Schulz M (2007) Zea mays: benzoxazolinone detoxification under sulfur deficiency

conditions - a complex allelopathic alliance including endophytic Fusarium verticillioides. J

Chem Eco133: 225-237.

Koch, K.E. (2004) Sucrose metabolism: regulatory mechanisms and pivotal roles in sugar sensing and

plant development. Curr. Opin. Plant BioI. 7,235-246.

Koch, K.E. (2004) Sucrose metabolism: regulatory mechanisms and pivotal roles in sugar sensing and

plant development. Curr. Opin. Plant BioI. 7, 235-246.

Kolossov VL and Rebeiz CA. (2001) Chloroplast biogenesis 84: Solubilization and partial purification

of membrane-bound [4-vinyl] chlorophyllide a reductase from etiolated barley leaves. Anal.

Biochem. 295: 214-219.

Kopriva S, Koprivova A. (2004) Plant adenosine 5'-phosphosulfate reductase: the past, the present,

and the future. J Exp Bot 55: 1775-1783.

Kopriva S, Wiedemann G, Reski R. (2007) Sulphate assimilation in basal land plants-what does

genomic sequencing tell us? Plant BioI; 9:556-64.

Kopriva S. (2006) Regulation of sulfate assimilation in Arabidopsis and beyond. Annals. Bot. 97:479-

95.

Kozaki, A. and Takeba, G. (1996), Photorespiration protects C3 plants from photooxidation. Nature,

384, 557-560.

Krause GH, Weis E (1991) Chlorophyll fluorescence and photosynthesis: The basics. Annu Rev Plant

Physiol Mol Bioi 42: 313-349.

Kronzucker HJ, Siddiqi MY, Glass ADM. 1995. Compartmentation and flux characteristics of

nitrate in spruce. Planta 196, 674-682.

Krorenberger J, Lepingle A,Caboche M and Vaucheret H. (1993) Cloning and expression of

distinct nitrite reductase in tobacco leaves and roots. MoI.Gen. Genet.236, 203-208.

186

c:Rfferences

Kruse C, Jost R, Lipschis M, Kopp B, Hartmann M, Hell R (2007) Sulfur-enhanced defence:

effects of sulfur metabolism, nitrogen supply, and pathogen lifestyle. Plant Bioi 9: 608-619.

Kruse C, Jost R, Lipschis M, Kopp B, Hartmann M, Hell R (2007) Sulfur-enhanced defence:

effects of sulfur metabolism, nitrogen supply, and pathogen lifestyle. Plant Bioi 9: 608-619.

Kruse E, Mock HP and Grimm B. (1995b) Coproporphyrinogen III oxidase from barle and tobacco­

sequence analysis and initial expression studies. Planta. 196: 796-803.

Kuras L, Cherest H, Surdin-Kerjan Y, Thomas D. (1996) A heteromeric complex containing the

centromere binding factor! and two basic leucine zipper factors, Met4 and Met28, mediates

the transcription activation of yeast sulfur metabolism. EMBO J. 15:2519-29.

Kushnir, S. et at. (2001) A mutation of the mitochondrial ABC transporter Stal leads to dwarfism and

chlorosis in the Arabidopsis mutant starik. Plant Cell 13, 89-10045.

Kutz A, M" uller A, Hennig P, Kaiser WM, Piotrowski M, Weiler EW. (2002). A role for nitrilase 3

in the regulation of root morphology in sulphur-starving Arabidopsis thaliana. Plant J. 30:95-

106.

LaBrie, ST, and Crawbrd, N.M. (1994). A glycine to aspartic acid change in the MoCo domain of

nitrate reductase reduces both activity and phosphorylation levels in Arabidopsis. J. BioI.

Chern. 269, 14497-14501.

Lahners K, Kramer V, Back E, Privalle L, Rothstein S. (1988) Molecular Cloning of

Complementary DNA Encoding Maize Nitrite Reductase: Molecular Analysis and Nitrate

Induction. Plant Physio( 88(3):741-746.

Lammeli UK. (1970) Cleavage of structural proteins during the assembly of the head of bacteriophage

T4. Nature. 227: 680-685.

Lancien, M. et at. (2002) Arabidopsis gltl-T mutant defines a role of NADH-GOGAT in the non­

photorespiratory ammonium assimilatory pathway. Plant J. 29, 347-358.

Lappartient AG, Vidmar JJ, Leustek T, Glass ADM, Touraine B (1999) Inter-organ signaling in

plants: regulation of ATP sulfurylase and sulfate transporter genes expression in roots

mediated by phloem-translocated compounds. Plant J 18: 89-95.

Lawlor DW. (2002). Carbon and N assimilation in relation to yield: mechanisms are the key to

understanding production systems. J Exp Bot; 53:773-87.

Le'on, S. et at. (2002) The AtNFS2 gene from Arabidopsis thaliana encodes a Nif S-like plastidial

cysteine desulphurase. Biochem. J. 366, 557-56446

Lea P, Forde B. 1994. Studies of amino acid biosynthesis in transgenic plants. Plant, Cell and

Environment 17, 541-556.

187

CRsferences

Lea PJ (1997) Primary nitrogen metabolism. In: Dey PM, Harborne JB (eds) Plant biochemistry.

Academic Press, San Diego, pp 273-3l3.

Lea PJ, Blackwell RD, Joy KW (1992) Ammonia assimilation in higher plants. In (K Mengel, DJ

Pilbeam eds) "Nitrogen Metabolism of Plants", Clarendon Press, Oxford, pp 153-186.

Lee S, Leustek T (1999) The effect of cadmium on sulfate assimilation enzymes in Brassica junceq.

Plant Sci 141: 201-207.

Leegood RC, Lea PJ, Adcock MD, Hausler RE. (1995) The regulation and control of

photorespiration. Journal of Experimental Bot. 46: l397-1414.

Lejay L, Tillard P, Lepetit M, Olive F, Filleur S, Daniel-Vedele F, Gojon A (1999) Molecular and

functional regulation of two N03-2 uptake systems by N- and C-status of Arabidopsis plants.

Plant J 18: 509-519.

Lencioni L, Ranieri A, Fergola S, Soldatini G. (1997) Photosynthesis and metabolic changes in

leaves of rapeseed grown under long-term sulfate deprivation. 1. Plant Nutr. 20:405-15.

Leustek T, Martin MN, Bick JA, Davies JP. (2000). Pathways and regulation of sulfur metabolism

revealed through molecular and genetic studies. Annu. Rev. Plant Physiol. Plant Mol. Bioi.

51:141-65.

Leustek T, Saito K (1999) Sulfate transport and assimilation in plants. Plant Physiol120: 637-643

Leustek T, Smith M, Murillo M, Singh DP, Smith AG, Woodcock SC, Awan SJ, Warren MJ.

(1997) Siroheme biosynthesis In higher plants. Analysis of an S-adenosyl-L­

methioninedependent uroporphyrinogen III methyltransferase from Arabidopsis thaliana. J

BioI Chern; 272:2744-52.

Lewandowska M, Wawrzynska A, Kaminska J, Liszewska F, Sirko A (2005) Identification of

novel proteins of Nicotiana tabacum regulated by short term sulfur starvation. In Sulfur

Transport and Assimilation in Plants in the Postgenomic Era. Saito K, De Kok LJ, Stuhlen I,

Hawkesford MJ, Schnug E, Sirko A, Rennenberg H, eds, pp 153-156. Backhuys

Publishers,Leiden, The Netherlands.

Lewandowska, M. and Sirko, A. (2008) Recent advances in understanding plant response to sulfur­

deficiency stress. Acta BiochemiaPolonicaVol. 55 No. 312008, 457--471. Scherer HW (2001)

Sulphur in crop production - invited paper. Eur J Agron 14: 81-111.

Li, H-M. et at. (1990) Metal-ion-center assembly of ferredoxin and plastocyanin In isolated

chloroplasts. Proc. Natl. Acad. Sci. U. S. A. 87, 6748-6752.

188

CR§ferences

Lillo C, Lea US, Leydecker M-T, Meyer C. 2003. Mutation of the regulatory phosphorylation site of

tobacco nitrate reductase results in constitutive activation of the enzyme in vivo and nitrite

accumulation. The Plant Journal. 35 ; 566-573.

Lillo C. (2008) Signalling cascades integrating lightenhanced nitrate metabolism. Biochem J; 415: 11-

9.10.

Lim SH, Witty M, Wallace-Cook AD, Hag LI and Smith AG. (1994) Porphobilinogen deaminase is

encoded by a single gene in Arabidopsis thaliana and is targeted to the chloroplasts.Plant Mol

Bioi. 26: 863-872.

Linka M, Weber AP. (2005) Shuffling ammonia between mitochondria and plastids during

photorespiration. Trends Plant Sci.1 0(1 0):461-5.

Little DY, Rao N, Oliva S, Daniel-vedele F, Anne Krapp, and Malamy JE. (2005). The putative

high affinity nitrate transporter NRT 2.1 repress lateral root initiation in response to nutritional

cues. PNAS. Vol. 102:13693-13698.

Little, D.Y. et al. (2005) The putative high-affinity nitrate transporter NRT2.l represses lateral root

initiation in response to nutritional cues. Proc. Natl. Acad. Sci. U. S. A. 102, 13693-13698.

Liu KH, Huang CY, Tsay YF. (1999) CHLl is a dual-affinity nitrate transporter of Arabidopsis

involved in multiple phases of nitrate uptake. Plant Cell.I 1(5):865-74.

Lo'pez-Buico, J. et al. (2003) The role of nutrient availability in regulating root architecture. Curr.

Opin. Plant BioI. 6, 280-287.

Loiseau, L. et al. (2003) Biogenesis of Fe-S cluster by the bacterial Suf system: SufS and SufE form a

new type of cysteine desulfurase. J. BioI. Chern. 278, 38352-38359.

Lopez-Bucio J, Cruz-Ramirez A, Herrera-Estrella L.( 2003) The role of nutrient availability in

regulating root architecture. Curro Opin. Plant Bio!. 6:280-87.

Loulakakis KA, Roubelakis-Angelakis KA. (1996) The seven NAD(H)glutamate dehydrogenase

isoenzymes exhibit similar anabolic and catabolic activities. Physiologia Plantarum. 96:29-35.

Lunde C, Zygadlo A, Simonsen HT, Nielsen PL, Blennow A, Haldrup A. (2008 ) Sulfur starvation

in rice: the effect on photosynthesis, carbohydrate metabolism, and oxidative stress protective

pathways. Physiol Plant.l34 (3):508-21.

Luo J and Lim CK. (1993) Order ofurogen III decarboxylation on incubation ofPBG and urogen III

with erythrocyte UDC. Biochem J. 289: 529-532.

MacKintosh C, Douglas P, Lillo C (1995) Identification of protein that inhibits the phosphorylation

form of nitrate reductase from spinach (Spinacia oleracea) leaves. Plant Physiol 84: 58-60.

189

~ferences

MagalhaesJR, Ju GC, Rich PJ, Rhodes D (1990) Kinetics of 15NH/ assimilation in Zea mays:

Preliminary studies with a glutamate dehydrogenase (GDH1) null mutant. Plant Physiol. 94:

647-656.

Mallory AC, Vaucheret H. (2006) Functions of microRNAs and related small RNAs in plants. Nat.

Genet. 38 Suppll:31-36.

Man, H. M., Boriel, R., EI-Khatib, R. and Kirby, E. G. (2005), Characterization of transgenic poplar

with ectopic expression of pine cytosolic glutamine synthetase under conditions of varying

nitrogen availability. New Phytol. 167, 31.

Marschner H (1995) Mineral Nutrition of Higher Plants. Academic Press, San Diego.

Martin, T. et al. (2002) Arabidopsis seedling growth, storage lipid mobilization, and photosynthetic

gene expression are regulated by carbon:nitrogen availability. Plant Physiol. 128, 472-481.

Martins BM, Grimm B, Mock HP, Huber R and Messerschmidt A. (2001) Crystal structure and

substrate binding modeling of the uroporphyrinogen III decarboxylase from Nicotiana

tabacum. Implications for catalytic mechanism. J Bioi Chern. 276: 44108-44116.

Maruyama-Nakashita A, Inoue E,Watanabe-Takahashi A, Yamaya T,Takahashi H. (2003)

Transcriptome profiling of sulfur-responsive genes in Arabidopsis reveals global effects of

sulfur nutrition on multiple metabolic pathways. Plant Physiol. 132:597-605.

Maruyama-Nakashita A, Nakamura Y, Tohge T, Saito K, Takahashi H. (2006) SLIMIIEIL3

transcription factor required for plant growth on low sulfur environment. Presented at IntI.

Conf. on Arabidopsis Res., 17th, Madison,Wis.

Maruyama-Nakashita A, Nakamura Y, Watanabe-Takahashi A, Yamaya T, Takahashi H. (2004)

Induction of SUL TR1; 1 sulfate transporter in Arabidopsis roots involves protein

phosphorylation/dephosphorylation circuit for transcriptional regulation. Plant Cell Physiol.

45:340-45.

Maruyama-Nakashita A, Nakamura Y,Watanabe-Takahashi A, Inoue E, Yamaya T,Takahashi

H.( 2005) Identification of a novel cis-acting element conferring sulfur deficiency response in

Arabidopsis roots. Plant 1. 42:305-14.

Maruyama-Nakashita A, Nakamura Y,Yamaya T,Takahashi H. (2004) Regulation of highaffinity

sulphate transporters in plants: towards systematic analysis of sulphur signaling and

regulation. J. Exp. Bot. 55:1843-49.

Masclaux C, Quillere I, Gallis A, Hirel B (2001). The challenge of remobilization in plant nitrogen

economy. A survey of physio-agronomic and molecular approaches. Ann. Appl. BioI., 138:

69-81.

190

CJ?sferences

Matsumura T, Kimata-Ariga Y, Sakakibara H, Sugiyama T, Murata H, Takano T, Shimonishi

Y, Hase T. (1999) Complementary DNA cloning and characterization of ferredoxin

localized in bundle-sheath cells of maize leaves. Plant Physiol 119: 481-488.

Matsuzaki M, Misumi 0, Shin-I T, Maruyama S, Takahara M, Miyagishima SY, Mori T,

Nishida K, Yagisawa F, Nishida K, Yoshida Y, Nishimura Y, Nakao S, Kobayashi T,

Momoyama Y, Higashiyama T, Minoda A, Sa no M, Nomoto H, Oishi K, Hayashi H,

Ohta F, Nishizaka S, Haga S, Miura S, Morishita T, Kabeya Y, Terasawa K, Suzuki Y,

Ishii Y, Asakawa S, Takano H, Ohta N, Kuroiwa H, Tanaka K, Shimizu N, Sugano S,

Sato N, Nozaki H, Ogasawara N, Kohara Y and Kuroiwa T. (2004) Genome sequence of

the ultras mall unicellular red alga Cyanidioschyzon merolae IOD. Nature. 428: 653-657.

McCormac AC, Fischer A, Kumar AM, Soli D and Terry MJ. (2001) Regulation of HEMAl

expression by phytochrome and a plastid signal during de-etiolation in Arabidopsis thaliana.

PlantJ. 25: 549-561.

Meister A. (1995) Glutathione metabolism. Methods Enzymol; 252:26-30.

Melo-0Iiveira, R. et al. (1996) Arabidopsis mutant analysis and gene regulation define a

nonredundant role for glutamate dehydrogenase in nitrogen assimilation. Proc. Nat!. Acad.

Sci. U. S. A. 93,4718-4723.

Miflin BJ, Lea PJ (1980) Ammonia assimilation. In (BJ Miflin ed) "The Biochemistry of Plants" Vol

5, Academic Press, New York, pp 169 - 202.

Migge, A., Carrayol, E., Hirel, B. and Becker, T. W. (2000), Leaf specific overexpression of

plastidic glutamine synthetase stimulates the growth of transgenic tobacco seedlings. Planta.2,

252-260.

Misson J, Raghothama KG, Jain A, Jouhet J, Block MA, et al.( 2005) A genomewide

transcriptional analysis using Arabidopsis thaliana Affymetrix gene chips determined plant

responses to phosphate deprivation. Proc. Natl. Acad. Sci. USA

Misson J, Raghothama KG, Jain A, Jouhet J, Block MA, et al.( 2005) A genome wide

transcriptional analysis using Arabidopsis thaliana Affymetrix gene chips determined plant

responses to phosphate deprivation. Proc. Nat!. Acad. Sci. USA. 102:11934-39.

Miura K, Rus A, Sharkhuu A, Yokoi S, Karthikeyan AS, et al. (2005) The Arabidopsis SUMO E3

ligase SIZI controls phosphate deficiency responses. Proc. Nat!. Acad. Sci. USA 102:7760-65

Mock HP and Grimm B. (1997) Rduction of uroporphyrinogen decarboxylase by antisense RNA

expression affects activities of other enzymes involved in tetrapyrrole biosynthesis and leads

to light dependent necrosis. Plant Physio!. 113: 1101-1112.

191

Cf<§jerences

Moulin M, et al. (2008) Tetrapyrrole profiling in Arabidopsis seedlings reveals that retrograde plastid

nuclear signalling is not due to Mg-protoporphyrin IX accumulation. Proc Natl Acad Sci

USA; 105:15178- 83.

Muhlenhoff U and Lill R (2000) Biogenesis of iron-sulfur proteins in eukaryotes: a novel task of

mitochondria that is inherited from bacteria. Biochim Biophys Acta 1459: 370-382.

Murashige T and Skoog F. (1962) A revised medium for rapid growth and bio-assays with tobacco

tissue cultures. Plant Physiol. 15: 473-497.

Murphy MJ, Siegel LM, Tove SR, Kamin H.(1974) Siroheme: a new prosthetic group participating

in six-electron reduction reactions catalyzed by both sulfite and nitrite reductases. Proc Natl

Acad Sci USA. 71(3):612-6.

Muttucumaru N, Halford NG, Elmore JS, Dodson AT, Parry M, Shewry PR, Mottram DS (2006)

Formation of high levels of acry1amide during the processing of flour derived from su1fate­

deprived wheat. J Agric Food Chern 54: 8951- 8955.

Nagata N, Tanaka R, Satoh S and Tanaka A. (2005) Identification of a Vinyl Reductase Gene for

Chlorophyll Synthesis in Arabidopsis tha1iana and Implications for the Evolution of

Prochlorococcus Species. Plant Cell. 17: 233-240.

Nakanishi H, Nozue H, Suzuki K, Kaneko Y, Taguchi G and Hayashida N. (2005)

Characterization of the Arabidopsis thaliana Mutant pcb2 which Accumulates Divinyl

Ch10rophylls. Plant Cell Physiol. 46: 467-473.

Nandi DL. (1978) Lysine as the substrate binding site of porphobilinogen synthase of

Rhodoseudornonas sphaeroides. Z Naturforsch. 33: 799-800.

Naoko Yoshimoto, Eri Inoue, Kazuki Saito, Tomoyuki Yamaya, and Hideki Takahashi (2003)

Phloem-Localizing Sulfate Transporter, Sultrl;3, Mediates Re-Distribution of Sulfur from

Source to Sink Organs in Arabidopsis. Plant Physio1, April, Vol. 131, pp. 1511-1517

Nielsen, T.H. et al. (1998) The sugar-mediated regulation of genes encoding the small subunit of

Rubisco and the regulatory subunit of ADP glucose pyrophosphorylase is modified by

nitrogen and phosphate. Plant Cell Environ. 21, 443-455.

Nikiforova V, Freitag J, Kempa S, Adamik M, Hesse H, Hoefgen R. (2003) Transcriptome analysis

of sulfur depletion in Arabidopsis thaliana: interacting of biosynthetic pathways provides

response specificity. Plant J. 33:633-50.

Nikiforova VJ, Kopka J,Tolstikov V, Fiehn 0, Hopkins L, et al. (2005) Systems rebalancing of

etabolism in response to sulfur deprivation, as revealed by metabolome analysis of

Arabidopsis plants. Plant Physiol. 138:304-18.

192

CRgferences

Noji M, Inoue K, Kimura N, Gouda A, Saito K (1998) Isoform-dependent differences in feedback

regulation and subcellular localization of serine-acetyltransferase involved III cysteine

biosynthesis from Arabidopsis thaliana. J Bioi Chern 273: 32739-32745.

Nussaume, L., Vincentz, M., Meyer, c., Boutin, J.P., and Caboche, M. (1995). Post-transcriptional

regulation of nitrate reductase· by light is abolished by an N-terminal deletion. Plant Cell 7,

611-621.

Ogren, W.L. (1984) Photorespiration: pathways, regulation, and modification. Annu. Rev. Plant BioI.

35,415-442.

Okamoto M, Vidmar JJ, Glass AD (2003) Regulation of NRTl and NRT2 gene families of

Arabidopsis thaliana: responses to nitrate provision. Plant Cell Physiol44: 304-317.

Oliver RP and Griffiths WT. (1982) Pigment-protein complexes of illuminated etiolated leaves. Plant

Physiol. 70: 1019-1025.

Onouchi H, Lambein I, Sakurai R, Suzuki A, Chiba Y and Naito S (2004) Autoregulation of the

gene for cystathionine c-synthase in Arabidopsis: post-transcriptional regulation induced by S­

adenosylmethionine. Biochem Soc Trans 32: 597-600.

Orsel M, Krapp A, Daniel-Vedele F (2002) Analysis of the NRT2 nitrate transporter family in

Arabidopsis: structure and gene expression. Plant Physiol 129: 886-896.

Outten, F.W. et al. (2003) The SufE protein and the SufBCD complex enhance SufS cysteine

desulfurase activity as part of a sulfur transfer pathway for Fe-S cluster assembly in

Escherichia coli. J. BioI. Chern. 278,45713-45719.

Paietta J. (1992) Production of the CYS3 regulator, a bZIP DNA-binding protein, is sufficient to

induce sulfur gene expression in Neurospora crassa. Mol. Cell. Bioi. 12: 1568-77.

Papenbrock J, Mock HP, Kruse E and Grimm B. (1999) Expression studies on tetrapyrrole

biosynthesis: inverse maxima of magnesium chelatase and ferrochelatase activity during

cyclic photoperiods. Planta. 208: 264-273.

Parham Rand Rebeiz CA. (1995) Chloroplast biogenesis 72: a [4-vinyl] chlorophyllide a reductase

assay using divinyl chlorophyll ide a as an exogenous substrate. Anal. Biochem. 231: 164-169.

Parisy V, et al. (2007) Identification ofPAD2 as a gamma- glutamy1cysteine synthetase highlights the

Partensky, F., Hess, W.R., and Vaulot, D. (1999). Pro chi oro coccus, a marine photosynthetic

prokaryote of global significance. Microbiol. Mol. BioI. Rev. 63, 106-127.

Peck, H.D. and T. Lissolo. 1988) The nitrogen and sulfur cycles. Symposium of the Society for

General Microbiology, ed. J.A. Cole. 1988, Cambridge: Cambridge University Press. 99-132.

193

CRsferences

Phillips JD, et al. (2003) Structural basis for tetrapyrrole coordination by uroporphyrinogen

decarboxylase. Physiol Plant Mol Bioi; 49:249-79.

Pilon M, et al. (2006) Biogenesis of iron-sulfur cluster proteins in plastids. Genet Eng (NY); 27: 101-

17.

Pilon-Smits, E.A.H. et al. (2002) Characterization of a Nif S-like chloroplast protein from

Arabidopsis. Implications for its role in sulfur and selenium metabolism. Plant Physiol. 130,

1309-1318.

Pogson BJ, et al. (2008) Plastid signalling to the nucleus and beyond. Trends Plant Sci; 13:602-9.

Pontoppidan B, and Kannangara CG. (1994) Purification and partial characterization of barley

glutamyl-tRNAglu reuctase, the enzyme that directs glutamate to chlorophyll biosynthesis.

Eur J Biochem 225: 529-537.

Porra RJ, Thompson W A and Kriedemann PE. (1989) Determination of accurate extintion

coefficients and simultaneous equations for assaying chlorophylls a and b extracted with four

different solvents: verification of the concentration of chlorophyll standrads by atomic

absorption spectroscopy. Biochim Biophys Acta. 975: 384-394.

Porra, R.J. (1997). Recent progress in porphyrin and chlorophyll biosynthesis. Photochem. Photobiol.

63,492-516.

Porra RJW, Schafer E, Cmiel IK and Scheer H. (1993) Derivation of the formyl group oxygen of

chlorophyll b from molecular oxygen in greening leaves of a higher plant (Zea mays). FEBS

Lett. 371: 21-24.

Poulson Rand Poiglasse WJ. (1974) Aerobic and anaerobic Coproporphyrinogen oxidase activities in

extract from Saccharomyces cerevisiae. J Bioi Chem. 249: 6367-6371.

Price, J. et al. (2004) Global transcription profiling reveals multiple sugar signal transduction

mechanisms in Arabidopsis. Plant Cell 16, 2128-2150.

Prosser I, Purves J, Saker L, Clarkson D. (2001) Rapid disruption of nitrogen metabolism and

nitrate transport in spinach plants deprived of sulphate. J. Exp. Bot. 52: 113-21.

Prosser I, Purves J, Saker L, Clarkson D. (2001) Rapid disruption of nitrogen metabolism and

nitrate ransport in spinach plants deprived of sulphate. J. Exp. Bot. 52: 113-21.

Prosser I, Purves J, Saker L, Clarkson D. (2001) Rapid disruption of nitrogen metabolism and

nitrate ransport in spinach plants deprived of sulphate. J. Exp. Bot. 52:113-21.

Provan F, Lillo C. 1999. Photosynthetic post-translational activation of nitrate reductase. Journal of

Plant Physiology 154, 605-609.

194

CR.§ferences

Purnell MP, Skopelitis DS, Roubelakis-Angelakis KA, Botella JR. (2005) Modulation of higher­

plant NAD(H)-dependent glutamate dehydrogenase activity in transgenic tobacco via

alteration ofbeta subunit levels. Planta. 222: 167-180.

Quillere, I., Dufosse, c., Roux, Y., Foyer, C. H., Caboche, M. and Morot-Gaudry, J. F. (1994) the

effects of deregulation of NR gene expression on growth and nitrogen metabolism of

Nicotiana plumbaginifolia. plants. 1. Exp. Bot. 45, 1205-1211.

Rastogi R, Bate NJ, Sivasankar S, Rothstein SJ (1997) Footprinting of the spinach nitrite reductase

gene promoter reveals the preservation of nitrate regulatory elements between fungi and

higher plants. Plant Mol BioI. 1997 Jun;34(3):465-76.

Rausch T, Wachter A (2005) Sulfur metabolism: a versatile platform for launching defence

operations. Trends Plant Sci 10: 503-509.

Raux E, et al. (1999) The role of Saccharomyces cerevisiae Metlp and Met8p in sirohaem and

cobalamin biosynthesis.Biochem J; 338:701-8.

Raux E, et al. (2003) Identification and functional analysis of enzymes required for precorrin-2

dehydrogenation and metal ion insertion in the biosynthesis of sirohaem and cobalamin in

Bacillus megaterium.

Raux-Deery E, Leech HK, Nakrieko KA, McLean KJ, Munro A W, Heathcote P, Rigby SE, Smith

AG, Warren MJ. (2005) Identification and Characterization of the Terminal Enzyme of

Siroheme Biosynthesis from Arabidopsis thaliana. 1. Biol.Chem.Vol. 280, No.6, Issue of

February 11, pp. 4713-4721.

Ravanel S, Block MA, Rippert P, Jabrin S, Curien G, Re'beille' F and Douce R (2004) Methionine

metabolism in plants: chloroplasts are autonomous for de novo methionine synthesis and can

import S-adenosylmethionine from the cytosol. J BioI Chern 279: 22548-22557.

Ravanel S, Gakie're B, Job D and Douce R (1998a) Cystathionine c-synthase from Arabidopsis

thaliana: purification and biochemical characterization of the recombinant enzyme over­

expressed in Escherichia coli. Biochem J 231: 639-648.

Ravanel S, Gakiere B, Job D and Douce R (1 998b ) The specific features of methionine biosynthesis

and metabolism in plants. Proc Nat! Acad Sci USA 95: 7805-7812.

Ravanel S, Job D and Douce R (1996) Purification and properties of cystathionine b-lyase from

Arabidopsis thaliana overexpressed in Escherichia coli. Biochem J 320: 383-392.

Ravina CG, Chang CI, Tsakraklides GP, McDermott JP, Vega JM, et al. (2002) The sac mutants

of Chlamydomonas reinhardtii reveal transcriptional and posttranscriptional control of

cysteine biosynthesis. Plant Physiol. 130:2076--84.

195

~ferences

Remans, T. et al. (2006) A central role for the nitrate transporter NRT2.1 in the integrated

morphological and physiological responses of the root system to nitrogen limitation in

Arabidopsis. Plant Physiol. 140,909-921.

Rhodes D, Sims AP, Folkes BF (1980) Pathway of ammonia assimilation in illuminated Lemna minor.

Phytochem. 19: 357-365.

Rieble S, Ormerd JG and Beale SI. (1989) Transformation of glutamate to delta-aminolevulinic acid

by soluble extracts ofChlorobium vibrioforme. J Bacteriol17l: 3782-3787.

Riens B and Heldt HW, 1992. Decrease of nitrate reductase activity in spinach leaves during light­

dark transitions. Plant Physiology 98, 573-577.

Robinson D (1994) The responses of plants to non-uniform supplies of nutrients. New Phytol 127:

635-674.

Robinson SA, Stewasrt GR, Phillips R (1992). Regulation of glutamate dehydrogenase activity in

relation to carbon limitation and protein catabolism in carrot cell suspension culture. Plant

Physiol., 98: 1190-1195.

Rotte C, Leustek T. (2000) Differential subcellular localization and expression of ATP sulfurylase and

APS reductase during ontogenesis of Arabidopsis thaliana leaves indicates that cytosolic and

plastid forms of ATP sulfurylase may have specialized functions. Plant Physiol124: 715-724.

Rudiger W, Benz J and Guthoff C. (1980) Detection and partial characterization of activity of

chlorophyll synthetase in etioplast membranes. Eur J Biochem. 109: 193-200.

Rzeznicka K, Walker CJ, Westergren T, Kannangara CG, von Wettstein D, Merchant S, Gough

SP and Hansson M. (2005) Xantha-l encodes a membrane subunit of the aerobic Mg­

protoporphyrin IX monomethyl ester cyclase involved in chlorophyll biosynthesis. Proc Nat!

Acad Sci USA. 102: 5886-5891.

Sa'nchez-Caldero'n, L. et al. (2005) Phosphate starvation induces a determinate developmental

program in the roots of Arabidopsis thaliana. Plant Cell Physiol. 46, 174-184

Sa'nchez-Caldero'n, L. et al. (2006) Characterization of low phosphorus insensitive (lpi) mutants

reveals a crosstalk between low P-induced determinate root development and the activation of

genes involved in the adaptation of Arabidopsis to P deficiency. Plant Physiol. 140,879-889.

Saito K. (2000) Regulation of sulfate transport and synthesis of sulfur-containing amino acids. CUIT

Opin Plant Bioi 3: 188-195.

Saito K. (2004) Sulfur assimilatory metabolism. The long and smelling road. Plant

Physiol.136( 1 ):2443-50.

196

~ferences

Sakakibara H, et al. (1996) Isolation and characterization of a cDNA that encodes maize

uroporphyrinogen III.

Sakakibara H, Suzuki M, Takei K, Deji A, Taniguchi M, Sugiyama T. (1998). A responseregulator

homologue possibly involved in nitrogen signal transduction mediated by cytokinin in maize.

Plant J. 14:337--44.

Sakakibara H. 2006. Cytokinins: activity, biosynthesis, and translocation. Annu. Rev. Plant Bioi.

57:431--49.

Sambrook J, Fritsch EF and Maniatis T. (1989) Molecular cloning: a laboratory manual.

Sanda S, Leustek T, Theisen MJ, Garavito RM, Benning C. (2001) Recombinant Arabidopsis

SQDl converts UDP-glucose and sulfite to the sulfolipid head group precursor UDP­

sulfoquinovose in vitro. J BioI Chern 276: 3941-3946.

Sander L, Jensen PE, Back LF, Stummann BM, Henningsen KW.(l995) Structure and expression

of a nitrite reductase gene from bean (Phaseolus vulgaris) and promoter analysis in transgenic

tobacco. Plant Mol BioI. Jan;27(1):165-77.

Santel HJ and Apel K. (1981) The protochlorophyllide holochrome of barley (Hordeum vulgare L.).

The effect of light on the NADPH:protochlorophyllide oxidoreductase. Eur J Biochern. 120:

95-103.

Schachtman DP, Shin R.(2007) Nutrient sensing and signaling: NPKS. Annu Rev Plant BioI. 2007;

58:47-69.

Scheible WR, Gonzalez-Fontes A, Lauerer M, Muller-Rober B, Caboche M, Stitt M. (1997).

Nitrate acts as a signal to induce organic acid metabolism and repress starch metabolism in

tobacco. Plant Cell 9:783-98

Scheible, W. R., Gonzalez-Fontes, A., Lauerer, M., Muller-Rober, B., Caboche, M. and Stitt, M.

(1997), Nitrate acts as a signal to induce organic acid metabolism and repress starch

metabolism in tobacco. Plant Cell, 1997,9, 783-798.

Scheible, W.R. et al. (2004) Genome-wide reprogramming of primary and secondary metabolism,

protein synthesis, cellular growth processes, and the regulatory infrastructure of Arabidopsis

in response to nitrogen. Plant PhysioI. 136,2483-2499.

Schmid HC, Rassadina V, Oster U, Schoch S and Rudiger W. (2002) Pre-loading of chlorophyll

synthase with tetraprenyl diphosphate is an obligatory step in chlorophyll biosynthesis. Bioi

Chern. 383: i769-1778.

Schoefs B and Bertrand M. (2000) The formation of chlorophyll from chlorophyllide in leaves

containing proplastids is a four-step process. FEBS lett. 486: 243-246.

197

CR.§ferences

Schoenbeck, M. A. et ai., (2000) Decreased NADH-glutamate synthase activity in nodules and flowers

of alfalfa (Medicago sativa L.) transformed with an antisense glutamate synthase transgene. 1.

Exp. Bot.51, 29-39.

Schreiber U, Armond P (1978) Heat-induced changes of chlorophyll fluorescence in isolated

chloroplasts and related heat-damage at the pigment level. Biochim Biophys Acta 502: 138-

151.

Schubert HL, et al (2002). The structure of Saccharomyces cerevisiae Met8p, a bifunctional

dehydrogenase and ferrochelatase. EMBO J; 21 :2068-75.

Schubert HL, Raux E, Matthews MA, Phillips JD, Wilson KS, Hill CP, Warren MJ. (2002)

Structural diversity in metal ion chelation and the structure of uroporphyrinogen III synthase.

Biochem Soc Trans. 30: 595-600.

Seehra JS, Jordan PM and Akhtar M. (1983) Anaerobic and aerobic coproporphyrinogen III oxidase

of Rhodopseudomonas sphaeroides. Biochem 1. 209: 709-718.

Sekine S, Nureki 0, Dubois DY, Bernier S, Chenevert R, Lapointe J, Vassylyev DG and

Yokoyama S. (2003) ATP binding by glutamyl-tRNA synthetase is switched to the

productive mode by tRNA binding. EMBO J. 22: 676-688.

Seligman K, Saviani EE, Oliveira HC, Pinto-Maglio CA, Salgado I. (2008)Floral transition and

nitric oxide emission during flower development in Arabidopsis thaliana is affected in nitrate

reductase-deficient plants. Plant Cell Physiol. 49(7):1112-21.

Setya A, Murillo M, Leustek T. (1996) Sulfate reduction in higher plants: molecular evidence for a

novel 5-adenylylsulfate reductase. Proc. Natl. Acad. Sci. USA 93: 13383-88.

She min D. (1976) 5-Aminolevulinic acid dehydratase: Structure, function and mechanism. Phi/os

Trans R Soc London. 273: 109-115.

Sherameti I, et al. (2008) PYK10, a f3-glucosidase located in the endoplasmatic reticulum, is crucial

for the beneficial interaction between Arabidopsis thaliana and the endophytic fungus

Piriformospora indica. Plant 1.

Shibagaki N, Rose A, McDermott JP, Fujiwara T, Hayashi H, Yoneyama T, Davies JP (2002)

Selenate-resistant mutants of Arabidopsis thaliana identify Sultr];2, a sulfate transporter

required for efficient transport of sulfate into roots. Plant J 29: 475-486.

Shimazaki K, Yu S, Sakaki T, Tanaka K (1992) Differences between spinach and kidney bean plants

in terms of sensitivity to fumigation with N02. Plant Cell Physiol33: 267-273.

198

~ferences

Shin R, Berg RH, Schachtman DP. (2005). Reactive oxygen species and root hairs in Arabidopsis

root response to nitrogen, phosphorus and potassium deficiency. Plant Cell Physiol. 46: 1350-

57.

Shin R, Schachtman DP. (2004). Hydrogen peroxide mediates plant root response to nutrient

deprivation. Proc. Nat!. Acad. Sci. USA 101:8827-32.

Siddiqi MY, Glass ADM, Ruth TJ, Rufty TW. 1990. Studies of the uptake of nitrate in barley. I.

Kinetics of I3N03-influx. Plant Physiology 93,1426-1432.

Siegel, L.M. (1975) BiochemistlY of the sulfur cycle. Metabolic Pathways., New York: Academic

Press.

Sivasankar S, Oaks A (1996) Nitrate assimilation in higher plants: The e€ects of metabolites and

light. Plant Physiol Biochem 34: 609-620.

Smith F, Eating P, Hawkesford M, Clarkson D. (1995) Plant members of a family of sulfate

transporters reveal functional subtypes. Proc. Natl. Acad. Sci. USA 92:9373-77

Smith FW, Hawkesford MJ, Ealing PM, Clarkson DT, Vanden Berg PJ, Belcher AR, Warrilow

AG (1997) Regulation of expression of a cDNA from barley roots encoding a high affinity

sulphate transporter. Plant 1 12: 875-884.

Smith AG and Francis JE. (1981) Investigations of rat liver uroporphyrinogen decarboxylase.

comparisons of porphyrinogens I and III as substrate nad inhibition by porphyrins. Biochem

J. 195: 241-250.

Smith FW, Rae AL, Hawkesford MJ. 2000. Molecular mechanisms of phosphate and sulphate

transport in plants. Biochimica et Biophysica Acta 1465,236-245.

Smith MA and Grimm B. (1992) Gabaculine resistance of Synechococcus glutamate 1-semialdehyde

aminotransferase. Biochemistry. 31: 4122-4127.

Smith, A.G. et al. (1999). Compartmentation of tetrapyrrole metabolism in higher plants. In Plant

Carbohydrate Metabolism (Bryant, 1.A. et aI., eds), pp. 281-294, BIOS Scientific Publishers.

Smolders E, Merckx R. (1992). Growth and shoot root partitioning of spinach plants as affected by

nitrogen supply. Plant, Cell and Environment 15, 795-807.

Somerville, c.R. and Ogren, W.L. (1980) Inhibition of photosynthesis III Arabidopsis mutants

lacking leaf glutamate synthase activity. Nature 286, 257-259.

Southeren EM. (1975) Detection of specific sequences among DNA fragments separated by gel

electrophoresis. J. Mol. Boil. 98: 503-517.

199

~ferences

Spencer P and Jordan PM. (1994) 5-Aminolevulinic acid dehydratase: Characterization of the a and

B metal-binding sites of the Escherichia coli Enzyme . In the biosynthesis of tetrapyrrole

pigments. Ciba Foundation Symposium 180, D.l Chadwick and K.Ackrill, eds (Chichester,

England: John Weily and Sons). pp.50-64.

Spencer P and Jordan PM. (1995) Characterization of the two 5-aminolevulinic acd binding sites of

5-aminolevulinic acid dehydratase from Escheichia coli. Biochern J. 305: 151-158.

Steegborn C, Messerschmidt A, Laber B, Streber W, Huber R and Clausen T (1999) The crystal

structure of cystathionine gamma-synthase from Nicotiana tabacum reveals its substrate and

reaction specificity. J Mol BioI 290: 983-996.

Stitt M, Krapp A. (1999). The interaction between elevated carbon dioxide and nitrogen nutrition: the

physiological and molecular background. Plant, Cell and Environment 22, 583-621.

Sugiura M, Georgescu MN, Takahashi M.(2007) A nitrite transporter associated with nitrite uptake

by higher plant chloroplasts. Plant Cell Physiol. 48(7): 1022-35. Epub 2007 Jun 12.

Sun Q, Emanuelsson 0 and van Wijk KJ (2004) Analysis of curated and predicted plastid

subproteomes of Arabidopsis. Subcellular compartmentalization leads to distinctive proteome

properties. Plant Physiol135: 723-734.

Suter M, von Ballmoos P, Kopriva S, Op den Camp R, Schaller J, Kuhlemeier C, Schurmann P,

Brunold C. (2000) Adenosine 5'-phosphosulfate sulfotransferase and adenosine 5'­

phosphosulfate reductase are identical enzymes. J BioI Chern 275: 930-936.

Suzuki JY and Bauer CEo (1995) Altered mono vinyl and divinyl protochlorophyllide pools in bchJ

mutants of Rhodobacter capsulatus. Possible monovinyl substrate discrimination of light­

independent protochlorophyllide reductase. J Bioi Chern. 270: 3732-3740.

Suzuki T, Masuda T, Inokuchi H, Shimada H, Ohta Hand Takamiya K. (2000) Overexpression,

Enzymatic properties and tissue localisation of a ferrochelatase of cucumber. Plant Cell

Physiol. 41: 192-199.

Sweetlove LJ, Heazlewood JL, Herald V, Holtzapffel R, Day DA, Leaver CJ and Millar AH.

(2002) The impact of oxidative stress on Arabidopsis mitochondria. Plant J. 2002 32: 891-

904.

Sylvie Ferrario-Mery; Marie-Helene Valadier, and Christine H. Foyer (1998) Overexpression of

Nitrate Reductase in Tobacco Delays Drought-Induced Decreases in Nitrate Reductase

Activity and mRNA. Plant Physiol. May; 117(1): 293-302.

Takahashi H, Yamazaki M, Sasakura N,Watanabe A, Leustek T, et al. (1997) Regulation of sulfur

assimilation in higher plants: A sulfate transporter induced in sulfate-starved roots plays a

central role in Arabidopsis thaliana. Proc. Natl. Acad. Sci. USA 94:11102-7.

200

<}?,§ferences

Takahashi H, Yamazaki M, Sasakura N,Watanabe A, Leustek T, et al. (1997) Regulation of sulfur

assimilation in higher plants: A sulfate transporter induced in sulfate-starved roots plays a

central role in Arabidopsis thaliana. Proc. Natl. Acad. Sci. USA 94: 11102-7.

Takahashi H,Watanabe-Takahashi A, Smith FW, Blake-Kalff M, Hawkesford MJ, Saito K.

(2000) The roles of three functional sulphate transporters involved in uptake and

translocation of sulphate in Arabidopsis thaliana. Plant J. 23: 171-82.

Takahashi M, Sasaki Y, Ida S, Morikawa H. (2001) Nitrite reductase gene emichment improves

assimilation of NO (2) in Arabidopsis. Plant Physiol. 2001 Jun; 126(2):731-41.

Takahashi, Y. et al. (1986) Formation of the iron-sulfur cluster of ferredoxin in isolated chloroplasts.

Proc. Natl. Acad. Sci. U. S. A. 83,2434-2437.

Takahashi, Y. et al. (1986) Formation of the iron-sulfur cluster of ferredoxin in isolated chloroplasts.

Proc. Natl. Acad. Sci. U. S. A. 83,2434-2437.

Takahashi, Y. et al. (1991) Formation of the Fe-S cluster of ferredoxin in lysed spinach chloroplasts.

Plant Physiol. 95, 97-103.

Takei K, Takahashi T, Sugiyama T, Yamaya T, Sakakibara H. (2002). Multiple routes

communicating nitrogen availability from roots to shoots: a signal transduction pathway

mediated by cytokinin. 1. Exp. Bot. 53:971-77.

Tanaka R, Oster U, Kruse E, Rudiger Wand Grimm B. (1999) Reduced activityof geranylgeranyl

reductase leads to loss of chlorophyll and tocopherol and to partially geranylgeranylated

chlorophyll in transgenic tobacco plants expressing antisense RNA for geranylgeranyl

reductase. Plant Physiol. 120: 695-704.

Tanaka T, Ida S, Irifune K, Oeda K, Morikawa H (1994) Nucleotide sequence of a gene for nitrite

reductase from Root-to-Shoot Transport of Sulfate in Arabidopsis. Evidence for the Role of

SULTR3;5 as a Component of Low-Affinity Sulfate Transport System in the Root

Vasculature Plant Physiol. 136: 4198-4204.

Taniguchi M, Kiba T, Sakakibara H, Ueguchi C, Mizuno T, Sugiyama T. 1998. Expression of

Arabidopsis response regulator homo logs is induced by cytokinins and nitrate. FEBS Lett.

429:259-62.

Tatsuhiko Kataoka, Naomi Hayashi, Tomoyuki Yamaya, and Hideki Takahashi (2004) Root-to­

Shoot Transport of Sulfate in Arabidopsis. Evidence for the Role of SULTR3;5 as a

Component of Low-Affinity Sulfate Transport System in the Root Vasculature Plant Physiol.

136: 4198-4204.

Tempest DW, Meers JL, Brown CM (1970) Synthesis of glutamate in Aerobacter aerogenes by a

hitherto unknown route. Biochem. J. 117: 405-407.

201

IJ?f:ferences

Temple SJ, Knight TJ, Unkefer PJ, Sengupta-Gopalan S. (1993) Modulation of glutamine

synthetase gene expression in tobacco by the introduction of an alfalfa glutamine synthetase

gene in sense and antisense orientation: molecular and biochemical analysis. Mol Gen Genet

236: 315-325.

Temple SJ, Vance CP, Gantt JS (1998). Glutamate synthase and nitrogen assimilation. Trends Plant

Sci 3: 51-56.

Terce-Laforgue T, Mack G, Hirel B (2004). New insights towards the function of glutamate

dehydrogenase revealed during source-sink transition of tobacco (N. tabacum) plants grown

under different nitrogen regimes.Physiol. Plant., 120: 220-228.

Tewari AK and Tripathy Be. (1998) Temperature-stress-induced impairment of chlorophyll

biosynthetic reactions in cucumber and wheat. Plant Physiol. 117: 851-858.

Thomas D, Kuras L, Barbey R, Cherest H, Blaiseau P, Surdin-Kerjan Y.( 1995) Met30p, a yeast

transcriptional inhibitor that responds to S-adenosylmethionine, is an essential protein with

WD40 repeats. Mol. Cell. BioI. 15:6526-34.

Tomitani A, Okada K, Miyashita H, Matthijs HC, Ohno T and Tanaka A. (1999) Chlorophyll b

and phycobilins in the common ancestor of cyanobacteria and chloroplasts. Nature. 400: 159-

62.

Towbin H, Staehelin T and Gordon J. (1979) Electrophoretic transfer of proteins from

polyacrylamide gels to nitrocellulose sheets: Procedure and some applications. Proc. Natl.

Acad. Sci. USA. 76: 4350-4354.

Townsend DM, Tew KD, Tapiero H. (2004) Sulfur containing amino acids and human disease.

Biomed Pharmacother; 58:47-55.

Tranbarger, T.J. et al. (2003) Transcription factor genes with expression correlated to nitrate-related

root plasticity of Arabidopsis thaliana. Plant Cell Environ. 26,459-469.

Trebst A. (2003) Function of beta-carotene and tocopherol in photo system II. Z Naturforsch. 58: 609- .

620.

Tripathy BC and Mohanty P. (1980) Zinc-inhibited electron transport of photosynthesis in isolated

barley chloroplasts. Plant Physiol. 66: 1174-1178.

Tripathy BC and Rebeiz CA. (1985) Chloroplast biogenesis: quantitative determination of mono vinyl

and divinyl Mg-protoporphyrins and protochlorophyll(ides) by spectrofiuorometry. Anal

Biochem. 149:43-61.

202

rx§jerences

Tripathy BC and Rebeiz CA. (1986) Chloroplast biogenesis. Demonstration of the monovinyl and

divinyl monocarboxylic routes of chlorophyll biosynthesis in higher plants. J Bioi Chern. 261:

13556-13564.

Tripathy BC and Rebeiz CA. (1988) Chloroplast biogenesis 60: Conversion of divinyl

protochlorophyllide to monovinyl protochlorophyllide in green (ing) barley, a dark

monovinyi/light divinyl plant species. Plant Physiol. 87: 89-94.

Tripathy BC, Chakraborty N. (1991) 5-Aminolevulinic acid induced photodynamic damage of the

photosynthetic electron transport chain of cucumber (Cucurnis sativus L) Cotyledons. Plant

Physiol; 96:761-7.

Tripathy BC, et al. (2007) Impairment of the photosyntheticparatus by oxidative stress induced by

photosensitization reaction of protoporphyrin IX. Biochim Biophys Acta; 1767:860-8.

Tripathy BC, Sherameti I, Oelmiiller R. (2010) Siroheme: An essential component for life on earth.

Plant Signal Behav. 5(1). [Epub ahead of print]

Tripathy Be. (1994) 5-Aminolevulinic acid-induced photodynamic damage to cucumber (Cucurnis

sativus L.) plants mediated by singlet oxygen In Porphyric Pesticides: Chemistry, Toxicology

and Pharmaceutical Applications (S. O. Duke and C. A. Rebeiz, eds.) American Chemical

Society, Washington D. C. pp 65-80.

Tsai S, Bishop DF and Desnick RJ. (1987) Purification and properties of uroporphyrinogen III

synthase from human erythrocytes. J Bioi Chern. 262: 1268-1273.

Vadassery J, et al. (2009) Monodehydroascorbate reductase 2 and dehydroascorbate reductase 5 are

crucial for the mutualistic interaction between Piriforrnospora indica and Arabidopsis. J Plant

Physiol; Epub ahead of publication.

Vance, c.P. et al. (2003) Phosphorus acquisition and use: critical adaptations by plants for securing a

non-renewable resource. Plant Physiol. 157,423-447.

Vincent R, Fraisier V, Chaillou S, Limami MA, Deleens E, Phillipson B, Douat C, Boutin JP,

Hirel B. (1997) Overexpression of a soybean gene encoding cytosolic glutamine synthetase in

shoots of transgenic Lotus comiculatus L. plants triggers changes in ammonium assimilation

and plant development. Planta. 1997;201(4):424-33.

Vincentz M, Caboche M. (1991) Constitutive expression of nitrate reductase allows normal growth

and development ofNicotiana plumbaginifolia plants. EMBO J. 10(5): 1 027 -35.

Vinella D, et al. (2009) Iron-sulfur (Fe/S) protein biogenesis: phylogenomic and genetic studies of A­

type carriers. PLoS Genet; 1000497.

203

~ferences

von Wiren, N., Gazzarrini, S. and Frommer, W.B. (1997) Regulation of mineral nitrogen uptake in

plants, Plant Soil 196, 191-199 Glass, A.D.,

Wada K, Onda M, Matsubara H (1986) Ferredoxin isolated from plant non-photosynthetic tissues:

purification and characterization. Plant Cell Physiol27: 407-415

Walker CJ and Weinstein JD. (1994) The magnesium-insertion step of chlorophyll biosynthesis is a

two-stage reaction. Biochem J. 299: 277-284.

Walker CJ and Willows RD. (1997) Mechanism and Regulation of Mg-chelatase. Biochem J. 327:

321-333.

Walker CJ, Castelfranco PA and Whyte BJ. (1991) Synthesis of divinyl protochlorophyllide.

Enzymological properties of the Mg-protoporphyrin IX monomethyl ester oxidative cyclase

system. Biochem. J. 276: 691--697.

Walker CJ, Mansfield KE, Smith KM and Castelfranco PA. (1989) Incorporation of atmospheric

oxygen into the carbonyl functionality of the protochlorophyllide isocyclic ring. Biochem. J.

257: 599--602.

Wang, R. et al. (2003) Microarray analysis of the nitrate response in Arabidopsis roots and shoots

reveals over 1,000 rapidly responding genes and new linkages to glucose, trehalose-6-

phosphate, iron, and sulfate metabolism. Plant Physiol. 132,556-567.

Warren MJ, et al. (1994) Gene dissection demonstrates that the Escherichia coli cysG gene encodes a

multifunctional protein. Biochem J; 302:837-44.

Warren MJ, Roessner CA, Santander PJ, Scott AI. (1990) The Escherichia coli cysG gene encodes

S-adenosylmethionine-dependent uroporphyrinogen III methylase. Biochem J; 265:725-9.

Warren MJ, Scott AI. (1990) Tetrapyrrole assembly and modification into the ligands of biologically

functional cofactors. Trends Biochem Sci; 15:486- 9l.

Warren MJ, Stolowich NJ, Santander PJ, Roessner CA, Sow a BA, Scott AI.(1990) Enzymatic

synthesis of dihydrosirohydrochlorin (precorrin-2) and of a novel pyrrocorphin by

uroporphyrinogen III methylase. FEBS Lett; 261 :76-80.

Waters MT, Langdale JA (2009). The making ofa chloroplast. EMBO J. 7;28(19):2861-73.

Wawrzynska A, Lewandowska M, Hawkesford MJ, Sirko A (2005) Using a suppression subtractive

library-based approach to identify tobacco genes regulated in response to short-term sulphur

deficit. J Exp Bot 56: 1575-1590.

Weber M, Suter M, Brunold C, Kopriva S. (2000) Sulfate assimilation in higher plants

characterization of a stable intermediate in the adenosine 5'-phosphosulfate reductase reaction.

Eur J Biochem 267: 3647-3653.

204

CRtferences

Weinstein JD and Beale SI. (1985) RNA is required for enzymatic conversion of glutamate to delta­

aminolevulinate by extracts of Chi orella vulgaris. Arch Biochem Biophys. 239: 87-93.

Welburn AR and Lichanthaler H. (1984) Formulae and program to determine total cartenoids and

Chi a and b of leaf extracts in different solvents. In Advances in photosynthesis research

(Sybesma, C. ed), Martinus NijofflDr. W.Junk Publishers, The HaguelBostoni Lancaster

Vol.I1: pp 9-12.

Wenpei, Su, S C Huber, and N M Crawford (1996). Identification in vitro of a post-translational

regulatory site in the hinge 1 region of Arabidopsis nitrate reductase. Plant Cell. March; 8(3):

519-527.

White, P.J. et al. (2005) Genetic modifications to improve phosphorus acquisition by roots, 568. In

Proceedings of the International Fertiliser Society. IFS, York, UK.

Whyte BJ and Castelfranco PA. (1993) Further observations on the Mg-protoporphryin IX

monomethyl ester (oxidative) cyclase system. Biochem. J. 290: 355-359.

Wilks HM and Timko MP. (1995) A light-dependent complementation system for analysis of

NADPH: protochlorophyllide oxidoreductase: identification and mutagenesis of two

conserved residues that are essential for enzyme activity. Proc Natl Acad Sci USA. 92: 724-

728.

Willows RD, Gibson LC, Kanangara CG, Hunter CN and von Wettstein D. (1996) Three separate

proteins constitute the magnesium chelatase of Rhodobacter sphaeroides. Eur J Biochem. 235:

438-443.

Wiren N, Gazzarrini S, Gojon A, Frommer WB (2000) The molecular physiology of ammonium

uptake and retrieval. CUIT Opin Plant Bioi 3: 254-261.

Witty M, Jones RM, Robb MS, Jordan PM and Smith AG. (1996) Subcellular location of the

tetrapyrrole synthesis enzyme porphobilinogen deaminase in higher plants: an immunological

investigation. Planta. 199: 557-564.

Xiang C, Oliver D.( 1998) Glutatione metabolic genes cordinately respond to heavy metals and

jasmoic acid in Arabidopsis. Plant Celli 0: 1539-50.

Yamane Y, Kashino Y, Koioke H, Satoh K (1997) Increase of the fluorescence FO level and

reversible inhibition of photosystem II reaction center by high-temperature treatments in

higher plants. Photosynth Res 52: 57-64.

Yamaya, T., Obara, M., Nakajima, H., Sasaki, S., Hayakawa, T. and Sato, T. (2002), Genetic

manipulation and quantitative-trait loci mapping for nitrogen recycling in rice. J. Exp. Bot, 53,

917-925.

205

~ferences

Ye, H. et al. (2005) The chloroplast NifS-like protein of Arabidopsis thaliana is required for iron­

sulfur cluster formation in ferredoxin. Planta 220, 602-608.

Yonekura-Sakakibara K, Onda Y, Ashikari T, Tanaka Y, Kusumi T, Hase T. (2000) Analysis of

reductant supply systems for ferredoxin-dependent sulfite reductase in photosynthetic and

nonphotosynthetic organs of maize. Plant Physiol122: 887-894.

Yoneyama T, Sasakawa H (1979a) Transformation of atmospheric N02 absorbed in spinach leaves.

Plant Cell Physiol 20: 263-266.

Yoneyama T, Sasakawa H, Ishizuka S, Totsuka T (1979b) Absorption of atmospheric N02 by

plants and soils. Soil Sci Plant Nutr 25: 267-275.

Yoon HS, Hackett JD, Ciniglia C, Pinto G, Bhattacharya D (2004). A molecular timeline for the

origin of photosynthetic eukaryotes. Mol BioI Evol 21: 809-818.

Yoshimoto N, Takahashi H, Smi~h FW, Yamaya T, Saito K (2002) Two distinct high-affinity

sulfate transporters with different inducibilities mediate uptake of sulfate in Arabidopsis roots.

Plant J 29: 465-473.

Yoshimoto T and Matsunakas. (1982) The mode of action of diphenyl ether herbicides: The

scavenging of active oxygen is not inhibited by diphenyl ethers. In: "Abstracts of the 5th

International Congress of Pesticide chemistry", Vol. 5, p.62.

Zhang H, Forde BG (2000) Regulation of Arabidopsis root development by nitrate availability. J Exp

Bot 51: 51-59.

Zhang H, Jennings A, Barlow PW, Forde BG (1999) Dual pathways for regulation of root branching

by nitrate. Proc Nat! Acad Sci USA 96: 6529-653.

Zhang HM, Forde BG (1998) An Arabidopsis MADS box gene that controls nutrient-induced

changes in root architecture. Science 279: 407-409 Zhang, H. and Forde, B. G., An

Arabidopsis MADS box gene that controls nutrient-induced changes in root architecture.

Science, 1998,279,407-409.

Zhang, H. and Forde, B.G. (1998) An Arabidopsis MADS box gene that controls nutrient-induced

changes in root architecture. Science 279, 407-409.

Zhang, H. et al. (1999) Dual pathways for regulation of root branching by nitrate. Proc. Natl. Acad.

Sci. U. S. A. 96, 6529-6534.

Zhao FJ, Fortune S, Barbosa VL, McGrath SP, Stobart R, Bilsborrow PE, Booth EJ, Brown A,

Robson P (2006) Effects of sulphur on yield and malting quality of barley. J Cereal Sci 43:

369-377.

206

CRsferences

Zhao FJ, Hawkesford MJ and McGrath SP (1999) Sulphur assimilation and effects on yield and

qualitiy of wheat. 1 Cereal Sci 30: 1-17.

Zhao FJ, Hawkesford MJ, McGrath SP (1999) Sulphur assimilation and effects on yield and quality

of wheat. J Cereal Sci 30: 1-17.

Zhao MG, Chen L, Zhang LL, Zhang WHo (2009) Nitric reductase-dependent nitric oxide

production is involved in cold acclimation and freezing tolerance in Arabidopsis. Plant

Physiol. Oct;151(2):755-67.

Zheng, L. et al. (1998) Assembly of iron-sulfur clusters - identification of an iscSUA-hscBA-fdx

gene cluster from Azotobacter vinelandii. 1. BioI. Chern. 273, 13264-13272.

Zheng, L. et al. (1998) Assembly of iron-sulfur clusters - identification of an iscSUA-hscBA-fdx

gene cluster from Azotobacter vinelandii. 1. BioI. Chern. 273, 13264-13272

Zhuo D, OkamotoM, Vidmar JJ, Glass AD (1999) Regulation of a putative high-affinity nitrate

transporter (Nrt2; 1 At) in roots of Arabidopsis thaliana. Plant 1 17: 563-568.

207