Front MatterSource: Proceedings of the National Academy of Sciences of the United States of America,Vol. 94, No. 22 (Oct. 28, 1997), pp. i-viiPublished by: National Academy of SciencesStable URL: http://www.jstor.org/stable/42960 .
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PROCEEDINGS
OF THE
NATIONAL ACADEMY OF SCIENCES
OF THE UNITED STATES OF AMERICA
October 28, 1997
Volume 94 / Number 22
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PROCEEDINGS OF THE
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PROCEEDINGS
OF THE
NATIONAL ACADEMY OF SCIENCES
OF THE UNITED STATES OF AMERICA
October 28, 1997 Volume 94, Number 22 pp. 11753-12242
Table of Contents
Perspectives Inaugural Articles
Fluorescence correlation spectroscopy: 11753-11757 Glu-tRNAGln amidotransferase: A novel 11819-11826 Diagnostics for sparse molecules heterotrimeric enzyme required for correct
Sudipta Maiti, Ulrich Haupts, decoding of glutamine codons and Watt W. Webb during translation
Alan W. Curnow, Kwang-won Hong, Robert Yuan, Sung-il Kim, Orlando Martins, Wade Winkler,
IKB kinase: Beginning, not the end 11758-11760 T M H Inder M. Verma and Jennifer Stevenson
T
Intracerebral tumor-associated hemorrhage caused by 12081-12087 overexpression of the vascular endothelial growth
Commentaries factor isoforms VEGF121 and VEGF165 but not VEGF189
Once there were twenty 11761-11763 Shi-Yuan Cheng, Motoo Nagane, H.-J. Su Huang,
Uttam L. RajBhandary and Webster K. Cavenee
Recombinational crossroads: Eukaryotic enzymes 11764-11766 Gene-based approach to human gene- 12117-12121 and the limits of bacterial precedents phenotype correlations
Michael M. Cox Thaddeus P. Dryja
Phosphotyrosine signaling and the single 11767-11769 Defective y-aminobutyric acid type B 12210-12217 cell:metazoan boundary
~~~~~~~~receptor-activated inwardly rectifying James B. Darnell, Jr. ~~~~~~K~ currents in cerebellar granule
cells isolated from weaver and Twist and shout (and pull): Molecular chiropractors 11770-11772 Girk2 null mutant mice undo DNA Paul A. Slesinger, Markus Stoffel, Yuh Nung Jan,
John F. Marko and Lily Y. Jan
.i.i
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Contents
Physical Sciences
CHEMISTRY
On roads not taken in the evolution of protein 11773-11776 catalysts: Antibody steroid isomerases that use an enamine mechanism
Chao-Hsiung Lin, Timothy Z. Hoffman, Peter Wirsching, Carlos F. Barbas III, Kim D. Janda, and Richard A. Lerner
Making chemistry selectable by linking it to infectivity 11777-11782 Changshou Gao, Chao-Hsiung Lin, Chih-Hung L. Lo, Shenlan Mao, Peter Wirsching, Richard A. Lerner, and Kim D. Janda
Electrophilic nitration of alkanes with nitronium 11783-11785 hexaf luorophosphate
George A. Olah, Pichika Ramaiah, and G. K. Surya Prakash
Biological Sciences
BIOCHEMISTRY
Protein-protein interactions among the 11786-11791 Aux/IAA proteins
Jungmook Kim, Klaus Harter, and Athanasios Theologis
Characterization of recombinant phytochrome from 11792-11797 the cyanobacterium Synechocystis
Tilman Lamparter, Franz Mittmann, Wolfgang Gartner, Thomas B6rner, Elmar Hartmann, and Jon Hughes
Prp43: An RNA helicase-like factor involved in 11798-11802 spliceosome disassembly
Jaime E. Arenas and John N. Abelson
Cloning of mDEAH9, a putative RNA helicase and 11803-11807 mammalian homologue of Saccharomyces cerevisiae splicing factor Prp43
Sherry Gee, Sharon Wald Krauss, Estelle Miller, Kazuko Aoyagi, Jaime Arenas, and John G. Conboy
Structural evidence for a second sialic acid binding 11808-11812 site in avian influenza virus neuraminidases
Joseph N. Varghese, Peter M. Colman, Albertus van Donkelaar, Tony J. Blick, Anjali Sahasrabudhe, and Jennifer L. McKimm-Breschkin
The crystal structure of human interferon ,3 at 11813-11818 2.2-A resolution
Michael Karpusas, Matthias Nolte, Christopher B. Benton, Werner Meier, William N. Lipscomb, and Susan Goelz
Glu-tRNAGIn amidotransferase: A novel 11819-11826 heterotrimeric enzyme required for correct decoding of glutamine codons during translation
Alan W. Curnow, Kwang-won Hong, Robert Yuan, Sung-il Kim, Orlando Martins, Wade Winkler, Tina M. Henkin, and Dieter Soll
Cloning of the cDNA for the TATA-binding 11827-11832 protein-associated factor,1170 subunit of transcription factor B-TFIID reveals homology to global transcription regulators in yeast and Drosophila
Jan A. van der Knaap, Jan Willem Borst, Peter C. van der Vliet, Reiner Gentz, and H. Th. Marc Timmers
Synthesis and screening of small molecule libraries 11833-11838 active in binding to DNA
Gerald W. Shipps, Jr., Kent E. Pryor, Jun Xian, David A. Skyler, Eric H. Davidson, and Julius Rebek, Jr.
The amino-terminal region of Tyk2 sustains the level 11839-11844 of interferon (x receptor 1, a component of the interferon x/,3 receptor
M. Cristina Gauzzi, Giovanna Barbieri, Marc F. Richter, Gilles Uz6, Leona Ling, Marc Fellous, and Sandra Pellegrini
Structure of the thrombin complex with triabin, a 11845-11850 lipocalin-like exosite-binding inhibitor derived from a triatomine bug
Pablo Fuentes-Prior, Christiane Noeske-Jungblut, Peter Donner, Wolf-Dieter Schleuning, Robert Huber, and Wolfram Bode
Characterization of a genetically engineered 11851-11856 inactivation-resistant coagulation factor VIlla
Steven W. Pipe and Randal J. Kaufman
Respiratory chain is required to maintain oxidized 11857-11862 states of the DsbA-DsbB disulfide bond formation system in aerobically growing Escherichia coli cells
Taeko Kobayashi, Satoshi Kishigami, Michio Sone, Hachiro Inokuchi, Tatsushi Mogi, and Koreaki Ito
RecA tests homology at both pairing and 11863-11868 strand exchange
L. Rochelle Bazemore, Ewa Folta-Stogniew, Masayuki Takahashi, and Charles M. Radding
Extensive purification of a putative RNA 11869-11874 polymerase I holoenzyme from plants that accurately initiates rRNA gene transcription in vitro
Julio Saez-Vasquez and Craig S. Pikaard
Growth and viability of macrophages continuously 11875-11880 stimulated to produce nitric oxide
John C. Zhuang and Gerald N. Wogan
Conformation of coenzyme pyrroloquinoline quinone 11881-11886 and role of Ca2+ in the catalytic mechanism of quinoprotein methanol dehydrogenase
Ya-Jun Zheng and Thomas C. Bruice
Molding a peptide into an RNA site by in vivo 11887-11892 peptide evolution
Kazuo Harada, Shelley S. Martin, Ruoying Tan, and Alan D. Frankel
Participation of the nuclear cap binding complex in 11893-11898 pre-mRNA 3' processing
Sean M. Flaherty, Puni Fortes, Elisa Izaurralde, lain W. Mattaj, and Gregory M. Gilmartin
iv
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Contents
Both N-terminal myosin-binding and C-terminal 11899-11904 actin-binding sites on smooth muscle caldesmon are required for caldesmon-mediated inhibition of actin filament velocity
Ze Wang, He Jiang, Zhi-Qiong Yang, and Samuel Chacko
BIOPHYSICS
Molecular switch in signal transduction: Reaction 11905-11910 paths of the conformational changes in ras p21
Jianpeng Ma and Martin Karplus
A structural census of the current population 11911-11916 of protein sequences
Mark Gerstein and Michael Levitt
Preferential exclusion of sucrose from recombinant 11917-11922 interleukin-1 receptor antagonist: Role in restricted conformational mobility and compaction of native state
Brent S. Kendrick, Byeong S. Chang, Tsutomu Arakawa, Brian Peterson, Theodore W. Randolph, Mark C. Manning, and John F. Carpenter
Effects of extracellular Ca2+ concentration on 11923-11928 hair-bundle stiffness and gating-spring integrity in hair cells
Robert E. Marquis and A. J. Hudspeth
Assigning folds to the proteins encoded by the 11929-11934 genome of Mycoplasma genitalium
Daniel Fischer and David Eisenberg
Mechanical separation of the complementary strands 11935-11940 of DNA
B. Essevaz-Roulet, U. Bockelmann, and F. Heslot
CELL BIOLOGY
Human deoxycytidine kinase is located in the 11941-11945 cell nucleus
Magnus Johansson, Sophia Brismar, and Anna Karlsson
Control of membrane phosphatidylcholine 11946-11950 biosynthesis by diacylglycerol levels in neuronal cells undergoing neurite outgrowth
Wataru Araki and Richard J. Wurtman
Activation of distinct caspase-like proteases by Fas 11951-11956 and reaper in Drosophila cells
Toru Kondo, Takakazu Yokokura, and Shigekazu Nagata
Proteinase inhibitors I and II from potatoes 11957-11962 specifically block UV-induced activator protein-1 activation through a pathway that is independent of extracellular signal-regulated kinases, c-Jun N-terminal kinases, and P38 kinase
Chuanshu Huang, Wei-Ya Ma, Clarence A. Ryan, and Zigang Dong
Conversion of cysteine to formylglycine: A protein 11963-11968 modification in the endoplasmic reticulum
Thomas Dierks, Bernhard Schmidt, and Kurt von Figura
Abnormalities of pancreatic islets by targeted 11969-11973 expression of a dominant-negative KATP channel
Takashi Miki, Fumi Tashiro, Toshihiko Iwanaga, Kazuaki Nagashima, Hideyuki Yoshitomi, Hiroyuki Aihara, Yoshio Nitta, Tohru Gonoi, Nobuya Inagaki, Jun-ichi Miyazaki, and Susumu Seino
DEVELOPMENTAL BIOLOGY
Mouse Eya genes are expressed during limb tendon 11974-11979 development and encode a transcriptional activation function
Pin-Xian Xu, Jane Cheng, Jonathan A. Epstein, and Richard L. Maas
Xenopus Zic3, a primary regulator both in neural 11980-11985 and neural crest development
Katsunori Nakata, Takeharu Nagai, Jun Aruga, and Katsuhiko Mikoshiba
EVOLUTION
Identification of active sites in amidase: Evolutionary 11986-11991 relationship between amide bond- and peptide bond-cleaving enzymes
Michihiko Kobayashi, Yoshie Fujiwara, Masahiko Goda, Hidenobu Komeda, and Sakayu Shimizu
Convergent evolution of apolipoprotein(a) in 11992-11997 primates and hedgehog
Richard M. Lawn, Karen Schwartz, and Laszlo Patthy
Phalangeal curvature and positional behavior in 11998-12001 extinct sloth lemurs (Primates, Palaeopropithecidae)
William L. Jungers, Laurie R. Godfrey, Elwyn L. Simons, and Prithijit S. Chatrath
Evolution of gilled mushrooms and puffballs inferred 12002-12006 from ribosomal DNA sequences
David S. Hibbett, Elizabeth M. Pine, Ewald Langer, Gitta Langer, and Michael J. Donoghue
Origin and evolution of the slime molds (Mycetozoa) 12007-12012 Sandra L. Baldauf and W. Ford Doolittle
GENETICS
Endosperm balance number manipulation for 12013-12017 direct in vivo germplasm introgression to potato from a sexually isolated relative (Solanum commersonii Dun.)
Domenico Carputo, Amalia Barone, Teodoro Cardi, Angela Sebastiano, Luigi Frusciante, and Stanley J. Peloquin
Highly conservative reciprocal translocations formed 12018-12023 by apparent joining of exchanged DNA double- strand break ends
Peng Wang, Rui-Hua Zhou, Ying Zou, Colleen K. Jackson-Cook, and Lawrence F. Povirk
DHR3, an ecdysone-inducible early-late gene 12024-12029 encoding a Drosophila nuclear receptor, is required for embryogenesis
Ginger B. Carney, Andrew A. Wade, Rajat Sapra, Elliott S. Goldstein, and Michael Bender
v
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Contents
A gene spans the pseudoautosomal boundary in mice 12030-12035 Steve Palmer, Jo Perry, David Kipling, and Alan Ashworth
Incomplete penetrance of familial retinoblastoma 12036-12040 linked to germ-line mutations that result in partial loss of RB function
Gregory A. Otterson, Wei-dong Chen, Amy B. Coxon, Samir N. Khleif, and Frederic J. Kaye
IMMUNOLOGY
Epstein-Barr virus-induced gene 3 and the p35 12041-12046 subunit of interleukin 12 form a novel heterodimeric hematopoietin
Odile Devergne, Mark Birkenbach, and Elliott Kieff
Interaction of pigeon cytochrome c-(43-58) peptide 12047-12052 analogs with either T cell antigen receptor or I-Ab molecule
Yasushi Itoh, Kiichi Kajino, Kazumasa Ogasawara, Akio Takahashi, Ken-ichi Namba, Izumi Negishi, Naoto Matsuki, Kazuya Iwabuchi, Mitsuaki Kakinuma, Robert A. Good, and Kazunori Ono6
Severe reduction in leukocyte adhesion and monocyte 12053-12058 extravasation in mice deficient in CC chemokine receptor 2
William A. Kuziel, Sharon J. Morgan, Tracey C. Dawson, Stephanie Griffin, Oliver Smithies, Klaus Ley, and Nobuyo Maeda
Targeting HIV proteins to the major 12059-12064 histocompatibility complex class I processing pathway with a novel gpl20-anthrax toxin fusion protein
Theresa J. Goletz, Kurt R. Klimpel, Naveen Arora, Stephen H. Leppla, Jerry M. Keith, and Jay A. Berzofsky
Prevention of development of autoimmune disease in 12065-12069 BXSB mice by mixed bone marrow transplantation
Bing-Yan Wang, Cherry, Nagwa S. El-Badri, and Robert A. Good
MEDICAL SCIENCES
Posttranslational regulation of cyclin Dl by retinoic 12070-12074 acid: A chemoprevention mechanism
John Langenfeld, Hiroaki Kiyokawa, David Sekula, Jay Boyle, and Ethan Dmitrovsky
Cell cycle-dependent colocalization of BARD1 and 12075-12080 BRCA1 proteins in discrete nuclear domains
Ying Jin, Xie L. Xu, Meng-Chun W. Yang, Fanglin Wei, Teck-Choon Ayi, Anne M. Bowcock, and Richard Baer
Intracerebral tumor-associated hemorrhage caused by 12081-12087 overexpression of the vascular endothelial growth factor isoforms VEGF121 and VEGF165 but not VEGF189
Shi-Yuan Cheng, Motoo Nagane, H.-J. Su Huang, and Webster K. Cavenee
Cystic fibrosis transmembrane conductance regulator 12088-12093 is an epithelial cell receptor for clearance of Pseudomonas aeruginosa from the lung
Gerald B. Pier, Martha Grout, and Tanweer S. Zaidi
Selective induction of p5n3 and chemosensitivity in 12094-12099 RB-deficient cells by ElA mutants unable to bind the RB-related proteins
Andrew V. Samuelson and Scott W. Lowe
Restoration of f3-adrenergic signaling in failing 12100-12105 cardiac ventricular myocytes via adenoviral-mediated gene transfer
Shahab A. Akhter, Christine A. Skaer, Alan P. Kypson, Patricia H. McDonald, Karsten C. Peppel, Donald D. Glower, Robert J. Lefkowitz, and Walter J. Koch
Evaluating treatment protocols to 12106-12111 prevent antibiotic resistance
Sebastian Bonhoeffer, Marc Lipsitch, and Bruce R. Levin
Mechanical stretch induces vascular permeability 12112-12116 factor in human mesangial cells: Mechanisms of signal transduction
Gabriella Gruden, Stephen Thomas, Davina Burt, Stephen Lane, Gary Chusney, Steven Sacks, and GianCarlo Viberti
Gene-based approach to human gene- 12117-12121 phenotype correlations
Thaddeus P. Dryja
Alternative genetic pathways in 12122-12127 colorectal carcinogenesis
Sylviane Olschwang, Richard Hamelin, Pierre Laurent-Puig, Ben6dicte Thuille, Yann De Rycke, You-Jun Li, Frangoise Muzeau, Jacques Girodet, R6my-Jacques Salmon, and Gilles Thomas
Gilbert syndrome and glucose-6-phosphate 12128-12132 dehydrogenase deficiency: A dose-dependent genetic interaction crucial to neonatal hyperbilirubinemia
Michael Kaplan, Paul Renbaum, Ephrat Levy-Lahad, Cathy Hammerman, Amnon Lahad, and Ernest Beutler
Prolonged production of NADPH oxidase-corrected 12133-12138 granulocytes after gene therapy of chronic granulomatous disease
Harry L. Malech, Phillip B. Maples, Narda Whiting-Theobald, Gilda F. Linton, Sudhir Sekhsaria, Sarah J. Vowells, Fei Li, Judi A. Miller, Ellen DeCarlo, Steven M. Holland, Susan F. Leitman, Charles S. Carter, Robert E. Butz, Elizabeth J. Read, Thomas A. Fleisher, Richard D. Schneiderman, Dennis E. Van Epps, S. Kaye Spratt, Christopher A. Maack, Joseph A. Rokovich, Lawrence K. Cohen, and John I. Gallin
MICROBIOLOGY
Cloning and characterization of the Flavobacterium 12139-12144 johnsoniae (Cytophaga johnsonae) gliding motility gene, g1dA
Sarika Agarwal, David W. Hunnicutt, and Mark J. McBride
Probing the assembly of transcription initiation 12145-12150 complexes through changes in o-N protease sensitivity
Paul Casaz and Martin Buck
NEUROBIOLOGY
Operative GABAergic inhibition in hippocampal CAl 12151-12156 pyramidal neurons in experimental epilepsy
M. Esclapez, J. C. Hirsch, R. Khazipov, Y. Ben-Ani, and C. Bernard
vi
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Contents
Loss of haloperidol induced gene expression and 12157-12161 catalepsy in protein kinase A-deficient mice
Monique R. Adams, Eugene P. Brandon, Elena H. Chartoff, Rejean L. Idzerda, Daniel M. Dorsa, and G. Stanley McKnight
The Caenorhabditis elegans seven-transmembrane 12162-12167 protein ODR-10 functions as an odorant receptor in mammalian cells
Yinong Zhang, Joseph H. Chou, Jonathan Bradley, Cornelia I. Bargmann, and Kai Zinn
Synapsin I interacts with c-Src and stimulates its 12168-12173 tyrosine kinase activity
Franco Onofri, Silvia Giovedi, Paola Vaccaro, Andrew J. Czernik, Flavia Valtorta, Pietro De Camilli, Paul Greengard, and Fabio Benfenati
Response-reinforcement learning is dependent on 12174-12179 N-methyl-D-aspartate receptor activation in the nucleus accumbens core
Ann E. Kelley, Stephanie L. Smith-Roe, and Matthew R. Holahan
The interaction between cytoplasmic dynein and 12180-12185 dynactin is required for fast axonal transport
Clare M. Waterman-Storer, Sher B. Karki, Sergei A. Kuznetsov, Joel S. Tabb, Dieter G. Weiss, George M. Langford, and Erika L. F. Holzbaur
Disruption of syntaxin-mediated protein interactions 12186-12191 blocks neurotransmitter secretion
V. O'Connor, C. Heuss, W. M. De Bello, T. Dresbach, M. P. Charlton, J. H. Hunt, L. L. Pellegrini, A. Hodel, M. M. Burger, H. Betz, G. J. Augustine, and T. Schafer
Protein kinase C as a signal for exocytosis 12192-12197 Julia Billiard, Duk-Su Koh, Donner F. Babcock, and Bertil Hille
Recurrent excitatory postsynaptic potentials induced 12198-12203 by synchronized fast cortical oscillations
Miles A. Whittington, Roger D. Traub, Howard J. Faulkner, Ian M. Stanford, and John G. R. Jefferys
HOP-1, a Caenorhabditis elegans presenilin, appears to 12204-12209 be functionally redundant with SEL-12 presenilin and to facilitate LIN-12 and GLP-1 signaling
Xiajun Li and Iva Greenwald
Defective y-aminobutyric acid type B 12210-12217 receptor-activated inwardly rectifying K+ currents in cerebellar granule cells isolated from weaver and Girk2 null mutant mice
Paul A. Slesinger, Markus Stoffel, Yuh Nung Jan, and Lily Y. Jan
PHARMACOLOGY
Design of compounds that increase the absorption 12218-12223 of polar molecules
Caryn Lang Bowe, Leila Mokhtarzadeh, Pushpa Venkatesan, Suresh Babu, Helena R. Axelrod, Michael J. Sofia, Ramesh Kakarla, Tin Yau Chan, Jae Seung Kim, Hye J. Lee, Gordon L. Amidon, Sally Y. Choe, Suzanne Walker, and Daniel Kahne
PHYSIOLOGY
Muscarinic stimulation of synaptic activity by protein 12224-12229 kinase C is inhibited by adenosine in cultured hippocampal neurons
Alexandre Bouron and Harald Reuter
PLANT BIOLOGY
Two hemoglobin genes in Arabidopsis thaliana: The 12230-12234 evolutionary origins of leghemoglobins
Ben Trevaskis, Richard. A. Watts, Carol R. Andersson, Danny J. Llewellyn, Mark S. Hargrove, John S. Olson, Elizabeth S. Dennis, and W. James Peacock
Genetic control of abscisic acid biosynthesis in maize 12235-12240 Bao Cai Tan, Steven H. Schwartz, Jan A. D. Zeevaart, and Donald R. McCarty
CORRECTIONS
BIOCHEMISTRY Identification by mass spectrometry of the 12241 phosphorylated residue responsible for activation of the catalytic domain of myosin I heavy chain kinase, a member of the PAK/STE20 family
Joanna Szczepanowska, Xiaolong Zhang, Christopher J. Herring, Jun Qin, Edward D. Korn, and Hanna Brzeska
CELL BIOLOGY Subtraction hybridization identifies a transformation 12241 progression-associated gene PEG-3 with sequence homology to a growth arrest and DNA damage-inducible gene
Zao-Zhong Su, Yijie Shi, and Paul B. Fisher
NEUROBIOLOGY Carboxyfullerenes as neuroprotective agents 12241
Laura L. Dugan, Dorothy M. Turetsky, Cheng Du, Doug Lobner, Mark Wheeler, C. Robert Almli, Clifton K.-F. Shen, Tien-Yau Luh, Dennis W. Choi, and Tien-Sung Lin
Long-term potentiation involves increases in the 12241 probability of neurotransmitter release
Paul E. Schulz
AUTHOR INDEX ix-x
INFORMATION FOR AUTHORS xi-xiii
SIZING WORKSHEET xiv
SUBSCRIPTION FORM xv
COPYRIGHT ASSIGNMENT FORM xvi
CLASSIFIED ADVERTISEMENT xix
vii
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