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GBIF European Regional GBIF European Regional Nodes Meeting 2013Nodes Meeting 2013
Thematic Node Manager
Sónia DiasResearch Programme Officer
EURISCO Coordinator
Bioversity InternationalGBIF European Regional Nodes Meeting 2013.
The Finish Digitarium, 6 – 8 March, Joensuu, Finland
http:eurisco.ecpgr.orghttp:eurisco.ecpgr.org
• Providing technical support for the creation/development of National PGR Inventories
• Develop and maintain an European PGR Search Catalogue with passport data on ex situ collections maintained in Europe by:
having the possibility to frequently update the Catalogue from the National PGR Inventories
providing easy access to information on PGR maintained ex situ in Europe, thus facilitate locating and accessing it.
• Assisting countries in meeting national obligations and commitments to:
the ITPGRFA (namely Art. 5, 12, 13, 14, 16 and 17) the FAO (namely GPA Priority Activity 17)
the CBD (namely Art. 7; 9; 17) …, among others …
http://eurisco.ecpgr.org
http://eurisco.ecpgr.org
+ Cyprus+ Israel
Data quality controls and reporting
Facing the reality
http://eurisco.ecpgr.org
Data Data ManagementManagement
Data Data SharingSharing
Data Data AnalysisAnalysis
Data Data CaptureCapture
Quality and Quality
GISTaxonomy
2010
31%
35%
2012
2010
MLS registration in 2011
is 22.5% of the total
EURISCO accessions,
covering around 65% of
the species from Annex I
of the ITPGRFA
National Inventories National Inventories Genebanks Genebanks Country sourcesCountry sources Wild speciesWild speciesBreeding/research material Breeding/research material Traditional cultivars/landracesTraditional cultivars/landracesImproved cultivarsImproved cultivarsInternational Treaty (MLS) International Treaty (MLS) SpeciesSpecies GeneraGenera Geo-references, etcGeo-references, etc
Total 1,112,779 accessions Total 1,112,779 accessions
43 Countries43 Countries325325220220107,872 accessions107,872 accessions161,664 accessions161,664 accessions273,951 accessions273,951 accessions207,494 accessions207,494 accessions251,335 accessions251,335 accessions>35,200 >35,200 > 5,300 > 5,300
@Bioversity and satellite databases
CWR-PCWR-P
GENESYSGENESYSTrait IPTrait IP
EURISCOEURISCO
EUFGISEUFGIS
Germplasm databases
Pillars to information
Next…relevance to science!
Accessions Ex situ CWR In situ Landraces On farm Traits ontologies Genotype
And to policy: EU, CBD- Aichi Targets, ITPGRFA, Nagoya Protocol, GSPC, IPBES… also linking with other regional and interregional initiatives
+ Cyprus+ Israel
-Node niche- biodiversity monitoring / open data platform / science and
research services –PGR- CWR and LR-In situ and on farm inventories conservation
strategies-Development backend, infrastructure
- accommodating phenotypic, environmental, data- Ontologies driven- Enhanced quality control system and features- linkages with other data types- genomics…- …
-Outreach- Website, e-bulletin, support, helpdesk
-Training- Training on demand (opportunistic) -documentation
Vision: a Global Agrobiodiversity Information Facility
PGR Secure “Novel characterization of crop wild relative and landrace resources as a basis for improved crop breeding”
http://www.pgrsecure.org/
In situ and On farm
Work package 2: InformaticsLead partner: BIOVER.; all partners involved .
•To produce a web-based CWR and LR Trait Information Portal – TIP (Task 2.1)
(a)provide useful trait information (phenomics, genomics and transcriptomics data) on European CWR and LR diversity, particularly for the case study genera, Avena, Beta, Brassica and Medicago; (b) provide baseline biodiversity information on CWR and LR diversity and its conservation; (c)(c) establish links with related existing information systems regarding genomic characterization and ensure integration with other relevant plant genetic resources for food and…….
Objective
http://www.pgrsecure.bham.ac.uk/sites/default/files/documents/newsletters/CWR_Issue_8.pdf (page28)
TIP platform
Mong DBNeo4jOntologies – annotation, data collation….
Looking forward • Data quality, Data digitalization, Data analysis• Upload processes and system, Ontologies, Open data platform• Biodiversity monitoring, Contribute use cases • Science and research services• ABD knowledge base• ABD Informatics Consortium: standards, methodology and software for
ABD/PGR
• In Situ and on Farm CWR and LR Trait Information Portal-PGR Secure project (www.pgrsecure.org ) – High relevance for policy and science needs– Inventories – Checklist– Conservation strategies – Trait information
Milko SkoficMilko Skofic
Contributors
EURISCO Network National Focal Points
Thanks