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Subject: Molecular genetics
Period: 1 semester
Lectures/practical courses: 2 lectures per week
2 seminars/practical courses per week
Midterm tests: 3 self-control tests offered on the 5th, 10th and 14th week
Exam: written exam: end of the semester.
+ Bonus points: the bonus percentage based on the average result of the three mid-semester tests. Absence counts as 0%. + bonus points from 4 homeworks
Attendance Lectures not obligatory,
Practical courses, seminars obligatory
Tanulmányi felelős: Krisztina Szentesiné Szirák
Office hours: Monday, 10:30 – 12:30 (Dept. of Human Genetics,LSB 2nd
floor, 4th annex, 2.408. room
• homepage: http://www.genetics.dote.hu
• username: mbmsc (?)
• password: polimorphism (?)
For the signature in your lecture book:
• attend the classes (labs and seminars counted together)SIGN THE ATTENDANCE LIST– more than two absences: lab test (test from
the material of labs and seminars)– more than four absences: no signature
• write at least two of the self-control tests
Midterm tests• 3 self-control tests offered on the 5th, 10th and 14th weeks• the following table shows the bonus percentage based on the average result
of the three mid-semester tests.Absence counts as 0%. Exam: Bonuses are added as % to
your result
• Average of the 3 tests (%) Bonus (%) 0 - 49.990
• 50.00 - 53.993
• 54.00 - 57.994
• 58.00 - 61.995
• 62.00 - 65.996
• 66.00 - 69.99 7• 70.00 - 73.99 8• 74.00 - 77.99 9• 78.00 - 81.99
10• 82.00 - 85.99 11• 86.00 - 100 12
•On week 11 – 15 practicals in the Theoretical Building, high floor, students’ lab of the Dept. of Biochemistry
(no seminars)
Lab safety rules for students I.• Report all accidents, injuries, and breakage of glass or
equipment to instructor immediately.• Keep pathways clear by placing extra items (books, bags, etc.)
into the cupboards outside or under the work tables. If under the tables, make sure that these items can not be stepped on.
• Long hair (chin-length or longer) must be tied back to avoid catching fire.
• Wear sensible clothing including footwear. Loose clothing should be secured so they do not get caught in a flame or chemicals.
• Work quietly — know what you are doing by reading the assigned experiment before you start to work. Pay close attention to any cautions described in the laboratory exercises
• Do not taste or smell chemicals.
Lab safety rules for students II.• Never point a test tube being heated or mixed at another
student or yourself. Never look into a test tube while you are heating it or mixing its content.
• Unauthorized experiments or procedures must not be attempted.
• Do not leave water taps running unattended. Keep solids out of the sink.
• Leave your work station clean and in good order before leaving the laboratory.
• Disposal of chemicals - ask the Lecturer or the Technician.• Waste material should be placed in the bins provided• Do not lean, hang over or sit on the laboratory tables.• Do not leave the laboratory without permission of the teacher.• Handle mice with care according to the instruction of your
teacher.
Lab safety rules for students III.• Handle microorganisms with care, according to
instructions. After working with microorganisms wash/disinfect your hands.
• Fooling around or "horse play" in the laboratory is absolutely forbidden.
• Anyone wearing acrylic nails will not be allowed to work with matches, lighted splints, bunsen burners, etc.
• Do not lift any solutions, glassware or other types of apparatus above eye level.
• Follow all instructions given by your teacher.• Learn how to transport all materials and equipment safely.• It is expressly forbidden to remove any chemicals or
solvents from the lab.• No eating or drinking in the lab at any time!
Lab safety rules for students IV.• Learn the location of the fire extinguisher, eye wash station, and
first aid kit.• If skin is contaminated
– with acid: wipe off with dry (paper) towel, flush with tap water and cold 2% NaHCO3 solution
– with base: flush with tap water and 0,5% acetic acid• If eyes are contaminated
– with acid: rinse with tap water and 2% Na-tetraborate (borax) solution
– with base: rinse with tap water and 2% boric acid solution• If swallowed: rinse your mouth with water and drink water• Visit doctor
GENETICS
Classical (Mendelian, transmission) genetics
Molecular genetics (genes, geneexpression, regulation, geneproducts)
„Forward and reverse genetics”
Population genetics (genetikai variábilitás a populáiók szintjén; molekuláris jegyek is)
Genomics, proteomics, bioinformatic science
Original
DNA RNA Protein Central dogma
Modified
DNA RNA Protein
Reverse transcriptase
New concept
Genom Transcriptome Proteome
Milestones in genetics
1865 Gregor Mendel The rules of inheritance
1869 Friedrich Michel Discovery of nucleic acids
1900 de Vrie & Tchermak Rediscovery of Mendel’s principles
1902 Archibald Garrod First genetic disease noted (alkaptonuria)
1902 Walter Stutton Proposal of chromosomal theory
1908 Hardy & WeinberdHardy-Weinberg principle formulated
1910 Thomas Morgan Genes are on chromosomes
1929 Griffith Pneumococcus transformation
1941 Tatum & Beadle One gene- one enzyme hypothesis
1944 Avery, McLeod & McCarty DNA is the genetic material
1953 Watson, Crick, Franklin & Wilkins Structure of DNA
1958 Meselson & Stahl Semiconservative replication of DNA
1961 Sidney Brenner Discovery of mRNA
1966 Nierenberg & Khorana Completion of the genetic code
1973 Boyer & Cohen First use of plasmid to clone DNA
1995 Fleischmann et al.Sequence of the first genome
1997 Ian Wilmut First mammalian cloning
2001 Venter et al. Sequencing of the human genome
Mendel, 1865. Versuche über Pflanzenhybriden
(Experiments in plant hybridyzation)
quantiative analysis
Milestones in genetics
1865 Gregor Mendel The rules of inheritance
1869 Friedrich Michel Discovery of nucleic acids
1900 de Vrie & Tchermak Rediscovery of Mendel’s principles
1902 Archibald Garrod First genetic disease noted (alkaptonuria)
1902 Walter Stutton Proposal of chromosomal theory
1908 Hardy & WeinberdHardy-Weinberg principle formulated
1910 Thomas Morgan Genes are on chromosomes
1929 Griffith Pneumococcus transformation
1941 Tatum & Beadle One gene- one enzyme hypothesis
1944 Avery, McLeod & McCarty DNA is the genetic material
1953 Watson, Crick, Franklin & Wilkins Structure of DNA
1958 Meselson & Stahl Semiconservative replication of DNA
1961 Sidney Brenner Discovery of mRNA
1966 Nierenberg & Khorana Completion of the genetic code
1973 Boyer & Cohen First use of plasmid to clone DNA
1995 Fleischmann et al.Sequence of the first genome
1997 Ian Wilmut First mammalian cloning
2001 Venter et al. Sequencing of the human genome
Milestones in genetics
1865 Gregor Mendel The rules of inheritance
1869 Friedrich Michel Discovery of nucleic acids
1900 de Vrie & Tchermak Rediscovery of Mendel’s principles
1902 Archibald Garrod First genetic disease noted
1902 Walter Stutton Proposal of chromosomal theory
1908 Hardy & WeinberdHardy-Weinberg principle formulated
1910 Thomas Morgan Genes are on chromosomes
1929 Griffith Pneumococcus transformation
1941 Tatum & Beadle One gene- one enzyme hypothesis
1944 Avery, McLeod & McCarty DNA is the genetic material
1953 Watson, Crick, Franklin & Wilkins Structure of DNA
1958 Meselson & Stahl Semiconservative replication of DNA
1961 Sidney Brenner Discovery of mRNA
1966 Nierenberg & Khorana Completion of the genetic code
1973 Boyer & Cohen First use of plasmid to clone DNA
1995 Fleischmann et al.Sequence of the first genome
1997 Ian Wilmut First mammalian cloning
2001 Venter et al. Sequencing of the human genome
Milestones in genetics
1865 Gregor Mendel The rules of inheritance
1869 Friedrich Michel Discovery of nucleic acids
1900 de Vrie & Tchermak Rediscovery of Mendel’s principles
1902 Archibald Garrod First genetic disease noted
1902 Walter Stutton Proposal of chromosomal theory
1908 Hardy & WeinberdHardy-Weinberg principle formulated
1910 Thomas Morgan Genes are on chromosomes
1929 Griffith Pneumococcus transformation
1941 Tatum & Beadle One gene- one enzyme hypothesis
1944 Avery, McLeod & McCarty DNA is the genetic material
1953 Watson, Crick, Franklin & Wilkins Structure of DNA
1958 Meselson & Stahl Semiconservative replication of DNA
1961 Sidney Brenner Discovery of mRNA
1966 Nierenberg & Khorana Completion of the genetic code
1973 Boyer & Cohen First use of plasmid to clone DNA
1995 Fleischmann et al.Sequence of the first genome
1997 Ian Wilmut First mammalian cloning
2001 Venter et al. Sequencing of the human genome
Venter JC, Adams MD, Myers EW, Li PW, Mural RJ, Sutton GG, Smith HO, Yandell M, Evans CA, Holt RA, Gocayne JD, Amanatides P, Ballew RM, Huson DH, Wortman JR, Zhang Q, Kodira CD, Zheng XH, Chen L, Skupski M, Subramanian G, Thomas PD, Zhang J, Gabor Miklos GL, Nelson C, Broder S, Clark AG, Nadeau J, McKusick VA, Zinder N, Levine AJ, Roberts RJ, Simon M, Slayman C, Hunkapiller M, Bolanos R, Delcher A, Dew I, Fasulo D, Flanigan M, Florea L, Halpern A, Hannenhalli S, Kravitz S, Levy S, Mobarry C, Reinert K, Remington K, Abu-Threideh J, Beasley E, Biddick K, Bonazzi V, Brandon R, Cargill M, Chandramouliswaran I, Charlab R, Chaturvedi K, Deng Z, Di Francesco V, Dunn P, Eilbeck K, Evangelista C, Gabrielian AE, Gan W, Ge W, Gong F, Gu Z, Guan P, Heiman TJ, Higgins ME, Ji RR, Ke Z, Ketchum KA, Lai Z, Lei Y, Li Z, Li J, Liang Y, Lin X, Lu F, Merkulov GV, Milshina N, Moore HM, Naik AK, Narayan VA, Neelam B, Nusskern D, Rusch DB, Salzberg S, Shao W, Shue B, Sun J, Wang Z, Wang A, Wang X, Wang J, Wei M, Wides R, Xiao C, Yan C, Yao A, Ye J, Zhan M, Zhang W, Zhang H, Zhao Q, Zheng L, Zhong F, Zhong W, Zhu S, Zhao S, Gilbert D, Baumhueter S, Spier G, Carter C, Cravchik A, Woodage T, Ali F, An H, Awe A, Baldwin D, Baden H, Barnstead M, Barrow I, Beeson K, Busam D, Carver A, Center A, Cheng ML, Curry L, Danaher S, Davenport L, Desilets R, Dietz S, Dodson K, Doup L, Ferriera S, Garg N, Gluecksmann A, Hart B, Haynes J, Haynes C, Heiner C, Hladun S, Hostin D, Houck J, Howland T, Ibegwam C, Johnson J, Kalush F, Kline L, Koduru S, Love A, Mann F, May D, McCawley S, McIntosh T, McMullen I, Moy M, Moy L, Murphy B, Nelson K, Pfannkoch C, Pratts E, Puri V, Qureshi H, Reardon M, Rodriguez R, Rogers YH, Romblad D, Ruhfel B, Scott R, Sitter C, Smallwood M, Stewart E, Strong R, Suh E, Thomas R, Tint NN, Tse S, Vech C, Wang G, Wetter J, Williams S, Williams M, Windsor S, Winn-Deen E, Wolfe K, Zaveri J, Zaveri K, Abril JF, Guigo R, Campbell MJ, Sjolander KV, Karlak B, Kejariwal A, Mi H, Lazareva B, Hatton T, Narechania A, Diemer K, Muruganujan A, Guo N, Sato S, Bafna V, Istrail S, Lippert R, Schwartz R, Walenz B, Yooseph S, Allen D, Basu A, Baxendale J, Blick L, Caminha M, Carnes-Stine J, Caulk P, Chiang YH, Coyne M, Dahlke C, Mays A, Dombroski M, Donnelly M, Ely D, Esparham S, Fosler C, Gire H, Glanowski S, Glasser K, Glodek A, Gorokhov M, Graham K, Gropman B, Harris M, Heil J, Henderson S, Hoover J, Jennings D, Jordan C, Jordan J, Kasha J, Kagan L, Kraft C, Levitsky A, Lewis M, Liu X, Lopez J, Ma D, Majoros W, McDaniel J, Murphy S, Newman M, Nguyen T, Nguyen N, Nodell M, Pan S, Peck J, Peterson M, Rowe W, Sanders R, Scott J, Simpson M, Smith T, Sprague A, Stockwell T, Turner R, Venter E, Wang M, Wen M, Wu D, Wu M, Xia A, Zandieh A, Zhu X
The sequence of the human genome.Science. 2001 Feb 16;291(5507):1304-51. Erratum in: Science 2001 Jun 5;292(5523):1838.