GenomeAnnotationwithCompanion(Part2)Youshouldhavegottenanemailindicatingthestatusofyourannotation(ie.jobstartedandjobcomplete).Theemailcontainsalinktotheannotationoutput.
• Exploreyourresultswithyourgroupanddiscusstheannotationfindings:
o Whatdoesthegenomestaticstabtellyouaboutyourannotation?Aretheresultssurprising?YoucanexplorethereferencegenomeyouusedinEuPathDBtohelpyouassesstheresults.(Forexample,areyougettingareasonablenumberofgenes?WhatabouttheGCcontent?Numberofnon-codinggenes?)
o Whatdoesthe“Resultfiles”tabcontain?WhatisanAGPfile?WhatisaGFF3file?
o Whatdoesthe“orthology”tabdisplay?Howmanypredictedproteins
fromyournewgenomeareincommonwithonesfromthereferencegenome?Howmanyareuniquetoyours?Whatdosingletonsrepresent(clickonthesingletonnumbertoseewhatthesegenesare?
o Whatdoesthephylogenytabrepresent?Doesitmakesense?
o ExaminetheSyntenytab–arethesegenomessyntenic?