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Geometric deep learning - European Research Council · 2018-11-20 · Did 'Muslim Migrants' Attack...

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deep learning Geometric Michael Bronstein
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deep learning Geometric Michael Bronstein

deep learning

1958 1959 1982 1987 1995 1997 1998 1999 2006 2012 2014 2015

Perceptron

Rosenblatt

Visual cortex

Hubel&Wiesel

Backprop

Werbos

Neurocognitron

Fukushima

RNN / LSTM

Schmidhuber

CNN

LeCun

Autoencoder

LeCun, Hinton

2010 2016 2017 2018

Computation Data Algorithms

Imagenet breakthrough

Krizhevsky

Computer vision Speech & language Healthcare

“classical” computer vision

handcrafted features

SVM face

layer 1 layer 2 layer 3

deep learning era

learnable task-specific features

Euclidean Non-Euclidean

geometric deep learning

NIPS 2017 tutorial on geometric deep learning (>2000 participants)

Faceshift (acquired by Apple in 2015)

Images: Faceshift

Analysis Synthesis

Non-Euclidean Euclidean

Convolutional neural network on surfaces

Boscaini, Masci, B, Vandergheynst 2015

Monti, Boscaini, Masci, Rodola, Svoboda, B 2017

Deformable 3D shape correspondence learned with intrinsic CNN

Graphs & networks Surfaces

Monti, Boscaini, Masci, Rodola, Svoboda, B 2017

Deformable 3D shape correspondence learned with intrinsic CNN

gender age work birthplace education religion

Graphs & networks Surfaces

Vosoughi et al. 2018

Did 'Muslim Migrants' Attack a Catholic Church? A video of pro-migrant protesters being removed from the Basilica of Saint-Denis in France was shared with the inflammatory and incorrect claim that it shows Muslim immigrants attacking a church.

US Patent 15006694; multiple patents pending

Federico Monti Ernesto Schmitt Damon

Mannion

Image: Netflix

1

8

9

2

10

1

6

2

8

100K × 10M ?

1

8

9

2

10

1

6

2

8

? 7

6

4

2

3

6

9

7 7

6 6

Monti, B, Bresson 2017

Ying et al. 2018

3B nodes 18B edges

Henrion et al. 2017

Image: IceCube neutrino observatory

Choma, Monti, Gerhardt, Palczewski, Ronaghi, Prabhat, Bhimji, B, Klein, Bruna 2018

Example of IceCube detected event

PD-1 PD-L1

Bruno Correia Pablo Gainza

Disembodied binding sites

Designed ligand

Database of side chain surface fingerprints

Database of scaffold surface fingerprints

Target protein

… Manifold

CNN

Manifold CNN

Designed seed

Com

puta

tion

al c

ost

Experiment

10-2

103

105

107

Sp

ace

siz

e

1012

109

106

103

1060

All synthesizable mid-size molecules

Candidate drug

Com

puta

tion

al c

ost

Schrödinger

Experiment

10-2

103

105

107

Sp

ace

siz

e

1012

109

106

103

1060

All synthesizable mid-size molecules

Candidate drug

Com

puta

tion

al c

ost

DFT

Schrödinger

Experiment

10-2

103

105

107

Sp

ace

siz

e

1012

109

106

103

1060

All synthesizable mid-size molecules

Candidate drug

Duvenaud et al. 2015; Gilmer et al. 2017

Com

puta

tion

al c

ostGraph CNN

DFT

Schrödinger

Experiment

10-2

103

105

107

Sp

ace

siz

e

1012

109

106

103

1060

All synthesizable mid-size molecules

Candidate drug

Duvenaud et al. 2015; Gilmer et al. 2017

toxicity, solubilit y,

e ciency...

En

cod

er

gra

ph

CN

N

Analysis: predicting physical and chemical properties

Enco

der

gra

ph C

NN

Deco

der

gra

ph

CN

N

Continuous representation

space of molecules

Gomez-Bombarelli et al. 2016; Cao, Kipf 2018

Synthesis: generating molecules with desired properties

5000 drugs

>1011 drug pairs

Zitnik et al. 2018

Zitnik et al. 2018

Zitnik et al. 2018

Kirill Veselkov Jozef Youssef

“food passport”

geometric deep learning .com

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