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Variability in Ranavirus Infection in Cell Lines of Cold-Blooded Vertebrates Gitanjali P. Talreja and Thomas B. Lentz Biotechnology Program, North Carolina State University, Raleigh, NC Ranaviruses are large, double-stranded DNA viruses that infect cold-blooded vertebrates, such as amphibians, reptiles, and bony fish. The spread of these viruses has been implicated as a contributing factor in amphibian population declines in the United States, Canada, and the United Kingdom. They are suspected factors in population declines of reptiles and fish and studies to evaluate this are ongoing. Understanding the susceptibility of different species to infection is an important step towards preventing viral spread, and therefore, reducing the impact of infection. The present study compares Ranavirus infection in cell lines derived from different host species. Cell lines from fish, Fathead Minnow and Epithelioma Papulosum Cyprini, amphibian, Xenopus Laevis, and reptile, Terrapene Carolina and Vipera Russelli, were used. Cell lines were infected with Frog Virus 3 strain because this is the most well-studied strain of Ranavirus. Multiple assays were used to determine the level of infectivity among the different host species. A plaque assay was performed with each cell line to determine if infection led to plaque formation, which is indicative of lytic replication. Periodic observation of infected cells monitored the development of plaques in each cell line and was used to estimate time for plaque formation. Additionally, viral load was measured by qPCR after infection of each cell type. Determining differences in viral load allows us to make inferences about alterations in the mechanisms of virus replication. Overall, these studies help us understand how the virus infects different species and the susceptibility of each to Ranavirus. Species of temperate freshwater fish belonging to Pimephales genus of the cyprinid family. Epithelial cell type found in connective tissue and muscle It is a flat bodied, aquatic frog that is found in streams and ponds. It is a species of a box turtle; Terrapean carolina, that has a hinged lower shell that allows itself to enclose itself. Epithelial cell type found in the heart. It is a monotypic genus of venomous Old World viper. It is found in Asia throughout Indian subcontinent. Cell type found in the heart. Epithelial cell type found in the kidney. Xenopus laevis, African Clawed Frog (A6) y = -1.835ln(x) + 15.076 R² = 0.9987 0.00 5.00 10.00 15.00 20.00 25.00 30.00 35.00 40.00 0.00001 0.0001 0.001 0.01 0.1 1 Ct Concentration Differences in Viral Load of Experimental Cells Standard Curve FHM (+) EPC (+) A6 (+) VH (+) Cells (-) Log. (Standard Curve) 0 0.01 0.02 0.03 0.04 0.05 0.06 0.07 0.08 0.09 FHM EPC A6 VH Viral DNA (relative copy #)/Total DNA (ng) Cell Lines Differences in Replication in Experimental Cell Lines False Positives Epithelial cell type found in skin. There are a range of differences in the relative copy number of viral DNA between cell lines. The FHM cells contain the largest amount of viral DNA, while VH cells contain the smallest amount of viral DNA. This illustrates that the viral replication mechanisms differ between the cell lines. There was a very similar amount of viral DNA in FHM and EPC cells. There is greater replication of virus in FHM and EPC cells compared to the other cell lines. This is evidence that the Fathead Minnow species (FHM and EPC cells) is more susceptible to viral infection by the FV3 strain of Ranavirus than Xenopus Laevis (Amphibian) or Russell’s Viper (Reptile). At 48 hours, FHM cells have the largest amount of viral DNA. There is a 14-fold difference between the relative copy number of viral DNA in FHM and VH cells. FHM and A6 cells differ moderately as there is a 4-fold difference in relative copy number of viral DNA between the cell lines. In contrast, there is only a 2-fold difference between FHM and EPC cells. All of the experimental data points fall in the range of the standard curve between 1X and (1*10^-2) X. Abstract Cell Culture Background qPCR Results Plaque Assays Methods We plated cells from each cell line into separate flasks. We transferred a specific volume of cells to a six well- plate. When cells reached a 100% confluence, they were infected with 1000 plaque forming units (pfu) of FV3 strain of Ranavirus. Cells were incubated overnight. Cells were observed to visualize formation of plaques and/or changes in cell conformation. We used the cell counter to determine the concentration of cells. We plated 35,000 cells from each cell line into a 24-well plate. 4 cell lines were studied and each cell line occupied 6 wells. The cells were infected with 35,000 pfu of FV3 strain of Ranavirus. Cells were incubated for 48 hours before collecting the precipitate. A 3X Freeze-Thaw Cycle was performed after which a solution of NaCl and PEG were added to cell culture medium to collect precipitate. A series of wash buffers were added to individuals cell precipitates to remove extracellular materials and a elute buffer was used to precipitate DNA. DNA purity and concentration was measured. Quantitative PCR was used to determine the viral load. Cells were observed on a continuous basis. Cell Lines FHM EPC A6 VH TH-1 1 0-10 plaques 0-10 plaques 0-10 plaques 0-10 plaques 0-10 plaques 3 10-40 plaques 40-60 plaques 0-10 plaques 0-10 plaques N/O 4 90-150 plaques Cells dead 0-10 plaques 0-10 plaques 10-40 plaques 6 90-150 plaques 0-10 plaques 10-40 plaques 150-250 plaques 7 90-150 plaques 0-10 plaques 40-60 plaques 150-250 plaques 9 Cells dead 0-10 plaques 60-90 plaques Cells dead 11 0-10 plaques Cells dead Fathead Minnow (FHM) Observations were made on the number of plaques (shown in the table) and general size and shape of plaques (shown in images). Other than that, cell death was also noted for individual cell types. From the table, it is seen that FHM had the maximum number of plaques in the range of 90-150 before the cells died 40-60 plaques were observed in EPC cells before their demise. The A6 as very unique because no plaques were seen nor did cell death occur. VH cells did not exhibit plaque formation until Day 6 post-infection and 60-90 plaques were seen before cells died. TH-1 exhibited plaque formation on Day 4 and 150-250 plaques were seen before cell death occurred. The general plaque shape and sizes are shown in the images for each cell type. FHM cells had the largest plaque size, plaques in EPC cells were large and moderate , while the plaque size for VH and TH-1 cells were small. Days Post Infection Epithelioma Papulosum Cyprini (EPC) Russell’s viper (VH) Terrapene heart (TH-1) Plaque Assay qPCR Assay Dr. Matthew C. Allender, University of Illinois – qPCR primers Dr. Matthew Gray, University of Tennessee – Cell lines Dr. Jacques Robert, University of Rochester – FV3-GFP Virus https ://en.wikipedia.org/wiki/Daboia https:// en.wikipedia.org/wiki/Common_box_turtle https ://en.wikipedia.org/wiki/Fathead_minnow Acknowledgements
Transcript
  • Variability in Ranavirus Infection in Cell Lines of Cold-Blooded Vertebrates Gitanjali P. Talreja and Thomas B. Lentz

    Biotechnology Program, North Carolina State University, Raleigh, NC

    Ranaviruses are large, double-stranded DNA viruses that infect cold-blooded vertebrates, such as amphibians, reptiles, and bony fish. The spread of these viruses has been implicated as a contributing factor in amphibian population declines in the United States, Canada, and the United Kingdom. They are suspected factors in population declines of reptiles and fish and studies to evaluate this are ongoing. Understanding the susceptibility of different species to infection is an important step towards preventing viral spread, and therefore, reducing the impact of infection. The present study compares Ranavirus infection in cell lines derived from different host species. Cell lines from fish, Fathead Minnow and Epithelioma Papulosum Cyprini, amphibian, Xenopus Laevis, and reptile, Terrapene Carolina and Vipera Russelli, were used. Cell lines were infected with Frog Virus 3 strain because this is the most well-studied strain of Ranavirus. Multiple assays were used to determine the level of infectivity among the different host species. A plaque assay was performed with each cell line to determine if infection led to plaque formation, which is indicative of lytic replication. Periodic observation of infected cells monitored the development of plaques in each cell line and was used to estimate time for plaque formation. Additionally, viral load was measured by qPCR after infection of each cell type. Determining differences in viral load allows us to make inferences about alterations in the mechanisms of virus replication. Overall, these studies help us understand how the virus infects different species and the susceptibility of each to Ranavirus.

    Species of temperate freshwater fish belonging to

    Pimephales genus of the cyprinid family.

    Epithelial cell type found in connective tissue and muscle

    It is a flat bodied, aquatic frog that is found in streams and

    ponds.

    It is a species of a box turtle; Terrapean carolina, that has a hinged lower shell

    that allows itself to enclose itself.

    Epithelial cell type found in the heart.

    It is a monotypic genus of venomous Old World viper.

    It is found in Asia throughout Indian

    subcontinent.

    Cell type found in the heart.

    Epithelial cell type found in the kidney.

    Xenopus laevis, African Clawed Frog (A6)

    y = -1.835ln(x) + 15.076R² = 0.9987

    0.00

    5.00

    10.00

    15.00

    20.00

    25.00

    30.00

    35.00

    40.00

    0.00001 0.0001 0.001 0.01 0.1 1

    Ct

    Concentration

    Differences in Viral Load of Experimental Cells

    Standard Curve

    FHM (+)

    EPC (+)

    A6 (+)

    VH (+)

    Cells (-)

    Log. (Standard Curve)

    0

    0.01

    0.02

    0.03

    0.04

    0.05

    0.06

    0.07

    0.08

    0.09

    FHM EPC A6 VH

    Vir

    al D

    NA

    (re

    lati

    ve c

    op

    y #)

    /To

    tal D

    NA

    (n

    g)

    Cell Lines

    Differences in Replication in Experimental Cell Lines

    False Positives

    Epithelial cell type found in skin.

    There are a range of differences in the relative copy number of viral DNA between cell lines. The FHM cells contain the largest amount of viral DNA, while VH cells contain the smallest amount of viral DNA. This illustrates that the viral replication mechanisms differ between the cell lines. There was a very similar amount of viral DNA in FHM and EPC cells. There is greater replication of virus in FHM and EPC cells compared to the other cell lines. This is evidence that the Fathead Minnow species (FHM and EPC cells) is more susceptible to viral infection by the FV3 strain of Ranavirus than Xenopus Laevis (Amphibian) or Russell’s Viper (Reptile).

    At 48 hours, FHM cells have the largest amount of viral DNA. There is a 14-fold difference between the relative copy number of viral DNA in FHM and VH cells. FHM and A6 cells differ moderately as there is a 4-fold difference in relative copy number of viral DNA between the cell lines. In contrast, there is

    only a 2-fold difference between FHM and EPC cells.

    All of the experimental data points fall in the range of

    the standard curve between 1X and (1*10^-2) X.

    Abstract

    Cell Culture Background

    qPCR Results

    Plaque Assays

    Methods

    We plated cells from each cell line into separate flasks.

    We transferred a specific volume of cells to a six well-

    plate.

    When cells reached a 100% confluence, they were

    infected with 1000 plaque forming units (pfu) of FV3

    strain of Ranavirus.

    Cells were incubated overnight.

    Cells were observed to visualize formation of plaques

    and/or changes in cell conformation.

    We used the cell counter to determine the

    concentration of cells.

    We plated 35,000 cells from each cell line into a 24-well plate. 4

    cell lines were studied and each cell line occupied 6 wells.

    The cells were infected with 35,000 pfu of FV3 strain of

    Ranavirus.

    Cells were incubated for 48 hours before collecting the

    precipitate.

    A 3X Freeze-Thaw Cycle was performed after which a solution of

    NaCl and PEG were added to cell culture medium to collect precipitate.

    A series of wash buffers were added to individuals cell precipitates to remove

    extracellular materials and a elute buffer was used to precipitate DNA. DNA purity and

    concentration was measured.

    Quantitative PCR was used to

    determine the viral load.

    Cells were observed on a continuous basis.

    Cell Lines FHM EPC A6 VH TH-1

    1 0-10 plaques 0-10 plaques 0-10 plaques 0-10 plaques 0-10 plaques

    3 10-40 plaques 40-60 plaques 0-10 plaques 0-10 plaques N/O

    4 90-150 plaques Cells dead 0-10 plaques 0-10 plaques 10-40 plaques

    6 90-150 plaques 0-10 plaques 10-40 plaques 150-250 plaques

    7 90-150 plaques 0-10 plaques 40-60 plaques 150-250 plaques

    9 Cells dead 0-10 plaques 60-90 plaques Cells dead

    11 0-10 plaques Cells dead

    Fathead Minnow (FHM)Observations were made on the number of plaques (shown in the table) and general size and shape of plaques (shown in images). Other than that, cell death was also noted for individual cell types. From the table, it is seen that FHM had the maximum number of plaques in the range of 90-150 before the cells died 40-60 plaques were observed in EPC cells before their demise. The A6 as very unique because no plaques were seen nor did cell death occur. VH cells did not exhibit plaque formation until Day 6 post-infection and 60-90 plaques were seen before cells died. TH-1 exhibited plaque formation on Day 4 and 150-250 plaques were seen before cell death occurred. The general plaque shape and sizes are shown in the images for each cell type. FHM cells had the largest plaque size, plaques in EPC cells were large and moderate , while the plaque size for VH and TH-1 cells were small.

    Da

    ys

    Po

    st I

    nfe

    ctio

    n

    Epithelioma Papulosum Cyprini (EPC)

    Russell’s viper (VH) Terrapene heart (TH-1)

    Plaque Assay

    qPCR Assay

    Dr. Matthew C. Allender, University of Illinois – qPCR primersDr. Matthew Gray, University of Tennessee – Cell linesDr. Jacques Robert, University of Rochester – FV3-GFP Virushttps://en.wikipedia.org/wiki/Daboiahttps://en.wikipedia.org/wiki/Common_box_turtlehttps://en.wikipedia.org/wiki/Fathead_minnow

    Acknowledgements

    https://en.wikipedia.org/wiki/Daboiahttps://en.wikipedia.org/wiki/Common_box_turtlehttps://en.wikipedia.org/wiki/Fathead_minnow

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