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HPC Cloud Virtual labs Research · PDF file 2017. 3. 9. · Vidyo – Managed by...

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  • Research

    Life Cycle

    Acquire

    Plan

    Analyse

    Access

    Collaborate

    Manage

    Archive

    Publish

    Reuse

    Data

    HPC

    Cloud

    Virtual labs

    Dataset transfer

    Collaborative sites

    Dataset transfer

    Databases

    Web-based file sharing

    Collaborative sites Automated ingest

    and management

    RDM support

    Technical advice

    Costing

    Grant assistance

    Comprehend

    Visualisation facilities

    Institutional repository

  • Emerging Researcher Series

    Research Collaboration Research Collaboration

    Thursday, 2 March 2017

    Jason van Rooyen - eResearch Analyst

    Heine de Jager – Senior Technical Specialist

  • Research Collaboration

    Tools, platforms and services which assist researchers

    to collaborate more effectively locally, nationally or

    internationally.

    Collaboration

    Research Collaboration

    2 March2017

  • Lee Lab:• Managing access permissions • Who and how

    • Internal vs. external collaborators

    • Privacy and POPI act

    • Small vs. large • Tools • Firewalls • Bandwidth

    • Costs • Bandwidth

    • Importance vs. other traffic • Licence fees

    //researchdata

    Challenges of sharing data

    Research Collaboration

    2 March2017

  • Collaboration Platforms & Tools

    � Research Collaboration Tools:

    � Communication tools:

    • Web & Video Conferencing

    • Blogging & Wiki’s

    • Micro Blogging

    • Mailing Lists

    � Team Collaboration

    � Project Management

    � Data Transfers

    � File Sharing

    Research Collaboration

    2 March2017

  • Collaboration Sites, Platforms & ToolsCollaboration Sites, Platforms & Tools

    Research Collaboration

    2 March2017

  • Communication Tools - Web & Video Conferencing

    � Local (UCT) Platforms:

    � Skype

    � Adobe Connect

    � Polycom

    � National Platforms:

    � Vidyo – Managed by Tenet

    � MConf Web Conferencing – Managed by SANREN

    � International Platforms:

    � Google Hangouts

    Research Collaboration

    2 March2017

  • Communication Tools - Blogging & Wiki’s

    � Blogging & Wiki’s

    � SharePoint

    [email protected] - www.blogs.uct.ac.za.

    � Office365

    � Google

    � Micro Blogging:

    � Yammer -- https://www.yammer.com/uct.ac.za/

    � Facebook

    � Mailing lists:

    � ICTS Mailing List System

    Research Collaboration

    2 March2017

  • Team Collaboration & Project Management

    � Team Collaboration:

    � Microsoft OneNote

    � Microsoft SharePoint (UCT site license)

    � Slack -- www.slack.org

    � RedMine -- http://www.redmine.org/projects/redmine/wiki

    � Confluence (commercial)

    Research Collaboration

    2 March2017

  • Team Collaboration & Project Management

    � Project Management:

    � Microsoft Project (UCT site license)

    � RedMine -- http://www.redmine.org/projects/redmine/wiki

    � Trello

    Research Collaboration

    2 March2017

    � Team Collaboration:

    � Microsoft 365

    � Google

  • Team Collaboration – Microsoft OneNote & Class Notebook

    Research Collaboration

    2 March2017

  • Team Collaboration – Microsoft & Google Tools

    Research Collaboration

    2 March2017

  • Team Collaboration – Microsoft SharePoint

    Research Collaboration

    2 March2017

  • Team Collaboration – Microsoft SharePoint

    Research Collaboration

    2 March2017

  • Team Collaboration – Microsoft SharePoint

    Research Collaboration

    2 March2017

  • Team Collaboration – Microsoft SharePoint

    Research Collaboration

    2 March2017

  • Team Collaboration – Microsoft SharePoint

    Research Collaboration

    2 March2017

  • • Open Source - RedMine

    Team Collaboration – RedMine

    Research Collaboration

    2 March2017

  • Collaboration & Project Management - Trello

    • Open Source - Trello

    Research Collaboration

    2 March2017

  • Collaboration & Project Management - Slack

    • Open Source - Slack

    Research Collaboration

    2 March2017

  • Collaboration Platforms – A Use Case – Clinical Trials

    • Clinical Trial Management using OpenClinica

    • Data Management – UCT central research data store

    • Document Management using Microsoft SharePoint � Calendar – site visits / patient visits / scheduling

    � Audit Trails

    � Document version tracking via check-in & check-out

    � Co-authoring of documents

    � Announcements

    � Alerts & Notifications

    � Team Discussions

    � Team Task Lists

    • Data Analysis using Stata

    Research Collaboration

    2 March2017

  • The Connected WorldThe Connected World

    Research Collaboration

    2 March2017

  • Dataset Transfers - Inter-continental Connectivity

    � West Coast of Africa:

    � SAT3

    � ACE

    � WACS **

    � East Coast of Africa:

    � Seacom **

    � EASSy

    ** UCT connects to the rest of the world via these undersea cables.

    Research Collaboration

    2 March2017

  • Dataset Transfers - National Connectivity

    � South African National Research Network

    (SANREN)

    � We have 10 Gbps connecting all

    universities and other

    tertiary institutions in

    South Africa

    � International

    connectivity 1.2 Gbps

    on the WACS cable

    Research Collaboration

    2 March2017

  • Data TransferData Transfer

    Research Collaboration

    2 March2017

  • Data Transfers

    < 20MB file � Can Use Email

    > 20Mb < 128GB � Use File Sender

    Bigger than 128GB � Use Globus or (GridFTP)

    Download – Send Link Upload – Send Voucher

    Research Collaboration

    2 March2017

  • Dataset Transfer Tools – FileSender

    • Send files to external

    collaborators

    • Send guest vouchers • Not suitable for

    multiple files unless

    zipped

    Research Collaboration

    2 March2017

  • Gathering Data

    FileSender (Receiver)

    Research Collaboration

    2 March2017

  • Gathering Data

    FileSender (Voucher)

    Research Collaboration

    2 March2017

  • Dataset Transfer Tools – Globus Online

    • GridFTP Made Easy

    • Software-as-a-service (SAAS)

    • Free Option

    • University of Chicago and

    Argonne National Laboratory

    Research Collaboration

    2 March2017

  • Dataset Transfer Tools – Globus Online

    Research Collaboration

    2 March2017

  • Web-based File SharingWeb-based File Sharing

    Research Collaboration

    2 March2017

  • Gathering Data Research collaboration

    Web-based File Sharing – NextCloud

    2 March2017

  • Gathering Data Research collaboration

    Web-based File Sharing – NextCloud

    2 March2017

  • Gathering Data

    Code Sharing – GitHub

    What is GitHub exactly:

    � Code sharing and publishing

    � Social networking for developers

    � Based on Git (started by Linus Torvalds)

    � Stores and Manages revisions of projects

    � Access Control

    � Wikis

    � Even Websites

    Research collaboration

    2 March2017

  • EndEnd

    Research Collaboration

    2 March2017

  • Research Collaboration

    Research Collaboration

    Dataset Transfer

    Can you help me transfer data from overseas?

    Databases

    Can you help us migrate our old database to a safer more current system?

    Web-based File Sharing

    Can you help me share data with my project team?

    I need to send a large file to a colleague overseas. What’s the best way?

    Collaborative Sites & Platforms

    Do you offer any collaborative spaces for my team to work and to share data?

    What if some members of the team are external to UCT?

    2 March2017

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