http://phenotypercn.wordpress.com/

PI of TAIR, The Arabidopsis Information Resource Carnegie Institution for Science, located at Stanford, CaliforniaBackground – genetics and developmental biology of Arabidopsis

Me:

http://phenotypercn.wordpress.com/

Plant Working Group

• Great variety of needs and approaches– Ecology– Systematics– Genetics/genomics

• Great variety of species of interest– ‘Model ‘ plants for genetic approaches– Crop plants– Models for ecological studies– Plants of evolutionary interest– Models for population biology

• Great enthusiasm!

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Plant Working Group - Resources

• Ontologies• High throughput phenotyping projects• Other Projects

– Coordination– Resource development

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Plant Resources - Ontologies

• Plant Ontology• Crop Ontology• Trait Ontology• OBOE / Plant Functional

Trait Ontology many others…

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Plant Resources – HTP Phenotyping

• Jülich Plant Phenotyping Center (Germany)

• Australian Plant Phenomics Facility• AGRON-OMICS (Europe)• Phenoscope (France)

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Plant Resources – Other projects

• TraitNet (RCN)

• International Plant Phenomics Network

• iPlant Genotype to Phenotype (iPG2P)

• Gigavision (Justin Borevitz, Chicago)

Gigavision

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Plant Working Group – Questions

• Large and diverse group of researchers with lots of active projects

– Should we aim for one plant ontology? interoperability? common data formats?

– What tools and methods need to be developed?

– How much can we share the work of developing them?