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Vol. 4, 90 1-909, November 1993 Cell Growth & Differentiation 901 Identification of a Thyroid Hormone Response Element in the Mouse Myogenin Gene: Characterization of the Thyroid Hormone and Retinoid X Receptor . 8 #{149} #{149} #{149} 1 Heterodimeric Binding Site Michael Downes, Russell Griggs, Annette Atkins, Eric N. Olson, and George E. 0. Muscat2 Centre for Molecular Biology and Biotechnology, Ritchie Research Laboratories, University of Queensland, St. Lucia, 4072 Queensland, Australia FM. D., R. G., A. A., G. E. 0. Ml, and Department of Biochemistry and Molecular Biology, M. D. Anderson Cancer Center, University of Texas, Houston, Texas 77030 IE. N. 0.1 Abstract Thyroid hormones are positive regulators of muscle development in vivo. Triiodo-t-thyronine (T3) treatment of myogenic cell lines results in the precocious expression of myogenin, a muscle specific, helix-loop-helix fador that can trans-adivate muscle specific gene expression (G. Carnac et a!., Mol. Endocrinol., 6: 1 1 85-i 1 94, 1 992). We have identified a T3 response element (TRE) in the mouse myogenin (MM) promoter between nucleotide positions -526 and -494 (5’ GTGGTAGGTC1TTAGGGGTCTCATGGGACTGACA 3’). This sequence conferred appropriate hormonal regulation to an enhancerless SV4O promoter. Eledrophoretic mobility shift analysis experiments showed that thyroid hormone receptor a (TRa) and retinoid X receptor a (RXRa) formed a heterodimeric complex on the MM TRE that was specifically competed by classical TREs and not by other response elements. Analyses of this heterodimer with a battery of steroid hormone response elements indicated that the complex was efficiently competed by a dired repeat of the AGGTCA motif separated by 4 nucleotides, as predicted by the 3-4-5 rule. Eledrophoretic mobility shift analysis experiments showed that the myogenin, growth hormone, and myosin heavy chain TREs interaded with an identical nuclear fador(s) in muscle cells that was constitutively expressed during myogenesis. Mutagenesis of the MM TRE indicated that the sequence of the dired repeats (AGGTCA) and the 4-nucleotide gap were necessary for efficient binding to the TRa/RXRa heterodimeric complex. In conclusion, our data suggest that the MM TRE is a target for dired cross-talk between two different hormonal signals (T3 and 9-cis-retinoic acid) at the receptor level. To our knowledge, this is the first identification and charaderization of a hormonal response element in the muscle specific helix-loop-helix family that directly interads with TRa and RXRa. These results indicate that the thyroid hormones, which Received 5/19/93; revised 8/i6/93; accepted 9/2/93. 1 This work was supported by the University of Queensland Mayne Bequest Fund and the National Health and Medical Research Council (NHMRC). G. E. 0. M. is an R. D. Wright Fellow of the NHMRC. 2 To whom requests for reprints should be addressed. are positive regulators of myogenic terminal differentiation, diredly target the hierarchical regulators of myogenesis. Introdudion During embryogenesis, myogenic progenitor cells arise within the somites. These determined cells are committed to a myogenic fate; however, they do not express a contractile phenotype until they receive the appropriate environmental signals. In tissue culture, proliferating mononucleated myo- blasts exit the cell cycle and differentiate into postmitotic multinucleated myofibers that express muscle specific phe- notypic markers. Proliferation and differentiation are mutu- ally exclusive events regulated by a balance of antagonizing cellular signals. The recent characterization of the MyoD gene family (MyoD, myogenin, Myf-5, MRF-4!myf-6! herculin) of HLH3 proteins, which inhibit cell proliferation and trans-activate directly/indirectly a multitude of contrac- tile genes, has provided insight into this system. This gene family functions at the nexus of command circuits that con- trol the mutually exclusive events of division and differen- tiation. The expression/function of the HLH proteins and subsequent contractile protein transcription are suppressed by growth factors and oncogenic signals that promote cell division (1-3). TheMyoDfamilyofhierarchical regulatory proteins direct the fate of pluripotential mesodermal embryonic cells and indirectly/directly activate muscle specific genes involved in terminal differentiation and contraction. The members of the MyoD family have the ability to autoregulate their own ex- pression and cross-activate one another’s expression in cul- tured cells. This mechanism amplifies the expression of these factors above an activation threshold and provides stability to the myogenic program (i-3). These proteins contain a 68-amino acid conserved basic!myc-like region that is nec- essary and sufficient for myogenic conversion. The basic region and adjacent HLH motif mediate DNA binding and dimerization. The MyoD family forms heterodimers with 3 The abbreviations used are: HLH, helix-loop-helix; T, 3,5,3’-triiodo--thy- ronine; TR, thyroid hormone receptor; DR, direct repeat; PAL, palindromic repeat; RXR, retinoid x receptor; RA, retinoic acid; COUP-IF, chicken ov- albumin upstream promoter transcription factor; MM, mouse myogenin; IRE, thyroid hormone response element; a-MHC, a-myosin heavy chain; EMSA, electrophoretic mobility shift analysis; GH, growth hormone; r-, rodent; h-, human; c-, chicken; CRBP I, cellular retinol binding protein I; RARE, RA response element; MEF, myocyte enhancer factor; SRE, serum response el- ement; PPAR, peroxisome proliferator activated receptor; VDR, vitamin D receptor; RAR, RA receptor; MI, myotube; CAT, chloramphenicol acetyltrans- ferase; CMV, cytomegalovirus; DMEM, Dulbecco’s modified Eagle’s medium; FCS, fetal calf serum; DOTAP, N-Il -(2,3-dioleoyloxy)propyll-N,N,N- trimethyl ammonium-methylsulfate; HEPES, 4-(2-hydroxyethyl)-i -pipera- zineethanesulfonic acid; PMSF, phenylmethylsulfonyl fluoride; EGTA, ethyl- eneglycol bis(f3-aminoethyl ether)-N,N,N’,N’-tetraacetic acid.
Transcript
  • Vol. 4, 90 1-909, November 1993 Cell Growth & Differentiation 901

    Identification of a Thyroid Hormone Response Elementin the Mouse Myogenin Gene: Characterization ofthe Thyroid Hormone and Retinoid X Receptor

    . 8 #{149} #{149} #{149} 1Heterodimeric Binding Site

    Michael Downes, Russell Griggs, Annette Atkins,Eric N. Olson, and George E. 0. Muscat2

    Centre for Molecular Biology and Biotechnology, Ritchie ResearchLaboratories, University of Queensland, St. Lucia, 4072 Queensland,Australia FM. D., R. G., A. A., G. E. 0. Ml, and Department of

    Biochemistry and Molecular Biology, M. D. Anderson Cancer Center,

    University of Texas, Houston, Texas 77030 IE. N. 0.1

    Abstract

    Thyroid hormones are positive regulators of muscledevelopment in vivo. Triiodo-t-thyronine (T3) treatmentof myogenic cell lines results in the precociousexpression of myogenin, a muscle specific,helix-loop-helix fador that can trans-adivate musclespecific gene expression (G. Carnac et a!., Mol.Endocrinol., 6: 1 1 85-i 1 94, 1 992). We have identified aT3 response element (TRE) in the mouse myogenin (MM)promoter between nucleotide positions -526 and -494(5’ GTGGTAGGTC1TTAGGGGTCTCATGGGACTGACA3’). This sequence conferred appropriate hormonalregulation to an enhancerless SV4O promoter.Eledrophoretic mobility shift analysis experimentsshowed that thyroid hormone receptor a (TRa) andretinoid X receptor a (RXRa) formed a heterodimericcomplex on the MM TRE that was specifically competedby classical TREs and not by other response elements.Analyses of this heterodimer with a battery of steroidhormone response elements indicated that the complexwas efficiently competed by a dired repeat of theAGGTCA motif separated by 4 nucleotides, as predictedby the 3-4-5 rule. Eledrophoretic mobility shift analysisexperiments showed that the myogenin, growthhormone, and myosin heavy chain TREs interaded withan identical nuclear fador(s) in muscle cells that wasconstitutively expressed during myogenesis. Mutagenesisof the MM TRE indicated that the sequence of thedired repeats (AGGTCA) and the 4-nucleotide gap werenecessary for efficient binding to the TRa/RXRaheterodimeric complex. In conclusion, our data suggestthat the MM TRE is a target for dired cross-talk betweentwo different hormonal signals (T3 and 9-cis-retinoicacid) at the receptor level. To our knowledge, this is thefirst identification and charaderization of a hormonalresponse element in the muscle specific helix-loop-helixfamily that directly interads with TRa and RXRa.These results indicate that the thyroid hormones, which

    Received 5/19/93; revised 8/i6/93; accepted 9/2/93.

    1 This work was supported by the University of Queensland Mayne Bequest

    Fund and the National Health and Medical Research Council (NHMRC).G. E. 0. M. is an R. D. Wright Fellow of the NHMRC.2 To whom requests for reprints should be addressed.

    are positive regulators of myogenic terminaldifferentiation, diredly target the hierarchical regulatorsof myogenesis.

    Introdudion

    During embryogenesis, myogenic progenitor cells arisewithin the somites. These determined cells are committed toa myogenic fate; however, they do not express a contractilephenotype until they receive the appropriate environmentalsignals. In tissue culture, proliferating mononucleated myo-blasts exit the cell cycle and differentiate into postmitoticmultinucleated myofibers that express muscle specific phe-notypic markers. Proliferation and differentiation are mutu-ally exclusive events regulated by a balance of antagonizing

    cellular signals. The recent characterization of the MyoDgene family (MyoD, myogenin, Myf-5, MRF-4!myf-6!herculin) of HLH3 proteins, which inhibit cell proliferationand trans-activate directly/indirectly a multitude of contrac-tile genes, has provided insight into this system. This genefamily functions at the nexus of command circuits that con-trol the mutually exclusive events of division and differen-tiation. The expression/function of the HLH proteins andsubsequent contractile protein transcription are suppressedby growth factors and oncogenic signals that promote celldivision (1-3).

    TheMyoDfamilyofhierarchical regulatory proteins direct

    the fate of pluripotential mesodermal embryonic cells andindirectly/directly activate muscle specific genes involved in

    terminal differentiation and contraction. The members of theMyoD family have the ability to autoregulate their own ex-pression and cross-activate one another’s expression in cul-tured cells. This mechanism amplifies the expression of thesefactors above an activation threshold and provides stabilityto the myogenic program (i-3). These proteins contain a68-amino acid conserved basic!myc-like region that is nec-essary and sufficient for myogenic conversion. The basicregion and adjacent HLH motif mediate DNA binding anddimerization. The MyoD family forms heterodimers with

    3 The abbreviations used are: HLH, helix-loop-helix; T�, 3,5,3’-triiodo-�-thy-

    ronine; TR, thyroid hormone receptor; DR, direct repeat; PAL, palindromicrepeat; RXR, retinoid x receptor; RA, retinoic acid; COUP-IF, chicken ov-albumin upstream promoter transcription factor; MM, mouse myogenin; IRE,thyroid hormone response element; a-MHC, a-myosin heavy chain; EMSA,

    electrophoretic mobility shift analysis; GH, growth hormone; r-, rodent; h-,human; c-, chicken; CRBP I, cellular retinol binding protein I; RARE, RAresponse element; MEF, myocyte enhancer factor; SRE, serum response el-

    ement; PPAR, peroxisome proliferator activated receptor; VDR, vitamin Dreceptor; RAR, RA receptor; MI, myotube; CAT, chloramphenicol acetyltrans-

    ferase; CMV, cytomegalovirus; DMEM, Dulbecco’s modified Eagle’s medium;FCS, fetal calf serum; DOTAP, N-Il -(2,3-dioleoyloxy)propyll-N,N,N-

    trimethyl ammonium-methylsulfate; HEPES, 4-(2-hydroxyethyl)-i -pipera-zineethanesulfonic acid; PMSF, phenylmethylsulfonyl fluoride; EGTA, ethyl-

    eneglycol bis(f3-aminoethyl ether)-N,N,N’,N’-tetraacetic acid.

  • 902 Identification of IRE in Mouse Myogenin Gene

    ubiquitously expressed members ofthe HLH protein family,

    such as El 2 and E47 (the alternatively spliced products of theE2A gene). The MyoD-E2A heterodimers bind to a consen-sus DNA binding sequence, the E-box motif which includesa CANNTG motif, present in most muscle specific enhanc-ers. The individual muscle specific HLH proteins show dis-tinct half-site preferences for binding that depend on thevariable nucleotides within and surrounding the invariantdyad symmetry of the E-box motif (1-3).

    The expression and function of these hierarchical regu-lators is repressed by growth factors and oncogene products[fibroblast growth factor, transforming growth factor j3, pro-liferin, Ela, Src, Fps, Ras, Myc, Fos, and Jun (summarizedand discussed in Ref. 2)]. These agents act by (a) repressionof MyoD mRNA accumulation and protein synthesis, (b)regulation of MyoD activity/function, or (c) suppression ofmyogenic specific trans-acting factors that positively regu-late the expression of myogenin and MRF-4, which are ex-pressed only after terminal differentiation (2).

    Very little is known about the growth factors and hor-mones that act as positive regulators of the MyoD family(with respect to their transcription and function) and asstimulators of differentiation. Thyroid hormones are amongthe known activators of in vivo muscle development. Thy-roid hormones exert marked effects on cardiac and skeletalmuscle. T3 increases myocyte size, total RNA, and protein

    synthesis. This results in a substantial reorganization of themyocyte, which, in turn, alters contractile protein perfor-

    mance and ion transport. Hyper- and hypothyroidism resultin increases and decreases, respectively, in heart rates, car-diac output, and the velocity of shortening of unloadedmuscle. In skeletal muscle, hyper- and hypothyroidism, re-spectively, result in a precocious and retarded developmentof fast contractile protein gene expression. Hypothyroidismresults in a decrease in muscle mass and a reduced numberof myofibers (2, 4-1 1 ). Thyroid hormone regulates the tran-scription of a number of contractile protein genes [skeletaland cardiac ct-actin, cardiac and skeletal myosin heavychain genes, atrial natriuretic factor, sarcolemmal calciumATPase, fast and slow sarcoplasmic calcium ATPases, car-bonic anhydrase Ill, the neural cell adhesion molecule, andthe adrenergic receptors in ventricular cardiocytes (1 0-i 7)].Furthermore, T3 promotes terminal muscle differentiation,positively regulates MyoD, and induces the premature ex-pression of myogenin (6).

    The effects of thyroid hormones are mediated by the in-tracellular TRs, which are encoded by two distinct genes,c-erbA-a and c-erbA-�3. The c-erbA-ct gene is alternativelyspliced into a1 and a2 (hormone and non-hormone binding)isoforms, respectively. The a-isoform of the receptor is mostabundant in heart and skeletal muscle, central nervous sys-tem, and kidney. Intriguingly, the c-erbA-a locus has alsobeen demonstrated to contain an overlapping transcriptionunit utilizing coding information on the opposite strand (rev-erb) (1 8, 1 9). The a2 and rev-erb isoforms seem to regulatethefunction ofc-erbA-a1 . The c-erbA-a1 and a2 isoforms areconstitutively expressed during mouse myogenesis (6). TRsbind to response elements containing tandem direct (anddegenerate) repeats of the AGGTCA N,, AGGTCA motif,with spacings of 3 or 4 nucleotides, and activate gene tran-scription (20-25). TR requires accessory/auxiliary factorspresent in nuclear extracts for high affinity binding to their

    cognate sequences (26-28). The RXR family is one of theseaccessory proteins (20, 24-31 ). RXR is activated by 9-cis-RA.The RXRs heterodimerize with TRs and function to selec-

    tively target the high affinity binding of these receptors to

    their cognate elements (20, 24, 25). These effects requiretwo distinct hormones and suggest direct cross-talk be-tween 9-cis-retinoic acid (32, 33) and many different hor-monal signals, implicating RXR as having a central role inmodulating thyroid hormone signaling pathways. Othernuclear proteins, such as the T3 receptor auxiliary protein,stabilize the binding of TR to DNA (26-28, 31-33). Fur-thermore, the stability of these homodimeric and heterodi-meric receptor complexes is regulated by ligand availabil-ity (34, 35). Recently, more elaborate control of thispathway has been suggested by the observation thatCOUP-TF, a dopamine regulated receptor, can regulatethe binding of these heterodimers by competitive bindingto their cognate sequences and/or formation of nonfunc-tional heterodimers (36).

    The majority of the studies investigating T3 effects onmuscle did not distinguish between the direct and indirecteffects of the hormone. Direct effects in skeletal muscle areclouded byT3 regulation ofgrowth hormone and insulin-likegrowth factor production and central nervous system matu-ration and innervation, which regulate muscle maturation(4, 5, 36). Whether T3 directly regulates the overall growth

    of skeletal muscle at the level of transcription has not beendemonstrated conclusively. To further understand the role ofT3 in growth, we investigated whether TR and RXR directlytargeted myogenin or whether they modulated trans-actingfactors that regulated the precocious transcription after T3treatment.

    Results

    The Retinoid X and Thyroid Hormone Receptors Form Het-erodimers That Bind with High Affinity to the Mouse Myo-genin TRE. It has been previously demonstrated that T3treatment of myogenic cell lines resulted in elevated expres-sion of MyoD mRNA and the precocious expression of myo-genin mRNA, which encode tissue specific helix-loop-helixregulatory proteins (6).

    We scanned the MM promoter for a putative TRE. Usingthe core binding motif, PuGGT,’ACA!G, we identified a pu-tative MM TRE between nucleotide positions -526 and -494(5 I GTGGTAGGTC1TrAGGGGTCTCATGGGACTGACA3’). This putative TRE sequence was arranged as a directrepeat ofthe core binding motifwith a 4-nucleotide gap andwas accommodated by the tandem direct repeat model (3-4-5 rule) proposed by Evans and Rosenfeld (22, 23). Wecharacterized the MM TRE between nucleotide positions-526 and -494 by demonstrating that it bound heterodimersof the thyroid hormone and retinoid X receptor with highaffinity.

    A large body ofevidence (17, 20-25, 31 , 37, 38) indicates

    that the heterodimer rather than the homodimer is the entitythat recognizes functional TREs. We investigated the abilityof bacterially expressed thyroid hormone and retinoid X re-ceptors (TRa and RXRa) to interact with the putative myo-genin TRE. We used the well characterized a-MHC TRE asa heterodimerization control; three groups (1 7, 24, 38) havedemonstrated that RXR heterodimerizes with TR and mark-edly enhances the binding to the a-MHC TRE. EMSA wasused to evaluate the homodimeric and heterodimeric bind-ing of RXRa and TRce to the MM TRE. Increasing amounts(1 .5, 4.5, and 1 3.5 pmol) of RXRa and TRa were incubatedwith fixed quantities ofthe MM TRE and the defined a-MHCTRE (Fig. 1 ). These data demonstrate that TRa in pmol quan-tities did not interact with the MM TRE; however, addition

  • Probe a-MHC ThE MM .5261-494 TRE

    I 11pMolTRa . . . 1.54.513.54.5 . . . 1.54.513.54.5

    pMoI RXRa ii 4.5 13.5 . . . 4.5 1.5 4.5 13.5 - - - 4.5

    H_._�.. ==� ID-* a.

    � .4W, 1

    SRE GAAGGGGACCAAATAAGGCAAGGTG

    �AAMAMA

    Fig. 2. A, the TREs in the MM promoter and from a number of other char-acterized genes. The synthetic direct repeat response elements based on the3-4-5 rule are also depicted. The sequences of one strand of each doublestranded oligonucleotide probe are shown. Solid arrows, direction and lo-

    cation ofthe TREs; dashedarrow, location ofa weak IRE in the MM oromoter.These sequences match the core sequence binding motif for the thyroid her-

    mone receptor: c/AcGT/AcA/(�. PAL-O is a palindromic/inverted repeat ar-

    rangement of motifs that confers a transcriptional response to RXR, TR, and

    RAR. CRBPIis a RARE in the cellular retinol binding protein I. MEF-!, niyocyte

    enhancer factor 1 ; MEF-2, myocyte enhancer factor 2; SRE, serum responseelement. The nucleotide positions are indicated with respect to the transcrip-tional start site at + 1 . B, the MM IRE interacts with TRCS/RXRO heterodimerin a sequence specific fashion. The effect of competition 10-60-fold molar

    excesses), by the DR-2, GH, MHC, PAL-0, DR-4, and RARE characterizedresponse elements and various other nonhormonal DNA binding sites (MEF-l,MEF-2, SRE) on the complex formed between the probe MM -526/-494 IREand the TRa/RXRa heterodimer. The molar excess of each DNA competitor

    is indicated. C, the control binding reaction in the absence of any unlabeledcompetitor.

    Cell Growth & Differentiation 903

    A� -8� -8’ --�I MM -524/-496 gatcGTGGTAGGTCTTTAGGGGTCTCATGGGAC

    rGH -190/-166

    rMHC-127/-159

    -� -� �-

    -� -� �-

    -� �-PAL-0 gatcTCAGGTCATGACCTGA

    -� -�

    mCRBPI -1016/-989 TTAGTAGGTCA.AAAGGTCAGACACTGAA

    -� -�DR-2 gatcAGG?CAggAGGTCA

    -� -�DR-4 gatcAGG?CAcaggAGGTCk

    MEF-1

    MEF-2

    CCCCCCCAA�ACc.T�CTGCCTGAGCC

    GCCCCATATATCAGTGATATAAATAGAACCTGCAG

    k��kk ,LAg�ALA= = LA.1g�M=���� .,g

    � -

    Fig. 1. The thyroid hormone and retinoid X receptors form heteromericcomplexes on the cs-MHC and MM TREs. F. coli expressed and affinity pu-

    rified cTRo and hRXRo were incubated with the a-MHC and MM IRE. M,D, and H denote the monomeric, dimeric, and heterodimeric complexes,respectively.

    of equivalent amounts of RXRt induced heterodimerization

    and markedly enhanced binding of the receptor complexesto their cognate sequences similar to the a-MHC TRE het-

    erodimerization control (Fig. 1 ). The data here suggest thatRXR may play an important role in modulating TR interac-

    tion with this sequence. These findings raise the possibilitythat the MM TRE (-526/-494) may be a site for direct cross-talk between two different hormonal signals (9-cis-RA and

    T3) at the receptor level. Homodimeric complexes of eachreceptor were only observed on the MM TRE with greater

    than nmol amounts of receptor (data not shown).

    The Interaction of the TR and RXR Heterodimer with theMouse Myogenin TRE (-5261-494) Is Specifically Com-

    peted by the rGH, a-MHC, and PAL-O TREs. We conductedEMSA competition studies using the classical and well char-

    acterized natural rGH and cr-MHC and the synthetic PAL-0and DR-4 TRE sequences to assess the sequence specific

    binding of the TRY/RXRO heterodimer to the MM (-526/-494) sequences. The sequences of the oligonucleotides

    used in this study are listed in Fig. 2A, with the TRE orien-

    tations defined by arrows. The competition studies were car-ned out at 1 0- and 60-fold molar excesses of oligonucleotidewith respect to the myogenin TRE -526/-494 probe (Fig.

    28). These studies demonstrate that the complex formed be-tween the -526/-494 sequences and TRZ/RXRa het-

    erodimer could be specifically competed by a wide variety

    of established characterized wild-type and synthetic TREs(which have been demonstrated to interact with heterodi-

    meric receptor complexes). However, the CRBP I RARE,

    MEF-l and -2 (binding sequences which are integral com-ponents of all muscle specific enhancers and interact withmuscle specific helix-loop-helix and MADS box transcrip-tion factors), and SRE did not compete for the formation of

    the heterodimeric complex on the TRE. These results mdi-

    B) Probe: MM .52�/494 TREReceptor Thyroid Hormone and Rettnoid x Receptor HeterodimerCompetitor .sas4a� DR.2 rn_H MHC PAL.0 DR.4 RARE MEF.1 MEF-2 SREMolarExcess cioeoio�io�ioeoioooio�c cio�io�ioaoio�c

    . . . . .

    �. �*w� � � �

    cate that the -526/-494:TRa:RXRa interaction was highlyspecific and involved in the triiodo-F-thyronine signalingpathway.

    Direct Repeats of the Sequence PuGGTCA N,, PuGGTCAwith Spacings of 4 and 5 Specifically Competed the For-mation of the TRa/RXRa Heterodimer on the MM IRE. Afunctional relationship among the RXR, PPAR, COUP-TF,VDR, TR, and RAR has recently been described in whichthese receptors bind and activate through direct repeats ofthe AGGTCA motif separated by 1 , 2, 3, 4, and 5 nucleo-tides, respectively (x = 1 and 2, also binds RXR and RAR) (23,37). This rule applies to most of the natural hormone re-sponse elements. In an effort to further characterize the MM

  • A)

    -� -�

    DR- 1 ga t cAGGTCAgAGGTCA

    -� -�

    DR-2 gatcAGGTCAggAGGTCA

    -� -�

    DR- 3 gatcAGGTCkaggAGGTCk

    -� -�

    DR- 4 gatcAGGTCAcaggAGGTCA

    -�

    DR- 5 gatcAGGTCAccaggAGGTCA

    B) Probe:Receptor:Competitor:Molar Excess:

    Fig. 3. A, The synthetic direct repeat response elements based on the 3-4-5rule are depicted. The sequences of one stran(l of each double stranded oh-gonucleotide probe are shown. Solid arrows, direction and location of the

    TREs. DR.1, DR-2, DR-3, DR-4, and DR-5 are arranged as direct repeats ofthe AGGTCA motif with spacings of 1 , 2, .3, 4, and S nucleotides. A functionalrelationship among the RXR, VDR, TR, and RAR has recently been described

    inwhich these receptors bind and activate through tandem direct repeatsAGGTCA N AGGTCAwiIh spacingof 1, 3, 4, and S nucleotides, respectively)x - 2 mediates a positive response to RA and negative response to I,). 8,the MM IRE interacts with TRa/RXRa heterodimer and was preferentially

    (onipeted by direct repeats with a 4- or 5-nucleotide gap. The effects ofdornpetition by a battery of hormone response elements. designated DR-i,DR-2, DR-3, DR-4, and DR-S 01) the complex formed between the MM IRE

    probe and TRa/RXRo. The molar excess ofeach DNA competitor is indicated.F, the control binding reaction in the absence 01 any unlabeled competitor.

    904 Identitication 01 IRE in Mouse Myogeiiin Gene

    MM IRE

    Thyroid Hormon#{149}and Ritlnold X Hetorodimar

    DR-I DR.2 DR-3 DR.4 DR.5

    do eoio eoio eoio eoioeo C

    ��WWWa.�.a4 � w

    TRE:TRa/RXRct complex, we synthesized an array of syn-thetic hormone response elements as predicted by the 3-4-5rule, arranged as direct repeats of the AGGTCA motif withspacings of 1 , 2, 3, 4, and 5 nucleoticles (designated DR-i,DR-2, DR-3, DR-4, and DR-5, respectively, as described inRef. 35; Fig. 3A).

    We tested these hormone response elements in EMSAcompetition assays to assess the specificity and gap/spacingpreference ofthe TRct:RXRs heteromeric binding to the MM-526/-494 element. DR-i, DR-2, DR-3, DR-4, and DR-S(37) were used in the binding reactions at 10- and 60-foldmolar excesses with respect to the MM -526/-494 probe(Fig. 38). These data indicated that DR-4 > DR-S > DR-3preferentially competed for the formation of the TRa/RXRtheterodimeric complex on the MM TRE. DR-i and DR-2

    sequences did not compete. These experiments rigorouslydemonstrated that the TRct and RXRa heterodimer complexon the MM TRE was selectively competed by direct repeatsof the AGGTCA half-site motif separated by 4 nucleotidesand provided strong evidence thatthe -526/-494 sequencesfunctioned as a TRE site according to the 3-4-S rule. Thisanalysis was analogous to the work of Umesono et al. (23),which showed that DR-4 > DR-5 > DR-3 preferentially

    competed for the formation of the TRI3 heteromeric complexon a sequence that functioned as a TRE in transfection stud-es.

    Nuclear Extracts from Differentiated Myogenic CellsForm a Complex with the MM TRE That Is Specifically Com-peted by the Wild-Type rGH and a-MHC TREs. EMSA (38)was used to determine that the MM TRE interacted with anuclear factor in vitro. Nuclear extracts were prepared frommouse myogenic C2C1 2 myoblasts and myotubes in differ-ent stages ofdifferentiation to assay the developmental regu-lation ofTRE bound proteins in muscle. Specifically, extractswere isolated from proliferating myoblasts, confluent myo-blasts, and myotubes (MTi and MT4;l and 4 days after mi-togen withdrawal, respectively). These extracts were as-sayed for the levels of Oct-i , which is a constitutively

    expressed factor used to standardize the amount of nuclearextracts used in the experiments (Fig. 4). The amount ofMEF-2 protein (39, 40), which is a differentially expressedfactor, was also measured in the nuclear extracts. This dem-onstrated the pattern of expression of a nuclear factor knownto be differentially regulated in these cells and verified thedevelopmental stage of these extracts (data not shown).

    In the EMSA experiment, the MM TRE oligonucleotidespecifically interacted with a factor(s) in mouse myogeniccells. The protein(s) which interacted with the MM -526/-494 sequence is a constitutively expressed factor (Fig. 4).The rGH and a-MHC TREs and the CRBP I RARE and MEF-iwere utilized in EMSA competition experiments to analyzethe myogenic factors interacting with this sequence. TheMM TRE:myogenic factor complex was shown to be spe-cifically competed by self-competition and by the rGH anda-MHC TREs. However, the MEF-l and RARE oligonucleo-tides did not compete for the binding ofthis complex. Theseresults were compatible with the interaction of the MM TREwith purified TRa.

    Mutagenesis of the MM TRE Identifies the PuGGTCA Mo-tifs as Essential TRa/RXRa and Myogenic Fador BindingSites. We characterized the nucleotides in the MM TRE thatinteracted with cTRa and RXRa heterodimer and the myo-genic factors by mutating the MM TRE sequentially from the5’ to 3’ direction by nine triplet changes that spanned thethree half-site motifs. These mutant TREs were designatedMi-M9 (see Fig. SA) and used in EMSA competition analy-ses to ascertain their ability to disrupt the complexes formedbetween the MM TRE and TRct/RXRa heterodimer. We in-dependently incubated wild-type MM TRE (-526/-494)probe with cTRa/RXRa heterodimer (Fig. SB) and competedwith 1 0- and 60-fold molar excesses ofthe Mi , M2, M3, M4,MS, M6, M7, M8, and M9 mutant TREs. Fig. SB depicts theability ofthe mutant MM TRE oligonucleotides, Ml-M9, tocompete for binding to the heterodimer relative to the wild-

    type sequence. The mutant MM TREs Ml , M4, M7, and M8

    competed efficiently for binding to the TRZ/RXRa het-erodimer. This demonstrated that the sequences flanking thedirect repeats and the sequence ofthe 4-nucleotide gap werenot important for binding to the complex. In contrast, M2,M3, MS, and M6 TREs did not compete for binding to the

  • .5261494 (;H TRE �1II(’ � KARl;

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    Cell Growth & Differentiation 905

    Fig. -I. The MM IRE sequence

    interacts with constitutively cx-

    pressed tactors in myogenic cx-tracts that are specifically com-

    peted by thyroid hormoneresponse elements. PMB andCMB, extracts derived from prolif-crating and confluent mynhlasts.MT-t and MT-4, extracts derivedfroni myotubes, 1 and 4 days after

    mitogen withdrawal. Oct-i, a fac.

    tor that is constitutively expressed

    and) unaffected by the mitotic stateof the cell. The eftect of competi-

    tion 10-60-bid molar excesses),))y the GH and MHC character-ized TREs, and the CREW I RARE

    on the complex formed betweenthe MM IRE probe and myogenictactors. The molar excess of eachDNA compelitor is inr)icated. C,the control binding reaction inthe absence ol any unlal)eledCOI11l)etitor. MEF- 1, myocyte en-

    hancer factor 1.

    l’robc �-.Oct-I,

    (ompetitor

    �1oIar Eitcess

    Extract �

    -

    �S26I-494 MEF-I

    10 20 60 10 20 60

    heterodimeric complex. These data strongly reinforced therole of the direct repeats and the importance of the half-sitesequence in complex formation. The mutant M9, which hadan 8-nucleotide gap between the wild-type direct repeats,did not compete for binding, demonstrating that the correctgap spacing was crucial to efficient complex formation (Fig.SB). Similar results were observed when the mutant oligo-nucleotides were used in EMSA competition with the myo-genic extracts (data not shown).

    Sequences between Nucleotide Positions -526 and -494in the Mouse Myogenin Promoter Confer T3 Regulation toan Enhancerless Simian Virus 40 Promoter. In general, for-mation of TR/RXR heterodimers that strongly and selectivelyinteract with a target sequence correlate with a functional T5dependent trans-activation in vivo. Transfection studieswere carried out to investigate whether the native mousemyogenin promoter was responsive to triiodo-L-thyronine.For this purpose, we used the construct pMYO7O4CAT,which contained the native mouse myogenin promoter (41)linked to the CAT gene. This plasmid contained the cis-acting sequences between nucleotide position -704 and+41 in the myogenin promoter. When transfected into

    COS-1 cells grown in thyroid hormone and retinoid deficientmedium in the presence of cotransfected TRct expressionvector (pCMV-TRs) or RXRa expression vector (pCMX-RXRs), the CAT activity from pMYO7O4CAT was increased4-6-fold after T1 treatment in the presence of TRa. In con-trast, 9-cis-RA in the presence of RXRs did not result in anysignificant induction of CAT activity. The activity frompMYO7O4CAT was low and was not increased after T4 treat-ment in the absence of cotransfected TRa (data not shown).These transfections demonstrated that the sequences be-tween nucleotide positions -704 and +4i in the mousemyogenin promoter are capable of mediating T5 dependenttrans-activation of CAT expression in a receptor dependentmanner.

    An important question to address is whether the synergismobserved in strong and specific heterodimeric binding be-tween TR and RXR on the MM TRE can be directly correlatedwith the trans-activation activity ofthe heterodimers on theirfunctional response element in vivo. We cloned the -526/-494 region into an enhancerless SV4O promoter (pCATpromoter-I); Promega) and conducted experiments to see

    whether the putative MM TRE conferred appropriate hor-monal regulation to a heterologous promoter. The oligo-nucleotide was cloned as a single copy in the correct on-entation upstream of the SV4O promoter in the pCATpromoter plasmid (pMM-TRE-CAT-p). When transfectedinto CV-i cells grown in thyroid hormone and retinoid de-ficient medium in the presence of cotransfected TRct alone,the MM TRE sequences conferred a -4-fold induction afterT3 treatment to the enhancenless SV4O promoter in a recep-tor dependent manner (Fig. 6, Lanes 5 and 6). The MM TREsequences did not show any significant induction in thepresence of RXRt alone and RA above that mediated by thebasal vector, pCAT-p, alone (Fig. 6, Lanes 3 and 4 versusLanes 7 and 8). The T3 response was minimally increased,and the absolute CAT activity was increased by cotransfec-tion of RXRs. These results confirmed that the cis-actingregion between nucleotide positions -526 and -494 func-tions as a positively acting TRE in the muscle specific mousemyogenin promoter (Fig. 6, Lanes 9 and 10).

    This scenario is analogous to the malic enzyme TRE stud-ies demonstrating that it was a very efficient binder of TRa/RXRa heterodimers, conferred a 3.5-fold trans-activation toa heterologous promoter after T3 treatment in the presenceof TR, but did not function as a more effective functionalresponse element for the TR/RXR heterodimen in the contextof TR/RXR cotransfection experiments (38). These data werealso consistent with previous observations that demon-strated that some response elements (e.g., PAL-0) requireparticular receptor isoform combinations for efficient tran-scriptional activation in cell culture. We are currently ex-amining these options since all RXR isoforms (co-, f3-, and -y-)are expressed in muscle tissue (TRI3 is not expressed) (30).

    Discussion

    T3 has been shown to promote terminal muscle differentia-tion in vivo, positively regulates MyoD, and induces the pre-mature expression of myogenin mRNA in myogenic culture(6). In the present study, we have shown that the mousemyogenin promoter is regulated by � and that the cis-actingsequences between nucleotide positions -704 and +41were required for T jFR mediated -=5-fold trans-activation ofCAT expression. These data indicated that the � influenced

  • A)-*. N� -a-

    WI LD TYPE �C - 52 6 1 - 4 94 ) CACCATCCAGAAATCCCCAGAGTACCCTGACTGT

    Ml GTAAAAGGTCTTTAGGGGTCTCATGGGACTGACA

    CATTTTCCAGAAATCCCCAGAGTACCCTGACTGT

    M2 GTGGTTTTECTTTAGGGGTCTCATGGGACTGACA

    CACCAAAMGAAATCCCCAGAGTACCCTGACTGT

    M3 GTGGTAGGAAATTAGGGGTCTCATGGGACTGACA

    CACCATCCT?TAATCCCCAGAGTACCCTGACTGT

    M4 GTGGThGGTCTCA000GGTCTCATGGGACTGACA

    CACCATCCAGAGTCCCCCAGAGTACCCTGACTGT

    MS GTGGTAGGTCTTTAGTTTTCTCATGGGACTGACACACCATCCAGAAATCA�AAGAGTACCCTGACTGT

    M6 GTGGTP�GGTCTTTAGGGGAAACATGGGACTGACACACCATCCAGAAATCCCC???GTACCCTGACTGT

    Ml GTGGTAGGTCTTTA0000TCTTIAGGGACTGACA

    CACCATCCAGAAATCCCCAGSAATCCCTGACTGT

    MO GTGGTAGGTCTTThG000TCTCATTTTACTGACA

    M9 GTGGTAGGTCTTTAGCAOGGGGTCTCAT000ACTG

    CACCATCCAGAAATCG?�CCCAGAGTACCCTGAC

    B) Probe: MM IREReceptor Thyroid Hormone and Retinold X Receptor Heterodimer

    Competitor .5215494 Ml � i� i&� t�s us �i �s yeMolarExcess c1s�i1o�o1s#{248}1oo1o�o1o�o c C 1I�I1C�I1O6O iO6OC

    .4 ...4�.. . S. � �

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    CACCATCCAGAAATCCCCAGAGTAAAATGACTGT

    V IV ‘ ‘ � VI)

    Fig. 5. A, pictorial representation ofthe various site specific mutations in the

    mouse myogenin IRE. The wild-type IRE sequence is depicted, and the mu-

    tations in the Mi , M2, M3, M4, M5, M6, M7, M8, and M9 TREs are denotedby bold text. B, mutational analyses of the mouse myogenin TRE. The corereceptor binding motifs in the MM -5261-494 IRE are important for binding.The effects of competition by a battery of mutations in the MM IRE, designated

    Mi , M2, M3, M4, M5, M6, M7, M8, and M9 on the complex formed betweenthe MM IRE probe and TRa/RXRa heterodimer. The molar excess of each

    DNA competitor is indicated. C, the control binding reaction in the absenceof any unlabeled competitor.

    induction of myogenin mRNA in myogenic cell lines in-volves transcriptional mechanisms. Transfection expeni-ments and EMSA were used to identify a functional TRE inthe mouse myogenin gene. This TRE is located betweennucleotide positions -526 and -494 (5’ GTGGTAGGTCTT-TAGGGGTCTCATGGGACTGACA 3’) and is accommo-dated by the cone receptor binding motif, AGGTCA. ThisTRE sequence conferred a -=4-6-fold induction to an en-hancenless SV4O promoter, after T9 treatment in a TR de-pendent manner. This level of inducibility correlated withthe -4-6-fold trans-activation of the human skeletal a-actinand the rodent sancoplasmic reticulum Ca2� ATPase pro-motens after T3 treatment, which are primarily expressed in

    skeletal and cardiac muscle, respectively.EMSA experiments showed that Escherichia coli

    expressed/affinity purified TRcs and RXRa formed a hetenodi-

    906 Identification of IRE in Mouse Myogenin Gene

    meric complex that bound very efficiently to the MM TRE.This is in agreement with all ofthe recentdata thatdefine theheterodimer rather than the homodimer as the entity thatrecognizes thyroid hormone response elements. Further-more, the TR/RXR complex on the MM TRE was specificallyand selectively competed by other natural and syntheticTREs; in contrast, a natural RARE and the DR-i, DR-2, andDR-3 sequences that interacted with a wide variety ofother steroid receptors (RXR/PPAR, COUP-TF, and VDR)and the MEF-1, MEF-2, and SRE sites did not compete forthe formation of the TR/RXR complex on the MM TRE.These in vitro binding data correlated with the ability ofthese receptors after hormone treatment to trans-activatethe myogenin promoter in vivo, in agreement with a van-ety of other studies.

    Mutagenesis of the MM TRE indicated that direct repeatsof the cone AGGTCA binding motifs and the 4-nucleotidegap were necessary and sufficient for efficient TRZ/RXRahetenodimer formation. Furthermore, the ability of the MMTRE sequences to function in vivo and confer hormonalregulation to a heterologous promoter correlated with theheterodimenic interaction of purified TRa and RXRct withthese sequences in vitro. Heterodimer formation on hor-monal response elements has been previously shown to con-relate with effective transcriptional activation (38).

    The MM TRE interacted with a nuclear factor(s) from myo-genic nuclean extnacts that were specifically competed bythe characterized a-MHC and GH TREs but not by otherDNA elements. Furthermore, these sequences interactedwith a nuclear factor(s) in vitro that was constitutively ex-pressed during the differentiation of mouse myogenic celllines. This correlates with the results ofCannac etal. (6), whoobserved the constitutive expression ofc-enbA-a1 during thedifferentiation of mouse myogenic cell lines. These bindingand competition expeniments with myogenic extracts con-related well with the intenaction ofthe MM TRE with purifiedreceptors in vitro.

    In summary, our experiments have demonstrated that the-526/-494 cis-acting sequence interacts with the hetenodi-menic TR/RXR receptor complex, with high affinity and se-

    quence specificity similar to the well characterized a-MHCTRE. Furthermore, we demonstrated that the direct repeatcone sequences and the 4-nucleotide gap spacing in thiselement wene necessany and sufficient for the formation ofthe heterodimenic complex and that this sequence confennedan appropriate T3 response to a hetenologous promoter. Thissatisfies the criteria that have evolved to define thyroid hon-mone nesponse elements.

    Our experiments suggested that RXRs may modulate theinteraction of TRa to the MM TRE and that the -526/-494sequence in the mouse myogenin gene is a target for dinectcross-talk between two different hormonal signals (T3 and9-cis-RA) at the receptor level. To our knowledge, this is thefirst demonstration of hetenodimenic binding of TRcr andRXRa to a TRE in a helix-loop-helix transcription factor, ex-pressed specifically in skeletal muscle, that trans-activatescontractile protein gene transcription. Our results provide amolecular explanation for the precocious expression ofmyogenin observed after T3 treatment of C2 myogenic cul-tunes and the induction of myogenin transcription by RA inrhabdomyosancoma cell lines (6, 42). Our study, which pro-vides a target for T3 and 9-cis-RA on the myogenin gene,correlates with the appearance of myogen in in the myotomalcompartment of the somites 8.5 days post coitum and RXRin day 1 0 mouse embryos. Furthermore, we have observed

  • I+

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    0 20000 40000

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    C.P.M.

    Cell Growth & Differentiation 907

    4 M. Downes, unpublished observation.

    Fig. 6. Ihe MM IRE confers hor-monal regulation to an enhancer-less SV4O promoter. The mean val-

    ues are shown for the plasmid,pMM-TRE-CAI-p, containing 1

    copy of the MM IRE cloned intothe pCAT promoter construct in

    the correct orientation. Results areshown fortransienttransfections in

    CV-1 cells. Mean values and SDs(bars) were derived from a tripli-cate experiment repeated twice.

    Plasmid

    1. pCAT-p

    2. pCAT.p

    3. pCAT-p

    4. pCAT-p

    5. pMM-TRE-CATp

    6. pMM-TRE-CAT.p

    7. pMM-TRE-CAT-p

    8. pMM.TRE-CAT.p

    9. pMM-TRE-CAT-p

    10. pMM.TRE.CAT-p

    TR RXR 13 RA

    +

    + +

    that myogenin, RXRa, and RXRy mRNA are coordinatelyinduced during C2 differentiation after mitogen with-dnawal.4

    Thyroid hormone levels play a major role in regulatingcontractile protein isoform expression in vivo during adultmuscle development. The effects of thyroid hormone levelsin adult animals are only apparent in long term intoxication.Hypothyroid rat neonates have a reduced number of myo-fibers and a reduced muscle mass. In soleus muscle, T3 treat-ment results in an increase in type II fast fibers, whereashypothyroidism reduces the number of these fibers. In hy-pothyroid rats, expression of adult fast myosin is drasticallyreduced, and neonatal myosin is abnormally high. The de-velopmental program is slowed in hypothyroidism (4, 5).Although c-enbA-a is abundantly expressed in muscle, it wasnot possible to decide whether this is a direct effect of hor-mone action on fiber development on an indirect conse-quence of retardation in the maturation of the central ner-vous system. Recently, it was demonstrated that MyoD andmyogenin mRNAs were stimulated and precociously in-duced by thyroid hormone (6). This provided a molecularbasis for the positive regulation of muscle development, be-cause these muscle specific helix-loop-helix factors trans-activate contractile protein gene transcription. The ques-tions remaining were: (a) whether thyroid hormones viac-erbA-a directly regulate skeletal muscle specific targets;(b) whether they act by regulating transcription factors,which in turn regulate thyroid hormone responsive genes inmuscle; and (c) whether T3 directly targets the MyoD family,which subsequently trans-activates the contractile proteingenes; or whether T3 targets the hierarchical HLH regulatorsand the contractile protein genes simultaneously.

    The skeletal a-actin mRNA, which is part of the thin fila-

    ment in the sarcomene, increases in the adult heart duringcardiac hypertrophy after the imposition of hemodynamicoverload/’aortic restriction. T3 has been shown to cause arapid increase in the amount of skeletal a-actin mRNA inhearts from normal and hypophysectomized animals (Ref.43 and references therein). We recently conducted experi-ments that indicated that T3 induced increases in a-actinmRNA in animals were mediated by direct transcriptionalmechanisms which involved the cis-acting sequences be-tween nucleotides -432/-i 53, c-erbA-a, and interactionswith ubiquitous proteins (SpI, SRF, and NF-i!CTF) (43). Wesubsequently identified a TRE in the human skeletal cx-actingene between nucleotide positions -273 and -249, whichconferred appropriate hormonal regulation to an enhancer-less SV4O promoter. TRa and RXRa interacted with thea-actin TRE in a sequence specific fashion and formed het-eromenic complexes on the a-actin TRE. These data sug-gested that the human skeletal a-actin TRE is a target fordirect cross-talk between two different hormonal signals (T3and 9-cis-RA) at the receptor level (1 7).

    These resutts and the present data with the mouse myo-genin promoter, as well as our previous observations dem-onstrating that skeletal cr-actin was trans-activated by MyoD,myogenin, MRF-4 (44), and MEF-2 (39, 40), firmly suggestthat 13 targets the hierarchical MyoD family of regulatorsand the contractile protein genes simultaneously, and thatfine tuned expression is achieved by the MyoD family andother intermediate regulators such as MEF-2, which arepart of a positive autoregulatory loop that maintains the re-

    quired threshold levels of these muscle specific transcrip-tion factors.

    Materials and MethodsCell Culture and Transfedion. Mouse myogenic C2 cellswere grown in DMEM supplemented with 20% FCS in 1 0%

  • 908 Identification of IRE in Mouse Myogenin Gene

    CO2 as described previously (45). This cell line was inducedto biochemically and morphologically differentiate intomultinucleate myotubes by mitogen withdrawal (DMEMsupplemented with 2% FCS in 10% CO2). Differentiationwas essentially complete within 72-96 h with respect toisoform switching in the actin multigene family (22). How-ever, these cells will spontaneously differentiate at a veryhigh confluence (1 00%) in the presence of mitogens. COS-1cells were grown in DMEM supplemented with 1 0% FCS iniO% CO2.

    Each 60-mm dish of cells was transiently tnansfected with

    S pg of reporter plasmid DNA expressing CAT, mixed with2-3 pg of receptor expression vectors and pUCi 8 plasmidto a total of 1 2 pg in each transfection experiment. Prior totnansfection, the cells were cultured for 24 h in T3 and T4deficient medium containing S% charcoal stripped FCS inDMEM. The DNA mixtures were contransfected into CV-ifibroblasts by the liposome mediated procedure. We usedthe cationic lipid DOTAP. Unilamellan vesicles were formedby mixing the appropriate DNAs with 30-40 p1 of DOTAPand 1 x HEPES buffered saline to a total volume of 200 ml.After a 1 0-mm incubation at room temperature, this mixturewas added to 6 ml of fresh culture (13 and T4 deficient)medium and added to the cells, which were at S0-70% con-fluence. After a period of 20-24 h, fresh medium with onwithout T3 (i0� M) was added to the cells. The cells wereharvested for the assay ofCAT enzyme activity 48 h after thetransfection period. Each transfection experiment was per-formed three times using at least two different plasmid prepa-rations in order to overcome the variability inherent in trans-fections.

    CAT Assays. The cells were harvested, and the CAT ac-tivity was measured as previously described (33). Aliquots ofthe cell extracts were incubated at 37#{176}C,with 0.1-0.4 mCiof [t4Clchloramphenicol (Amensham) in the presence of SmM acetyl CoA and 0.25 M Tnis-HCI, pH 7.8. After a 20-mmto 3-h incubation period, the reaction was stopped by theaddition of 1 ml ethyl acetate, which was used to extract thechloramphenicol and its acetylated forms. The extracted ma-tenials were analyzed on silica gel thin layer chromatographyplates as described previously (33). Quantitation of CAT as-says was performed by an AMBIS �3-scanner.

    Plasmids. The plasmid pCAT promoter (an enhancerlessSV4O promoter linked to CAT in a pUC1 9 backbone) waspurchased from Promega. The plasmid, pCMV-TRa, ex-pressing the rodent c-erbAa gene in the eukaryotic expres-sion vector CMV4, containing the cytomegalovirus pro-moten and SV4O origin of replication, was described by Zilzetal. (46). The plasmid pCMX-hRXRa, expressing the humanRXRa gene in the eukaryotic expression vector pCMX, apCDM 8 derivative containing the cytomegalovmrus pro-moter and SV4O origin of replication, was described byKliewer et al. (20). We constructed pGEX-1 -cTRa by excis-ing the chicken TRa complementary DNA from the pSG5expression vector by EcoRl digestion. This complementaryDNA insert was then cloned in frame into EcoRl cleavedpGEX-1 (1 7). The pGEX-2T-hRXRa was described by Man-gelsdorf et al. (21 ). We constructed pMYO7O4CAT, whichcontained the sequences between nucleotide positions-704 and +41 of the native myogenin promoter, by po-lymerase chain reaction amplification of mouse EMBL 5genomic DNA with the following primers: GMUQ68, GCGAAGCTTCCCAACATCATGAGACCTGGTCA, andGMUQ,69, GCGAAGCTTGTCGGAAAAGGCTTGTrCCT-GCCACTGGCCC. We utilized a 94#{176}C/i-mm denaturation,

    59#{176}C/i-mm annealing, followed by a 65#{176}C!2-min extensionfor 35 cycles. The product was cleaved with Hindlll andcloned into the Hindlll site of pCAT-basic in the senseorientation.

    Oligonucleotides. The sequences of the oligonucleotideprobes used in the EMSA experiments were described in thelegends to Figs. 3A, 4A, and 6A. The sense and antisensestrands of the MM TRE sequences with gate ends were an-nealed, phosphorylated with T4 polynucleotide kinase, andself-ligated with T4 DNA ligase. These products were thencloned into the BgIll site in the pCAT promoter vector (Pro-mega) and initially screened by EcoRl digestion. Clones con-taming putative inserts were sequenced by double strandedsequencing to determine the orientation and number of cop-ies cloned.

    Expression and Purification of Receptors. Human RXRaand chicken TRa were expressed as fusions withglutathione-5-transferase using the pGEX-2T and pGEX-1bacterial expression vectors. BL21(DE3)pLysS cells or DH5acells containing these expression vectors were induced for1-2 h with 0.4 mM isopropyl thiogalactoside after the cellshad grown to an A600 of -0.6. Pelleted cells were lysed; theclarified lysates containing the fusion proteins were loadedonto glutathione-agarose columns in Dignam buffer C (con-taming 0.5 m� PMSF and 2 mg/mI of leupeptin and apro-tinin). After extensive column washing, the fusion proteinwas eluted with Dignam buffer C containing 5 miss reducedglutathione.

    Nuclear Extrads and Gel Mobility Shift Assays. Nuclearextracts were prepared as described previously (45). Briefly,the cells were lysed using 10% Nonidet P-40 following in-cubation in iO m� HEPES (pH 7.9), iO mivt KCI, 0.1 m�iEDTA, 0.i mM EGTA, 1 mt�i dithiothreitol, 0.5 ms,i PMSF, and2 mg/mI ofleupeptin and aprotinin (Boehringer-Mannheim).Nuclear proteins were extracted with 0.4 M NaCl, 20 ms�iHEPES (pH 7.9), i mM EDTA, i mt�i EGTA, 1 mt�i dithio-threitol, 1 mM PMSF, and 2 mg/mI aprotinin and Ieupeptin.

    Each binding mixture (25-30 pI) contained 1-2 ng ofa T4polynucleotide kinase labeled DNA fragment, 1-30 pmol ofpurified receptors or 5-i 0 pg of crude nuclear extract, and1-2 pg of polydeoxymnosmnic-deoxycytidylic acid as a non-specific competitor (only when crude nuclear extract wasused) in Dignam buffer C. The assays were incubated atroom temperature for 20 mm and electrophoresed througha 6% (20:i polyacrylamide:bisacrylamide) gel in 80 m�i Trisborate and 2 m� EDTA. Gels were briefly soaked in 10%acetic acid, dried, and autoradiographed.

    Synthesis of 9-cis-Retinoic Acid. 9-cis-Retinoic acid wasprepared from the aldehyde by reacting with sodium cya-nide over manganese dioxide to produce methyl ester,which was subsequently hydrolyzed to the acid in alcoholicpotassium hydroxide. The product was purified using highperformance liquid chromatography on a C18 column (33).

    AcknowledgmentsWe sincerely thank Dr. Howard lowle for generously providing the rat

    c-erbA-a in the CMV4 expression vector and Dr. Ron Evans for the plasmid,pGEx-2T-hRXRa, which expresses the retinoid x receptor in Escherichia coli.

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  • Cell Growth & Differentiation 909

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