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Integrating tranSMART with Genedata Analyst™Jens HoefkensApril 29, 2014
© 2014 Genedata 2CONFIDENTIAL
Genedata Snapshot
Domain ExpertiseExperienced Ph.D. level experts coupled with efficient software engineering processes
Dedicated to the Life SciencesInnovative portfolio of enterprise systems supporting data rich & complex research processes
Global Reach150+ employees | Offices in Europe (Basel, Munich), North America (Boston, San Francisco) &
Asia (Tokyo)
Marquee Customer BasePharmaceutical, biotechnology, and other life science organizations
RootsEstablished in 1997 | Privately Owned | Headquartered in Switzerland
© 2014 Genedata 3CONFIDENTIAL
Marquee Customers
San Francisco
Munich Basel
Tokyo
19 of Top 20 Pharmas
Boston
5 of Top 6 Agrochemicals
© 2014 Genedata 4CONFIDENTIAL
Genedata Software Portfolio
Genedata Expressionist for Omics Data Management
Genedata Phylosopher
for Translational Medicine
Genedata Biologicsfor Biopharmaceutical R&D
Genedata Selector
for Strain Development
Genedata Analystfor Integrative Statistical Analysis
Genedata Screener for Plate-Based Screening
© 2014 Genedata 5CONFIDENTIAL
Genedata Analyst™
Genedata Analyst™ is
• a Software Platform• for Integrative Analysis• of Multi-omics Data• in Translational Research
© 2014 Genedata 6CONFIDENTIAL
Integration of Analyst with tranSMART
Reduce time to import, export, integrate, and analyze data from days to minutes
© 2014 Genedata 7CONFIDENTIAL
Omics data &
Clinical annotations
• Supports in-depth statistical analysis• Provides out-of-the-box integration with public data sources• Allows cross-study comparisons
© 2014 Genedata 8CONFIDENTIAL
Omics data &
Clinical annotations
• Provides technology-specific preprocessing and QC• Comprehensive technology and platform coverage• Integration with study management systems & ontologies• Extendable to new and emerging technologies & platforms
© 2014 Genedata 9CONFIDENTIAL
Technical Features
• Fast and scalable data streaming– Load 20 experiments with 50k values in 15 seconds– Experiments loaded concurrently within Analyst– Only 5 MB of memory required per stream
• Access mirrors study-based tranSMART security• Secure system-to-system communication
• Compatible with Oracle and PostgreSQL
© 2014 Genedata 10CONFIDENTIAL
Summary Genedata Analyst™
• Unified translational system provides teams with an research collaboration and data analysis platform
– Rich statistical toolbox to explore and analyze data– Scalability for interactive analysis of extremely large data sets– Integration with public omics data source– State-of-the-art software architecture for end-to-end traceability– Reduce time to import, export, integrate, and analyze data
• Visit us at Booth #232 for a live demo & discussions
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www.genedata.com
Genedata AGSwitzerland
Margarethenstrasse 384053 BaselSwitzerland
Genedata GmbHGermany
Fürstenrieder Strasse 281 81377 MunichGermany
Genedata Inc USA
East Coast Office750 Marrett RoadOne Cranberry HillSuite 403Lexington, MA 02421
West Coast Office 109 Stevenson Street4th FloorSan Francisco, CA 94105
Genedata KKJapan
1-7-11-408 Higashi-Gotanda Shinagawa-KuTokyo 141-0022Japan