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Flying to the Top, One Tweet at a Time:  Using Social Media to Rank Online Search Results Robyn B. Reed, MA, MLIS Co-authors: Carrie L. Iwema, PhD, MLS Ansuman Chattopadhyay, PhD Health Sciences Library System University of Pittsburgh. Molecular Biology Information Service. - PowerPoint PPT Presentation
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Flying to the Top, One Tweet at a Time: Using Social Media to Rank Online Search Results Robyn B. Reed, MA, MLIS Co-authors: Carrie L. Iwema, PhD, MLS Ansuman Chattopadhyay, PhD Health Sciences Library System University of Pittsburgh
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Page 1: Molecular Biology Information Service

Flying to the Top, One Tweet at a Time:  Using Social Media to Rank Online Search Results 

Robyn B. Reed, MA, MLISCo-authors:

Carrie L. Iwema, PhD, MLS Ansuman Chattopadhyay, PhD

Health Sciences Library SystemUniversity of Pittsburgh

Page 2: Molecular Biology Information Service

Workshops

Website

Software Licensing

Consultations

Molecular Biology Information Service

Page 3: Molecular Biology Information Service

Online Bioinformatics Resources Collection (OBRC)

http://www.hsls.pitt.edu/obrc/

Page 4: Molecular Biology Information Service

Resources displayed by keyword ranking

http://www.hsls.pitt.edu/obrc/

Page 5: Molecular Biology Information Service

Challenges:Many tools exist and increasing in number

User may retrieve several resources

Common question –How do I know which one(s) to

use?

Page 6: Molecular Biology Information Service

Goal:Provide up-to-date ratings of most

highly regarded resources in bioinformatics

Objectives:

Using social media, design ranking system of OBRC resources

Determine if social media results reflect opinions of bioinformatics experts

Page 7: Molecular Biology Information Service

Why use the social media??

• No official rankings of bioinformatics tools

• Opinions of several people

• Social media data has many applications

Page 8: Molecular Biology Information Service

http://beta.socialguide.com/

Page 9: Molecular Biology Information Service

Methodology

Wrote 5 research questions

Common bioinformatics queries

Each question listed 3 possible resources to accomplish that task

Page 10: Molecular Biology Information Service

Resources wereranked using social media data

Experts (2) independently ranked resources

Methodology

Research questions

Page 11: Molecular Biology Information Service

Methodology – Social Media Ranking

Sources used for data collection

Google Blogs Google Discussions

Google Discussions includes• Forums• Groups• Comments

www.google.com

Page 12: Molecular Biology Information Service

Twitter considered and removed

• 50% of the resources had zero Tweets• 20% captured non-specific Tweets

Facebook not included

• Concern over private settings

Methodology – Data Sources

Page 13: Molecular Biology Information Service

Methodology – Social Media Ranking

Searched “all time”

Optimized for most accurate retrieval

• Resource in quotes• Increased specificity, decreased noise• Fewer hits

Page 14: Molecular Biology Information Service

[(“ucsc genome browser”) AND ( bioinformatics | genome | genetics | genomics | computer | algorithm | software | server | database | computer model | protein | proteomics | proteome | gene | DNA | RNA | sequence | alignment | interactions | structure | modeling | prediction | biochemistry | molecular biology | systems biology | computational biology)]

• Put all OBRC resources in bioinformatics context• Automate the searches

Example of search of UCSC genome browser

Methodology – Search Filter

Page 15: Molecular Biology Information Service

Results  Bioinformatics Tools

Blogs + Discussion Raw

NumbersSocial

Media RankExpert 1 Rank

Expert 2 Rank

  CPHmodels 49 2 2 23-D protein prediction ESypred3D 17 3 3 3

  SWISS-MODEL 228 1 1 1             IDT SciTools 4 2 2 2

PCR primer design Primer3 728 1 1 1  Primer Design Assistant 0 3 3 3             DIANA-microT 12 1 1 2

microRNA target design miRGator 9 2 2 3

  siRNA target finder Ambion 3 3 3 1             ClustalW 1494 1 1 3multiple sequence alignment

ECR Browser 8 3 3 1  Tcoffee 63 2 2 2             Ensembl 3070 1 3 2

genome browsers NCBI Map Viewer 56 3 2 3  UCSC Genome Browser 928 2 1 1

Page 16: Molecular Biology Information Service

  Bioinformatics Tools

Blogs + Discussion Raw

NumbersSocial

Media RankExpert 1 Rank

Expert 2 Rank

  CPHmodels 49 2 2 23-D protein prediction ESypred3D 17 3 3 3

  SWISS-MODEL 228 1 1 1             IDT SciTools 4 2 2 2

PCR primer design Primer3 728 1 1 1  Primer Design Assistant 0 3 3 3             DIANA-microT 12 1 1 2

microRNA target design miRGator 9 2 2 3

  siRNA target finder Ambion 3 3 3 1             ClustalW 1494 1 1 3multiple sequence alignment

ECR Browser 8 3 3 1  Tcoffee 63 2 2 2             Ensembl 3070 1 3 2

genome browsers NCBI Map Viewer 56 3 2 3  UCSC Genome Browser 928 2 1 1

Results

Page 17: Molecular Biology Information Service

  Bioinformatics Tools

Blogs + Discussion Raw

NumbersSocial

Media RankExpert 1 Rank

Expert 2 Rank

  CPHmodels 49 2 2 23-D protein prediction ESypred3D 17 3 3 3

  SWISS-MODEL 228 1 1 1             IDT SciTools 4 2 2 2

PCR primer design Primer3 728 1 1 1  Primer Design Assistant 0 3 3 3             DIANA-microT 12 1 1 2

microRNA target design miRGator 9 2 2 3

  siRNA target finder Ambion 3 3 3 1             ClustalW 1494 1 1 3multiple sequence alignment

ECR Browser 8 3 3 1  Tcoffee 63 2 2 2             Ensembl 3070 1 3 2

genome browsers NCBI Map Viewer 56 3 2 3  UCSC Genome Browser 928 2 1 1

Results

Page 18: Molecular Biology Information Service

Conclusions:

This system can be used to determine highly regarded tools

Explain that rankings are subjective;

try the top 3-5 resources

Provides patron with a starting point when using the OBRC

Page 19: Molecular Biology Information Service

Limitations

• Quotation marks can be limiting ifresource >1 word

• Very small part of the total social media

• “Negative” discussion about a resource

Page 20: Molecular Biology Information Service

Future Directions

• Test > 3 bioinformatics tools/category

• Increase number of expert ratings

• Test applicability of system in areas other than bioinformatics

Page 21: Molecular Biology Information Service

Special thanks to:

Project collaborators and experts:Ansuman Chattopadhyay, PhDCarrie Iwema, PhD, MLS

Research and academic advisors: Nancy Tannery, MLSRebecca Crowley, MD, MS

Funding from the Pittsburgh Biomedical Informatics Training Program

NLM Grant 3 T15 LM007059-23S1

Page 22: Molecular Biology Information Service

Thank you!

Any questions?

Robyn Reed [email protected]


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