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Magnetic Resonance Imaging:Magnetic Resonance Imaging:Physical PrinciplesPhysical Principles
,
Lewis Center forNeuroImaging
04/11/23 2
Physics of MRI, An OverviewPhysics of MRI, An Overview Nuclear Magnetic
Resonance– Nuclear spins– Spin precession and the
Larmor equation– Static B0– RF excitation– RF detection
Spatial Encoding– Slice selective excitation– Frequency encoding– Phase encoding– Image reconstruction
Fourier Transforms– Continuous Fourier
Transform– Discrete Fourier Transform– Fourier properties– k-space representation in
MRI
04/11/23 3
Physics of MRIPhysics of MRI Echo formation
– Vector summation– Phase dispersion– Phase refocus
2D Pulse Sequences– Spin echo– Gradient echo– Echo-Planar Imaging
Medical Applications– Contrast in MRI– Bloch equation
Tissue properties– T1 weighted imaging– T2 weighted imaging– Spin density imaging
Examples 3D Imaging Spectroscopy
04/11/23 4
Many spins in a voxel: vector summationMany spins in a voxel: vector summation
spins in step spins not in step
Rotating frame
Lamor precession
04/11/23 5
Phase dispersion due to perturbing B Phase dispersion due to perturbing B fieldsfields
Spin Phase Bt B = B0 + B0 + Bcs + Bpp
sometime after RF excitationImmediately after RF excitation
sampling
04/11/23 6
Refocus spin phase – echo formationRefocus spin phase – echo formation
time
• Invert perturbing field: B -B
• Invert spin state: -
Phase 0 Bt -B(t-TE/2) 0
Phase 0 Bt -+B(t-TE/2) 0
Echo Time (TE)
(gradient echo, k-space sampling)
(spin echo)
04/11/23 7
Spin EchoSpin Echo
Spins dephase with time
Rephase spins with a 180° pulse
Echo time, TE
Repeat time, TR
(Running analogy)
1 . E q u ilib riu m 2 . 9 0 P u lset= 0
3 . S p in D ep h a s in g
4 . 1 8 0 P u lset= T E /2
5 . S p in ech ot= T E
04/11/23 8
Frequency encoding - 1D imaging Frequency encoding - 1D imaging
m(x)
Spatial-varying resonance frequency during RF detection
S(t) = m(x)eikxxdx = S(kx), m(x) = FT{S(kx)}
S(t) ~ eit
S(t) ~ m(x)eiGxxtdx
kx = Gxtx
B = B0 + Gxx
04/11/23 9
Slice selectionSlice selectionSpatial-varying resonance frequency during RF excitation
z
B1 freq band
= 0 + Gzz
m+ = mx+imy ~ b1(t)e-iGzztdt = B1(Gzz)
Excited location
Slice profile
04/11/23 10
Gradient Echo FT imagingGradient Echo FT imaging
y Gradient
-35000
0
35000
Am
pli
tud
e (a
rb)
z Gradient
-35000
0
35000
Am
pli
tud
e (a
rb)
RF
-35000
0
35000
0 2000 4000 6000 8000 10000Time (us)
Am
pli
tud
e (a
rb)
x Gradient
-35000
0
35000
Am
plit
ud
e (
arb
)
kx
ky
Readout
Repeat with different phase-encodingamplitudes to fill k-space
dttGtk )(2
)(
04/11/23 11
Pulse sequence designPulse sequence design
y Gradient
-35000
0
35000
Am
pli
tud
e (a
rb)
z Gradient
-35000
0
35000
Am
pli
tud
e (a
rb)
RF
-35000
0
35000
0 2000 4000 6000 8000 10000Time (us)
Am
pli
tud
e (a
rb)
x Gradient
-35000
0
35000
Am
plit
ud
e (
arb
)
prewinderspoiler
rephasor
rewinderspoiler
04/11/23 12
EPI (echo planar imaging)EPI (echo planar imaging)X
Y
Z
time
kx
ky
Quick, but very susceptible to artifacts, particularly B0 field inhomogeneity.Can acquire a whole image with one RF pulse – single shot EPI
RF
04/11/23 13
Spin Echo FT imagingSpin Echo FT imagingx Gradient
-35000
0
35000
Am
pli
tud
e (a
rb)
y Gradient
-35000
0
35000
Am
pli
tud
e (a
rb)
z Gradient
-35000
0
35000
Am
pli
tud
e (a
rb)
RF
-35000
0
35000
0 5000 10000 15000 20000 25000Time (us)
Am
pli
tud
e (a
rb)
kx
ky
dttGtk )(2
)(
Readout
Repeat with different phase-encodingamplitudes to fill k-space
04/11/23 14
Spin RelaxationSpin RelaxationSpins do not continue to precess foreverLongitudinal magnetization returns to equilibrium
due to spin-lattice interactions – T1 decay
Transverse magnetization is reduced due to both spin-lattice energy loss and local, random, spin dephasing – T2 decay
Additional dephasing is introduced by magnetic field inhomogeneities within a voxel – T2' decay. This can be reversible, unlike T2 decay
04/11/23 15
Bloch EquationBloch EquationThe equation of MR physics
Summarizes the interaction of a nuclear spin with the external magnetic field B and its local environment (relaxation effects)
MT
zMMT
BMdt
Mdz
20
1
1ˆ
1
04/11/23 16
Contrast - T1 DecayContrast - T1 Decay Longitudinal relaxation
due to spin-lattice interaction
Mz grows back towards its equilibrium value, M0
For short TR, equilibrium moment is reduced
)1()( 1/0
Ttz eMtM
0 1 2 3 4 5-1.0
-0.5
0.0
0.5
1.0180
o Pulse
Inversion Recovery
t/T1
Mz/M
0
04/11/23 17
Contrast - T2 DecayContrast - T2 Decay Transverse relaxation due
to spin dephasing T2 irreversible dephasing T2/ reversible dephasing Combined effect
*2/
/22
*2
)0()(
111
TteMtM
TTT
0 1 2 3 4 5
0.0
0.2
0.4
0.6
0.8
1.0
t/T2*M
x(t)
/Mx(
0)
04/11/23 18
Free Induction Decay – Free Induction Decay – Gradient echo (GRE)Gradient echo (GRE)
Excite spins, then measure decay
Problems:– Rapid signal decay– Acquisition must be
disabled during RF– Don’t get central
“echo” data
time
e-t/T2*
90 RF0
MR signal
04/11/23 19
Spin echo (SE)Spin echo (SE)
time
e-t/T2*
90 RF0
MR signal
180 RF0
e-t/T2
04/11/23 20
MR Parameters: TE and TRMR Parameters: TE and TREcho time, TE is the time from the RF excitation
to the center of the echo being received. Shorter echo times allow less T2 signal decay
Repetition time, TR is the time between one acquisition and the next. Short TR values do not allow the spins to recover their longitudinal magnetization, so the net magnetization available is reduced, depending on the value of T1
Short TE and long TR give strong signals
04/11/23 21
Contrast, Imaging ParametersContrast, Imaging Parameters
)GRE(e)e1(or
)SE(e)e1()TE,TR(S*21
21
T/TET/TR
T/TET/TR
TE TR Image WeightingShort Long ProtonShort Short T1Long Long T2, T2*
04/11/23 22
Properties of Body TissuesProperties of Body TissuesTissue T1 (ms) T2 (ms)
Grey Matter (GM) 950 100
White Matter (WM) 600 80
Muscle 900 50
Cerebrospinal Fluid (CSF) 4500 2200
Fat 250 60
Blood 1200 100-200
MRI has high contrast for different tissue types!
04/11/23 23
MRI of the Brain - SagittalMRI of the Brain - Sagittal
T1 ContrastTE = 14 msTR = 400 ms
T2 ContrastTE = 100 msTR = 1500 ms
Proton DensityTE = 14 msTR = 1500 ms
04/11/23 24
MRI of the Brain - AxialMRI of the Brain - Axial
T1 ContrastTE = 14 msTR = 400 ms
T2 ContrastTE = 100 msTR = 1500 ms
Proton DensityTE = 14 msTR = 1500 ms
04/11/23 25
Brain - Sagittal Multislice T1Brain - Sagittal Multislice T1
04/11/23 26
Brain - Axial Multislice T1Brain - Axial Multislice T1
04/11/23 27
Brain TumorBrain Tumor
Post-Gd T1
T1 T2
04/11/23 28
3D Imaging3D ImagingInstead of exciting a thin slice, excite a thick slab
and phase encode along both ky and kz
Greater signal because more spins contribute to each acquisition
Easier to excite a uniform, thick slab than very thin slices
No gaps between slicesMotion during acquisition can be a problem
04/11/23 29
2D Sequence (Gradient Echo)2D Sequence (Gradient Echo)
Gx
Gy
Gz
b1
acqky
kx
TR
TEScan time = NyTR
04/11/23 30
3D Sequence (Gradient Echo)3D Sequence (Gradient Echo)
Gx
Gy
Gz
b1
acq
kx
ky
kz
Scan time = NyNzTR
04/11/23 31
3D Imaging - example3D Imaging - example
•Contrast-enhanced MRA of the carotid arteries. Acquisition time ~25s.•160x128x32 acquisition (kxkykz).•3D volume may be reformatted in post-processing. Volume-of-interest rendering allows a feature to be isolated.•More on contrast-enhanced MRA later
04/11/23 32
SpectroscopySpectroscopy Precession frequency depends on the chemical
environment (Bcs) e.g. Hydrogen in water and hydrogen in fat have a f = fwater – ffat = 220 Hz
Single voxel spectroscopy excites a small (~cm3) volume and measures signal as f(t). Different frequencies (chemicals) can be separated using Fourier transforms
Concentrations of chemicals other than water and fat tend to be very low, so signal strength is a problem
Creatine, lactate and NAA are useful indicators of tumor types
04/11/23 33
Spectroscopy - ExampleSpectroscopy - Example
Intensity
Frequency
04/11/23 34
Future lecturesFuture lectures Magnetization preparation
(phase and magnitude, pelc)
Fast imaging (fast sequences, epi, spiral…)
Motion (artifacts, compensation, correction, navigator…)
MR angiography (TOF, PC, CE)
Perfusion and diffusion Functional imaging
(fMRI) Cardiac imaging
(coronary MRA)
04/11/23 35
33rdrd dimension – phase encoding dimension – phase encoding
Before frequency encoding and after slice selection, apply y-gradient pulse that makes spin phase varying linearly in y.
Repeat RF excitation and detection with different gradient area.
S(ky, t) = m+(x,y,z)dz)eikyyeiGxxtdxdy