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CSIRO PUBLISHING Marine and Freshwater Research, 2008, 59, 322–331 www.publish.csiro.au/journals/mfr Multi-year validation of photographic identification of grey nurse sharks, Carcharias taurus, and applications for non-invasive conservation research Carley S. Bansemer A,B and Mike B. Bennett A A School of Biomedical Sciences, University of Queensland, St Lucia, Queensland 4072, Australia. B Corresponding author. Email: [email protected] Abstract. Captive and wild Carcharias taurus were used to assess whether spots present on their flanks were suitable as natural tags for individual shark recognition. Photographic images of seven captive sharks taken at monthly intervals for 14 months and at 3 years after the start of the study indicated that spot numbers, positions and sizes did not change. Eighty-nine wild sharks were photographically re-captured at least once subsequent to their initial image-capture; fourteen were re-photographed at least 23 months subsequent to their initial image-capture and a single individual after 14 years. Unique physical marks (e.g. partial fin loss) on six wild sharks were used to validate the pattern recognition process by providing unambiguous identification of individuals independently of their spots. Preliminary visual identification data on the eastern Australian C. taurus population show how spatial and temporal information on individual sharks can be collected without recourse to conventional tagging to address key questions about this species’ ecology and population biology. Additional keywords: natural marks, photo-identification, spot, tag. Introduction Conventional tagging methodologies are commonly used to col- lect data for use in models to estimate population size, as well as life history information (e.g. growth rates and gross movement patterns) (Cliff et al. 1996; Strong et al. 1996). Although the rel- atively recent use of electronic tags has allowed the collection of different data (e.g. real-time locations and diving profiles), their role in determining population sizes and structures is limited as few tags are deployed (Kohler and Turner 2001; Bruce et al. 2006; Wilson et al. 2006). Photographic identification (PID) studies of elasmobranch species have been used successfully to gain information on population size, structure and survival trends of the whale shark (Rhincodon typus) (Arzoumanian et al. 2005; Meekan et al. 2006; Graham and Roberts 2007), population estimates of the nurse shark (Ginglymostoma cirratum) (Cas- tro and Rosa 2005) and site-fidelity and population-structure of an aggregation of great white sharks (Carcharodon carcharias) (Domeier and Nasby-Lucas 2006). The grey nurse shark (Carcharias taurus) appears on the World Conservation Union’s Red List of Threatened Species as Vulnerable, with the population along the eastern seaboard of Australia listed as Critically Endangered (A2abcd) based on population declines (Cavanagh et al. 2003; IUCN 2007). Nation- ally, the east coast population is listed as critically endangered under the Environmental Protection and Biodiversity Conser- vation Act 1999 (EPBC 1999), which along with the EPBC Regulations 2000 identified the need for a recovery plan for this species in Australia. The Australian Recovery Plan for C. taurus was released in 2002 (Environment Australia 2002), resulting in the introduction of protection measures for C. taurus at key aggregation sites in Queensland and New South Wales (Bennett and Bansemer 2004), although their effectiveness in facilitating recovery of the population is unknown. A mark–recapture study of C. taurus using dorsal fin-attached Rototags on the east coast of Australia conducted in 2003 resulted in an estimate of between 410 and 461 individuals (Otway and Burke 2004), but subsequent tag-biofouling compro- mised their use for individual shark identification. A review of tagging research on this species concluded that permanent physi- cal tagging cease (Department of the Environment and Heritage 2003). Consequently, we considered the possibility of using nat- ural marks as a means to identify individual grey nurse sharks, as PID studies do not involve physical contact with the species studied. Photographic identification methodologies are therefore generally considered to be non-invasive, although the possibility remains that the presence of photographers in proximity to the study-species may affect its behaviour. The overall aim of the current study was to determine whether spots on the flanks of C. taurus could provide a reliable, non- invasive method to unambiguously identify individual sharks under natural conditions. To achieve this we aimed to (1) assess the temporal stability of spots in a captive population of C. taurus housed in a public display aquarium over a 3-year period, and (2) use photographic images spanning 16 years to examine the long-term stability of spots in natural populations. Validation of a PID approach would allow for intensive, non-invasive monitoring of the shark population and could, importantly, replace invasive approaches to gain information on © CSIRO 2008 10.1071/MF07184 1323-1650/08/040322
Transcript
Page 1: Multi-year validation of photographic identification of grey nurse sharks,               Carcharias taurus               , and applications for non-invasive conservation research

CSIRO PUBLISHING

Marine and Freshwater Research, 2008, 59, 322–331 www.publish.csiro.au/journals/mfr

Multi-year validation of photographic identification ofgrey nurse sharks, Carcharias taurus, and applicationsfor non-invasive conservation research

Carley S. BansemerA,B and Mike B. BennettA

ASchool of Biomedical Sciences, University of Queensland, St Lucia, Queensland 4072, Australia.BCorresponding author. Email: [email protected]

Abstract. Captive and wild Carcharias taurus were used to assess whether spots present on their flanks were suitableas natural tags for individual shark recognition. Photographic images of seven captive sharks taken at monthly intervalsfor 14 months and at 3 years after the start of the study indicated that spot numbers, positions and sizes did not change.Eighty-nine wild sharks were photographically re-captured at least once subsequent to their initial image-capture; fourteenwere re-photographed at least 23 months subsequent to their initial image-capture and a single individual after 14 years.Unique physical marks (e.g. partial fin loss) on six wild sharks were used to validate the pattern recognition process byproviding unambiguous identification of individuals independently of their spots. Preliminary visual identification dataon the eastern Australian C. taurus population show how spatial and temporal information on individual sharks can becollected without recourse to conventional tagging to address key questions about this species’ ecology and populationbiology.

Additional keywords: natural marks, photo-identification, spot, tag.

Introduction

Conventional tagging methodologies are commonly used to col-lect data for use in models to estimate population size, as well aslife history information (e.g. growth rates and gross movementpatterns) (Cliff et al. 1996; Strong et al. 1996). Although the rel-atively recent use of electronic tags has allowed the collection ofdifferent data (e.g. real-time locations and diving profiles), theirrole in determining population sizes and structures is limited asfew tags are deployed (Kohler and Turner 2001; Bruce et al.2006; Wilson et al. 2006). Photographic identification (PID)studies of elasmobranch species have been used successfully togain information on population size, structure and survival trendsof the whale shark (Rhincodon typus) (Arzoumanian et al. 2005;Meekan et al. 2006; Graham and Roberts 2007), populationestimates of the nurse shark (Ginglymostoma cirratum) (Cas-tro and Rosa 2005) and site-fidelity and population-structure ofan aggregation of great white sharks (Carcharodon carcharias)(Domeier and Nasby-Lucas 2006).

The grey nurse shark (Carcharias taurus) appears on theWorld Conservation Union’s Red List of Threatened Speciesas Vulnerable, with the population along the eastern seaboardof Australia listed as Critically Endangered (A2abcd) based onpopulation declines (Cavanagh et al. 2003; IUCN 2007). Nation-ally, the east coast population is listed as critically endangeredunder the Environmental Protection and Biodiversity Conser-vation Act 1999 (EPBC 1999), which along with the EPBCRegulations 2000 identified the need for a recovery plan for thisspecies in Australia. The Australian Recovery Plan for C. tauruswas released in 2002 (Environment Australia 2002), resulting

in the introduction of protection measures for C. taurus at keyaggregation sites in Queensland and New South Wales (Bennettand Bansemer 2004), although their effectiveness in facilitatingrecovery of the population is unknown.

A mark–recapture study of C. taurus using dorsal fin-attachedRototags on the east coast of Australia conducted in 2003resulted in an estimate of between 410 and 461 individuals(Otway and Burke 2004), but subsequent tag-biofouling compro-mised their use for individual shark identification. A review oftagging research on this species concluded that permanent physi-cal tagging cease (Department of the Environment and Heritage2003). Consequently, we considered the possibility of using nat-ural marks as a means to identify individual grey nurse sharks,as PID studies do not involve physical contact with the speciesstudied. Photographic identification methodologies are thereforegenerally considered to be non-invasive, although the possibilityremains that the presence of photographers in proximity to thestudy-species may affect its behaviour.

The overall aim of the current study was to determine whetherspots on the flanks of C. taurus could provide a reliable, non-invasive method to unambiguously identify individual sharksunder natural conditions. To achieve this we aimed to (1) assessthe temporal stability of spots in a captive population of C. taurushoused in a public display aquarium over a 3-year period, and(2) use photographic images spanning 16 years to examine thelong-term stability of spots in natural populations.

Validation of a PID approach would allow for intensive,non-invasive monitoring of the shark population and could,importantly, replace invasive approaches to gain information on

© CSIRO 2008 10.1071/MF07184 1323-1650/08/040322

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Photographic identification of Carcharias taurus Marine and Freshwater Research 323

population size and structure, growth rates, mortality, habitatoccupancy, sex ratios, sexual segregation and the timing, scaleand patterns of individual shark movements.

Materials and methodsFeatures used for shark identificationCarcharias taurus has bronze-grey skin, is paler ventrally, withsome individuals displaying dark margins to their fins. Darkspots are found on all body surfaces, including the fins, but aremost abundant posterior to the first dorsal fin and anterior to thecaudal peduncle. Spots vary in size, shape, density, number andposition on left and right flanks of individuals and between indi-viduals. Two spot-types were observed on sharks; small, verydark spots (Fig. 1a) and, more commonly, larger spots com-prising pigmentation that was slightly darker than that of thegeneral body surface (Fig. 1b). Both spot-types were visiblein photographic images and proved suitable for mapping theirdistributions on the flanks of C. taurus.

Several sharks exhibited additional features that assisted intheir identification. Puncture wounds and lacerations to the bodyand fins of female sharks (Fig. 1c) were observed during themating season, whereas other injuries appeared to be perma-nent, such as the loss of significant portions of fins (Fig. 1d) andjaw damage (Fig. 1e). Other features for unambiguous identi-fication of individuals included the appearance of tag-insertionsites and fouled tags (Fig. 1f ), embedded fishing hooks (Fig. 1g)and attached fishing-line (Fig. 1h).

Carcharias taurus: in captivityStudy siteThe captive study population of seven C. taurus was main-

tained in a 2.2-megalitre (ML) public display aquarium atUnderwater World (UWW) Mooloolaba, Queensland, Australia.Fresh seawater was supplied at ambient ocean temperature at arate of 0.9 ML day−1, resulting in a seasonal variation in watertemperatures between 18◦ and 29◦C. The aquarium was fullyenclosed, with artificial lighting from 0800 to 1900 hours eachday.

The study population comprised two female and three malesharks captured from southern Queensland waters and twofemale sharks captive-born at UWW. All sharks were mature,between 2 and 3 m total length (LT ), similar to those routinelyencountered by divers at C. taurus aggregation sites, and exhib-ited some behaviours (e.g. seasonal mating activity) similar tothose displayed by individuals in the natural environment.

Image capturePhotographic images of sharks at UWW were obtained

using digital cameras in underwater housings (Video = DSR-HC1000 & MPK-PHP, Sony, Tokyo, Japan; Still = DSC-100,Sony,Tokyo, Japan & SLR-DC, Ikelite, USA; EOS 400D, Canon,Tokyo, Japan & Invader, Amphibico, Canada). Digital imagesof the left and right flanks of the seven captive grey nursesharks were taken from inside the aquarium by the primaryauthor and UWW staff over a period of 3 years (February2004–February 2007), and included a focussed study in whichimages were taken monthly for 14 consecutive months (February2004–March 2005).

Analysis of imagesAll spots identified in images taken at the start of the study

were compared with all spots identified in subsequent imagesand assessed by eye for changes in spot number, spot appear-ance, spot location and other body surface features (e.g. scars,fin damage or mating injuries). Additionally, all individual spotson one flank of each captive shark were allocated an identi-fication number in images taken at the start of the study. Thepresence/absence, appearance and relative position of each num-bered spot was determined in all subsequent images. We ensuredthat the same spot was being compared by using relative inter-spot distances and distances from spots to fixed features (e.g.origin of the first dorsal fin, insertion of the pelvic fins, etc.).Images of C. taurus were not used if spots could not be clearlydiscerned owing to poor image quality (e.g. significant presenceof backscatter, poor contrast, lack of resolution or because theimage was out of focus).

Carcharias taurus: in the natural environmentStudy sitesTwo sites in southern Queensland waters (Flat Rock; 153◦

33.129′ E, 27◦ 23.445′ S and Wolf Rock; 153◦ 11.800′ E, 25◦54.630′ S) were used to explore the applicability of PID-basedtagging and recognition of sharks in the natural environment.Flat Rock is characterised by two rock formations that breakthe surface and a sandy bottom at a depth of 25 m from whichsteep granite walls rise to form distinctive gutters (Ford et al.2003). Images of C. taurus were taken at Flat Rock in the‘shark gutter’between 1991 and 2006. Wolf Rock comprises foursteep-walled pinnacles, two of which are exposed under all tidalconditions. Individual sharks were photographed at depths of10–35 m between 2003 and 2007. The study population com-prised mature male and female C. taurus between 2 and 3 m LT .

Image capturePhotographic images of wild C. taurus used in the present

study were taken by the primary author (2001–2007) and byrecreational divers (1991–2007). Free training workshops con-ducted over 6 years (2002–2007) were used to encourage thegeneral diving community to participate in the supply of dataon shark numbers at aggregation sites. In addition, contribu-tions of images of sharks were specifically solicited from divers(2004–2007). To aid this process, regular presentations wereheld at dive shops and dive clubs to provide information onhow to dive responsibly with grey nurse sharks and aspects ofthe species’ biology, while simultaneously recruiting volunteerunderwater photographers for the study. These divers submittedhigh-resolution digital images together with dive locations anddates to the primary author. In 2004 and 2005 a monthly prizewas awarded to the photographer of a randomly selected C. tau-rus image to encourage the diving community to provide imagesfor this project.

Analysis of imagesImages of sharks in the natural environment were catalogued

by flank (left or right), sex, date of image-capture and geograph-ical locality. A subset of images from 12 fieldtrips involvingnine photographers was analysed to determine the approximate

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324 Marine and Freshwater Research C. S. Bansemer and M. B. Bennett

(a) (b)

(c) (d )

(e) (f )

(g) (h)

I

FA

Fig. 1. Features of use in shark identification. (a) Small, black pigment spots (infrequent); (b) variable-sized dark grey spots(common); (c) mating scars (seasonally common); (d) fin damage; (e) jaw deformity/damage; (f ) tag insertion site (labelled I) fouledtag (labelled F), and abrasion caused from fouled tag (labelled A); (g) embedded fishing hook and trailing line; (h) fishing line andrelated scarring.

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(a) (b)

(c) (d )

Fig. 2. Paired images of individual captive sharks showing the persistence of spot-patterns. (a) February 2004 and (b) February 2007 = femaleCarcharias taurus, showing a subset of nine matched spots and tissue loss to the trailing edge of the first dorsal fin (labelled ‘∗ ↑’) (c) March 2004 and(d) February 2007 = male C. taurus, showing a subset of nine matched spots.

proportion of images suitable for identification purposes. Thecriteria used previously to determine whether images of captivesharks were suitable for analysis were applied to this subset ofimages. Photographic ‘recaptures’ of individuals were based onmatching the distributions and appearances of spots by compar-ing all spots identified in the initial image with those identified inthe recapture images. Additionally, for sharks where the recap-ture period exceeded 23 months all individual spots visible inthe initial image were numbered and compared with the corre-sponding spots in the last image of that individual, as describedfor captive sharks. Independent verification of these shark’sidentities was provided by the presence of permanent scars,deformities and other unique body or fin features.

ResultsVerification of spot persistence: Carcharias taurusin captivityImages of both flanks of the seven captive sharks showed thatspots were consistent with respect to their relative sizes and posi-tions throughout the 3-year study period (Fig. 2a–d). Although

individual spots appeared to vary in density, multiple imagesof the same shark taken on a single day showed that this wasstrongly influenced by ambient light conditions (Fig. 2a, cf. b),the angle of the shark relative to the focal axis of the camera andthe amount of particulate matter in the water causing backscat-ter (Fig. 2c, cf. d). The clearest images were obtained underuniform, diffuse light in clear water conditions with the shark’sflank perpendicular to the camera’s focal axis.

Under suboptimal lighting conditions, such as the dap-pled light in Fig. 2a, spot visibility was diminished. Similarlybackscatter as seen in Fig. 2c, may result in false spots being iden-tified. Small or pale spots falling in areas of deep shadow or highreflectance were either difficult to resolve or were not visible.Some variation occurred in the visibility of specifically identi-fied (numbered) spots that were monitored on a monthly basisfor 14 months (Table 1). This apparent variation was a result of acombination of suboptimal lighting conditions or when an imagewas taken that inadvertently failed to include part of the spottedflank rather than a real change in spot presence. In four of thecaptive sharks all of the spots that were identified and numberedin the initial image were identified in all subsequent images. The

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326 Marine and Freshwater Research C. S. Bansemer and M. B. Bennett

Table 1. Individual spots matched through time for captive Carcharias taurusM, percentage of spots matched across all surveys; T, percentage of spots from the first image captured matched in the final image captured. The initial imagesof sharks 5 and 6 taken in month 0 did not include the whole area of interest, although the eight and seven spots seen on each shark, respectively, were all

visible in month 1 and 36. †, Shark had died

Shark Sex Cumulative month from start of study

0 1 2 3 4 5 6 7 8 9 10 11 12 13 24 36 M T

C1 � 19 17 19 19 19 19 19 19 19 19 19 19 19 19 † † 99.2 100C2 � 21 21 21 21 21 21 21 21 21 21 21 † † † † † 100 100C3 � 20 20 20 20 20 20 20 20 20 20 20 20 20 20 20 20 100 100C4 � 26 26 26 26 26 26 26 26 26 26 26 26 26 26 26 26 100 100C5 � (8) 20 20 20 20 20 20 20 11 20 20 20 20 20 19 20 93 100C6 � (7) 13 13 8 10 12 13 13 8 13 13 7 13 13 12 13 87 100C7 � 6 6 6 – 6 6 6 6 6 6 6 6 6 – 6 6 100 100

Table 2. Total number of image resights for individual wild Carcharias taurusMR, maximum number of times individual sharks were resighted; TS, total number of individual sharks resighted

at least once subsequent to initial image capture

Sex/Flank TS MR

1 2 3 4 5 6 9

�/Left 57 34 10 10 2 – 1 –�/Right 48 23 11 7 6 1 – –�/Left 25 18 3 2 – – 2 –�/Right 32 17 9 3 – 2 – 1

other three sharks exhibited some apparent inter-month variabil-ity in spot presence, although all of the spots identified in theinitial images were also visible in the final images. Although oneshark (C6, Table 1) exhibited considerable variability in regardto the numbered spots that could be seen, this was the result ofpoor lighting conditions or part of the shark’s flank not appearingin the image.

Even though the aquarium lighting conditions provided lessthan favourable photographic conditions the minimum propor-tion of spots that were re-identified on any occasion for anycaptive shark was 87% (Table 1); a rate that still permitted suc-cessful identification of individuals. The appearance of previousinjuries (tissue loss, heavy scarring and jaw injury) and spinaldeformities also remained unchanged in appearance over thesurvey period. For example, damage to the trailing edge of oneshark’s first dorsal fin remained as an identifying feature overthe 3 years (Fig. 2a, b).

Verification of spot persistence: Carcharias taurusin the natural environmentOut of a subset of 800 images of grey nurse sharks, taken atWolf Rock and Flat Rock on 12 different occasions and by ninedifferent photographers, 615 (77%) were of sufficient qualityfor an individual to be recognised. Four hundred unique flankswere identified based on their spots, with 40% (162 out of 400)photographically recaptured at least once subsequent to their ini-tial documentation.The minimum possible number of individualsharks in the recapture analysis was 89, assuming that the 48 rightflanks of female sharks belonged to the same sharks for which

there were 57 left flank views and vice versa for male sharks(Table 2). Six female sharks were unambiguously matched forboth flanks. Consequently, the maximum possible number ofindividual sharks in the analysis was 156. About half (44%) ofthe sharks were resighted within a month of their initial sight-ing and image capture, with the remaining sharks resighted upto nine times over a period of 5115 days (Tables 2, 3). Therewas no indication of spots changing over the inter-observationperiods in regard to the 162 flanks that were recorded on at leasttwo occasions. Fourteen sharks were photographically recap-tured between 23 months and 3 years subsequent to their initialimages being captured, with one shark matched after 14 years.Individual spots were numbered on the initial images of thesefourteen sharks and no change in the presence, relative positionor size of spots was observed when compared with the same spotsin the final images (Table 4). Additionally, six of these fourteensharks had another permanent feature (e.g. fin notches, scars,embedded hooks) that allowed for verification of a shark’s iden-tity independent of its spots. These six sharks were successfullymatched using both their spots and the other identifying fea-ture(s), for example, images of a shark with a particular mouthdeformity obtained 23 months apart clearly showed the same 38prominent spots in both images (Fig. 3a, b). Similarly, 22 dis-tinct spots did not change demonstrably over 14 years on a lessheavily spotted shark that could be identified by a prominentscar along its right flank (Fig. 3c, d).

Several female sharks had mating related injuries comprisingtooth punctures and superficial lacerations. While healing, toothpunctures caused from mating could be mistaken as ‘additional

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Table 3. Total number of resights for different times at liberty for wild Carcharias taurusTL, time at liberty (in years) subsequent to initial identification date; TR, total number of resight events; TS, total

number of individual sharks resighted at least once subsequent to initial image capture

Sex/Flank TS TL TR

<1 1–2 2–3 3–4 14+�/Left 57 78 9 8 3 0 98�/Right 48 71 16 3 5 0 95�/Left 25 34 8 0 0 0 42�/Right 32 39 15 3 5 1 63

Table 4. Individual spots matched through time for wild Carcharias taurusUF, unique identifying feature (e.g. partial fin loss: P, present; A, absent); D, days between first and last image capture; S-1, spotsnumbered and identified from the first image captured of each shark; S-2, spots matched on the last image captured for each

shark; %, percentage of spots matched between first and last image capture dates

Shark Sex UF D S-1 S-2 %

1 � A 748 30 30 1002 � P 742 12 12 1003 � A 710 16 16 1004 � A 1075 22 22 1005 � P 1053 31 31 1006 � A 918 26 26 1007 � A 1438 22 22 1008 � A 1374 13 13 1009 � P 707 38 38 10010 � P 735 30 30 10011 � A 734 25 25 10012 � P 1087 3 3 10013 � P 5116 22 22 10014 � A 952 13 13 100

spots’ (similar to those identified in Fig. 1a). However, they aretemporary marks that on close inspection are different in colourand can be distinguished from permanent spots. In eighteensharks first sighted with mating wounds, resightings indicatedthat these wounds healed within about 3 months of the initialinjury. Other injuries, such as those that resulted in tissue lossto the caudal or pectoral fins (Fig. 4) showed evidence of tissueregrowth, although damage was still apparent after 22 months(Fig. 4c cf. d).

The appearance of fin notches (defined as healed, minor‘v- or c-shaped’ tissue loss to the leading or trailing edge offins) was highly variable. Of 10 sharks that had fin notches ontheir first sighting, three were seen to have healed completelybefore their subsequent resighting (two within 1 month and onewithin 23 months), whereas in two individuals the fin notcheswere still clearly visible after 2 and 3 years respectively. Finnotches observed on the remaining sharks were unchanged insubsequent observations, which ranged between 2 weeks and1 year. Large, obvious, fully healed scars resulting from consid-erable tissue damage or loss (e.g. Fig. 1d, e) exhibited minimalchange through the course of the present study.

Observations of fishing tackle attached to seven sharks indi-cated that its persistence varied considerably. A hook remained

embedded in a caudal fin (Fig. 1g) for 1 month only, whereas ahook with trailing line remained embedded in the jaw of anothershark for at least 1 year, although it was no longer evident after2 years. Fishing line seen protruding from a gill slit in one sharkpersisted for at least 35 months.

Discussion

Photographic identification is a successful non-invasive tag-ging method for studying the behaviour, ecology and populationbiology of elasmobranch species (Arzoumanian et al. 2005;Meekan et al. 2006; van Tienhoven et al. 2007). A review of greynurse shark tagging research conducted on the Critically Endan-gered east coast population of Carcharias taurus concluded thatfuture research involving tagging should be limited to short-termdeployment, such as pop-off archival tags, and that permanenttagging cease (Department for the Environment and Heritage2003). However, as one action of the Recovery Plan is to monitorthe population’s status, application of non-invasive PID could beused to fulfil this requirement. The eastern Australian grey nurseshark population is particularly well suited for such an approachas the sharks are easily accessible and readily observed by diversat aggregation sites. Additionally, as a shark-dive ecotourism

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328 Marine and Freshwater Research C. S. Bansemer and M. B. Bennett

(a) (b)

(c) (d )

Fig. 3. Paired images of individual wild sharks showing persistence of spots over 23 months. (a) August 2004, and (b) July 2006 = male Carchariastaurus, showing a subset of five matched spots, and over 14 years, (c) July 1991 and (d) July 2005 = male C. taurus, showing a subset of five matchedspots.

industry has operated for many years, there is an extensive pho-tographic archive that allows us to conduct retrospective analyseson this population.

Our study is the first to use both captive and wild C. taurusto examine the persistence of spots over many years. The use ofcaptive animals allows the identity of the sharks studied to beknown with a certainty that is difficult to achieve using animalsin the wild. The captive population also allows images to be col-lected at specific times and under controlled conditions, ratherthan relying on opportunistic observations in the natural habi-tat. Our study of captive and wild C. taurus confirms that spotsremain fundamentally unchanged for at least 3 years. Addition-ally, a single wild shark that was unambiguously matched from aunique scar across its flank and whose spots showed no change inrelative position, size or appearance for at least 14 years supportsthe likelihood of long-term spot-persistence.

Healed wounds on the fins and tail are used as unique identi-fiers in PID studies of basking sharks (Cetorhinus maximus),nurse sharks (Ginglymostoma cirratum), great white sharks

(Carcharodon carcharias), dolphins and whales (Hammond1990; Strong et al. 1996; Castro and Rosa 2005). However,Auger-Méthé and Whitehead (2007) report that a small dorsalnotch on a long-finned pilot whale (Globicephala melas) visi-ble in 1998 was no longer apparent in 2000. Other concernsabout the loss of distinguishing marks are noted in respect to findamage in C. carcharias, where subsequent injuries can removefeatures previously used for individual identification (Domeierand Nasby-Lucas 2006). In our study C. taurus can be seenwith fresh, superficial wounds resulting from mating activitiesat certain times of the year. Most of these wounds appear toheal completely within about 3 months and even in sharks withmore severe tissue loss there appears to be tissue regrowth thatchanges the appearance of the wound over time. These obser-vations reinforce the importance of using spots or other naturalpatterns in conjunction with other potential identifying featuresfor recognition of individuals.

Considerable variation can occur in the utility of imagesfor identification purposes due primarily to issues of image

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(a) (b)

(c) (d )

Fig. 4. Images of individual wild sharks showing tissue regrowth on the caudal fin over 2 months (a) December 2006 and (b) February 2007 = femaleCarcharias taurus, and on the pectoral fin over 22 months, (c) March 2005 and (d) January 2007 = female C. taurus.

resolution and contrast, artefacts and subject orientation. Mostmodern (film or digital) cameras can easily provide images ofsufficient resolution for image analysis, although a shark thatonly takes up a small proportion of the image area may stillprove unusable. Similarly, individual frames taken from a videosequence may lack sufficient resolution for accurate analysis.The spots on C. taurus can sometimes appear muted; underthese circumstances digital image enhancement software is use-ful in increasing image contrast to make spots more obvious.Further possible confounding factors relate to lighting condi-tions and mating wounds. Suspended particulate matter in thewater may produce artefacts that could be mistaken for naturalspots or which may obscure spots. Similarly, healing puncturewounds (that often result from mating) can resemble small darkspots that could be mistaken for permanent spots or which mayobscure permanent spots. Dappled light may obscure spots (see

Fig. 2) and is most likely to occur in shallow, sunlit waters (e.g.some spots were obscured in images of captive sharks where sub-stantial artificial lighting was present). This is not a significantproblem in regard to wild C. taurus as there is a more even lightenvironment at depths of 10–30 m, where sharks are generallyphotographed. Finally, the orientation of a shark with respect tothe focal axis of the camera is of importance, particularly if auto-mated spot-recognition programs (Arzoumanian et al. 2005; vanTienhoven et al. 2007) are to be used. The position of spots willappear to change relative to one another and to fixed featuresas the obliquity of view increases and will be compounded byflexion of the body if the shark is swimming. Our decision not touse automated spot-recognition software was related, in part, tothese factors and to the fact that there are no data to suggest thatautomated methods, although possibly faster, are more accuratethan manual pattern matching.

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330 Marine and Freshwater Research C. S. Bansemer and M. B. Bennett

A potentially serious limitation of the PID process for C. tau-rus and other sharks lies with the ability to match images ofthe left and right flanks of an individual. When bilateral imagesare available the individual can theoretically be identified, irre-spective of camera position. However, uncertainties arise if ashark is known only from a single view, for example of the leftflank, as any image of a shark’s right flank may or may not be ofthat individual. This uncertainty can compromise estimates ofpopulation size where it is necessary to ensure that the numberof individuals counted at a particular time and place is accu-rate. This uncertainty relating to the identity of individual sharksreduces the value of a PID approach for population estimates,unless (a) the appearance of both flanks of each individual isknown or (b) images of a single (e.g. left) flank of the body areonly collected for analysis. When possible, an image pair, com-prising left and right flanks of an individual was recorded, butthis was only possible when a specific shark was photographedfrom each side without having left the observer’s field of view orwhen the shark could be identified unambiguously by a featurevisible from both viewpoints, such as jaw-embedded hooks withtrailing fishing line. Importantly, unmatched left and right flankimages can still provide valuable data on aspects of the shark’sbiology, such as duration of occupancy, minimum abundanceand sex ratios at specific sites and movements between sites.

Globally many elasmobranch species are suitable for theapplication of PID. Whale sharks (Rhincodon typus), great whitesharks (C. carcharias), manta rays (Manta birostris), zebrasharks (Stegostoma fasciatum), tiger sharks (Galeocerdo cuvier)and the grey nurse shark (C. taurus) are important species forecotourism and have obvious spots/pigmentation patterns, mak-ing them suitable for the collection of photographic images. Inaddition, many less iconic elasmobranch species have pigmenta-tion patterns and habits that would likely make them well suitedto PID studies. Prime candidates for a PID approach are shal-low water species that are easily photographed or captured; forinstance, the Hemiscylliidae (longtailed carpet sharks), Orec-tolobidae (wobbegong sharks) and Heterodontidae (bullhead andhorn sharks) contain many highly patterned species that inhabita variety of shallow water habitats (Last and Stevens 1994; Cam-pagno 2001). As these demersal species are relatively sedentary(e.g. Huveneers et al. 2006; Heupel and Bennett 2007) they lendthemselves to future PID studies of their biology, although pig-mentation pattern stability over time would need to be verifiedfor each species.

Two important aspects of using PID methodology in study-ing the east Australian population of C. taurus are that it fostersstrong community involvement in the collection of data andthat the results can be used to examine questions relating tojuvenile, sub-adult, male and female (pregnant or not) sharksacross the species’ range. This ability to collect such data usinga non-invasive approach is of particular importance as conven-tional tagging methodologies have been shown to be unsuitablefor this species owing to tag fouling and subsequent injuries(Department for the Environment and Heritage 2003; Dickenet al. 2006).

We have verified the use of naturally occurring spots to iden-tify and monitor individual C. taurus over multiple years alongthe east coast of Australia. The ongoing development of a com-prehensive Australian east coast database and planned repeat

surveys of aggregation sites along the east coast of Australiawill provide for robust population estimates. Our investigationsallow for the monitoring of the C. taurus population statusthrough time, which is a key conservation requirement under theAustralian Recovery Plan for the east coast C. taurus population.

AcknowledgementsWe thank Professor A. Boulton and two reviewers for their constructive andhelpful comments. We thank A. Kilpatrick, all the UWW crew, D. Harasti,N. Marsh, K. Holzheimer, A. Nel, K. and C. Phillips, A. Walsh, J. Fos-ter and the numerous other volunteers for their support, field assistanceand images of C. taurus. We thank B. Bruce for his support and feed-back on earlier drafts. Underwater World (Mooloolaba), Seaworld (GoldCoast) and the Queensland Parks and Wildlife Service supplied prizes toproviders of shark images. Financial support was provided by the Depart-ment for the Environment and Heritage, the Queensland Government PhDSmart State Initiative and the Hermon Slade Foundation. In-kind supportwas provided by Queensland Parks and Wildlife Service – Moreton BayDistrict, Underwater World (Mooloolaba), Sea World (Gold Coast) andthe Queensland Museum. This research was conducted in accordance withUniversity of Queensland Animal Ethics Approval SBMS/196/04/DEH,SBMS/228/05/DEH, SBMS/560/06/DEH and SBS/640/07/HSF.

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Manuscript received 12 October 2007, accepted 28 February 2008


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