5780 Chem. Soc. Rev., 2012, 41, 5780–5799 This journal is c The Royal Society of Chemistry 2012
Cite this: Chem. Soc. Rev., 2012, 41, 5780–5799
Nanomaterials in complex biological systems: insights from
Raman spectroscopy
Daniela Drescherab
and Janina Kneipp*ab
Received 5th April 2012
DOI: 10.1039/c2cs35127g
The interaction of nanomaterials with biomolecules, cells, and organisms plays an important role
in cell biology, toxicology, and nanotechnology. Spontaneous Raman scattering can be used to
probe biomolecules, cells, whole animals, and nanomaterials alike, opening interesting avenues to
study the interaction of nanoparticles with complex biological systems. In this review we discuss
work in biomedical Raman spectroscopy that has either been concerned directly with
nanostructures and biosystems, or that indicates important directions for successful future studies
on processes associated with nano-bio-interactions.
1 Introduction
The interaction of nanomaterials with biological objects,
i.e., with biomolecules, cells, tissues is of interest in several
different contexts: the awareness of the omnipresence of
nanoparticles in our everyday life has increased tremendously
over the last decade, and has been pushing research in the field
of nanotoxicity. At the same time, significant progress has
been made in nanomaterials research, nanobiotechnology,
and nanophotonics, including work on nanoobjects which
are relevant for the interaction of biological samples with
man-made nanomaterials ‘‘in the field’’. The schematic in
Fig. 1 illustrates some of the questions that are asked when
a nanomaterial encounters a biological cell. The material may
enter the cell, depending on its properties. Will it enter the cell?
In case it does, what is the mechanism of uptake? Where in
the cell will it reside? Will its presence lead to changes in the
cellular biochemistry? If so, what are these changes? Can the
material be considered cytotoxic?
Raman probing and imaging of tissues and cells has become an
established area of research in connection with biodiagnostics and
with the biochemical characterization of complex biomaterials. As
numerous examples have shown, Raman microspectra can be
used for hyperspectral imaging, classification, and identification of
biological samples.1–4 At the same time, they can provide informa-
tion about the structure, and also dynamics of biomolecules.5–8
aHumboldt-Universitat zu Berlin, Department of Chemistry,Brook-Taylor-Str. 2, 12489 Berlin, Germany.E-mail: [email protected];Fax: +49-30-2093 6985; Tel: +49-30-2093 7171
b BAM Federal Institute for Materials Research and Testing,12489 Berlin, Germany
Daniela Drescher
Daniela Drescher studiedchemistry at the Humboldt-Universitat zu Berlin, whereshe received her Diplomadegree in 2008. She iscurrently working on herdoctoral thesis in the group ofJanina Kneipp, focusing on theapplication of spectroscopicand microscopic methods toinvestigate the impact ofnanomaterials on eukaryoticcells.
Janina Kneipp
Janina Kneipp received herdoctoral degree from FreieUniversitat Berlin in 2002.After postdoctoral researchat Erasmus UniversiteitRotterdam and PrincetonUniversity’s Chemistry Depart-ment, she has been workingat BAM Federal Institute forMaterials Research and Testingand at the Department ofChemistry of Humboldt-Universitat, where she wasappointed as assistant profes-sor in 2008 and full professorin 2012. Her research interests
lie in the area of vibrational spectroscopies and microscopies toinvestigate small-scale complex biomaterials.
Chem Soc Rev Dynamic Article Links
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This journal is c The Royal Society of Chemistry 2012 Chem. Soc. Rev., 2012, 41, 5780–5799 5781
In the past seven to ten years, several papers have been
published that have as a subject Raman spectroscopy and imaging
of cells, with nanomaterials serving different purposes, ranging
from the application of new labels in imaging approaches, to the
investigation of cellular physiology. In many cases, nanomaterials
are used to generate optical signals in Raman biomedical applica-
tions, such as single-walled carbon nanotubes (SWCNTs)9,10 and
SERS labels.11,12 In others, the properties of vehicles for drug
delivery or photothermal therapy, such as polymeric, SWCNT,
and gold nanocarriers, are studied.13–15
In several recent examples, nanomaterials have been used to
improve Raman signals of the biological samples themselves,
using surface enhanced Raman scattering (SERS) in the local
optical fields of gold or silver nanoparticles.16,17 Due to the
confinement of the local fields to the immediate proximity of
the nanoparticles, the excitation and scattering volumes are
drastically reduced compared to the actual resolution of the
optical microscope. Thereby, only molecules that reside in the
nanometer-scaled vicinity of the nanoparticles contribute to
the observed spectrum, even if the focal volume defined by the
excitation laser and geometry of the setup is much larger.
Molecules can be introduced with the nanoparticles into cells
and organisms, and the nanoparticles can be traced as labels.
Nanomaterials may also provoke a known cellular reaction
that could then be mapped by Raman imaging, such as the
activation of specific enzymes in phagocytosis, thereby enabling
investigations of such processes.18 Also examples of experiments
can be found where Raman spectroscopic characterization and
classification of cells have been undertaken in order to find out
about the toxicity of the nanomaterial.19,20
Spontaneous Raman scattering microscopy, in non-resonant,
resonant, and surface-enhanced experiments, is extremely versatile
regarding the many alterations in the spectroscopic fingerprints of
cells that can be observed, also over time.4,21–24 Furthermore,
micro-Raman experiments enable the combination of the spectro-
scopic experiments with optical manipulation tools, e.g. optical
tweezers to trap cells, their organelles, or the nanomaterials.25–30
Themolecular information in the Raman spectroscopic fingerprints
is connected with a multitude of cellular parameters. In addition to
providing phenotypic data, that can be used to classify and identify
different cells or tissue types and to discriminate them based on
pattern recognition, the Raman spectra of cells reveal information
about molecular structure, interactions and compositional changes.
Regarding this aspect, Raman microscopy is much different from
other microscopic methods that are used to study nanomaterials in
cells, and that provide mainly morphological information along
with signals from the nanomaterial, such as transmission electron
microscopy, dark field microscopy, or fluorescence microscopy.
Using Raman spectroscopy, cellular parameters that are of
importance to the process of the nano-bio-interaction and to
its consequences for the cellular biochemistry may be identified.
Both parts of the nano-bio-system, the molecules of the cell and
those of the nanomaterial, can be studied.
In the context of this article, Raman spectroscopy provides
different perspectives on the nano-bio-systems. Raman scattering
has become an important tool for analyzing the composition of a
complex mixture of biomolecules such as a cell or even a whole
organism. Further, as a basic tool for biophysical structure
analysis, normal and resonant Raman spectroscopy have been
used for decades to find out about the structure and dynamics of
biomolecules. Therefore, even though the information that is
generated in a Raman spectroscopic experiment is always based
on molecular vibrations, different Raman experiments deliver
information about a biological system at very different scales
regarding molecular and morphological complexity and physical
size. First, the macroscopic scale, represented by imaging
applications in whole animals and assessed through innovative
technical and data analysis approaches, will enable us to
better understand systemic influences of nanomaterials on the
organism. Second, at the microscopic scale, Raman images of
individual cells in culture or in tissues, and Raman spectra from
cellular organelles can improve our insight into alterations
occurring in the biochemical composition or interactions in
complex molecular mixtures. Thereby we may gain insight into
the processes that are associated with the response of individual
cells to nanoparticles. Third, the interaction of the nanomaterial
with cellular molecules takes place at the nanoscale. To a great
extent, it involves Raman studies on the structure and structural
changes of purified or isolated molecular species and model
systems of interest, which cannot be covered in-depth here. Of
this third aspect, we will include here normal Raman and SERS
spectra, providing information on the surface interaction of the
nanomaterials themselves inside the biological system.
We will discuss here Raman studies of eukaryotic (that is,
nucleus containing) cells mainly of animal origin under the aspect,
which type of the information can be retrieved from their Raman
spectra during interaction with nanomaterials. We feel that such a
discussion may help to design and perform decisive Raman experi-
ments that employ the great potential of Raman spectroscopy for
studies on the influence of nanoparticles on cells and organisms.
2 Nanomaterials in the organism
Before nanomaterials, targeted or un-wanted, can enter a cell,
they have to come into its proximity. In an animal, this means
Fig. 1 Motivation (schematic). Aspects that are of interest in the
interaction of nanoparticles with cells, with emphasis on potential
nanotoxicity. Toxicity of the nanomaterial may strongly depend on
the particle properties, and involves many biochemical parameters.
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that the material must enter the organism. Unless the cell
under discussion is an epithelial cell where a nanoparticle
would have direct access, it will encounter different tissues in
the body of the animal, including the blood, or the interstitial
fluid. In many cases, the surface properties and size of the
nanomaterial, the molecules in the body fluids, such as serum
components, and the cell types the material can interact with
will determine its fate in the organism. In this section, we
discuss work on Raman scattering from whole organisms and
ex vivo tissues. The number of Raman experiments that have
been reported with nanoparticles and tissues of animal origin
exceed by far those dealing with plants, probably since the
need for improved tumor diagnostics, imaging and therapeutic
tools has pushed this field of research. Nevertheless, we will
spend a moment summarizing the main directions of Raman
microscopy experiments in plant tissues, before we continue to
review work reported in animals.
2.1 Raman experiments on plant cells
Raman microscopy has become an important tool to study
plant cells as well. As an example, the characterization of plant
cell walls by Raman spectroscopy dates back to the first days
of Raman biospectroscopy.31,32 Cellulose, and also pectin and
lignin have been in the focus of most of the more recent
Raman imaging studies,33–35 in addition to work on other
compounds such as coniferin36 and arabinoxylan.37 Normal
and resonant Raman spectroscopic characterization of the
lipid, chlorophyll and carotenoid building blocks of micro-
algae could have potential use in biotechnology in the future.38–41
Recently, we utilized Raman microspectroscopy for the charac-
terization of molecular and metabolic parameters during the
growth of the pollen tube under varying nutrient conditions
in vitro.42 The results provided evidence of changes in the
chemical composition of the cells during germination and
species-specific utilization of metabolite storage. Nevertheless,
only very few papers report on SERS in plant materials.43–47
A better understanding of the nanomaterial–plant interaction
would be beneficial, particularly because of issues concerned
with nanotoxicity and other physiological aspects. As indicated
in a recent Raman study in tomato plants using conjugates of
SWCNTs and semiconductor quantum dots,48 Raman scattering
may be very useful in the future to elucidate these processes, even
if most of the work reported so far was done with cells of animal
origin. Although many things concerned with nanoparticle
uptake may work entirely differently in plant cells, these cells
share several biochemical aspects with the cells of animal tissues.
Similarly, several Raman spectroscopic investigations have been
carried out on yeast cells that can provide valuable information
about their physiological status, such as viability and cell wall
composition.51–55
2.2 Resonant Raman scattering from carbon nanotubes in
animals
Single-walled carbon nanotubes (SWCNTs) are very promising
tools for bioimaging,10 photothermal therapy, and delivery of
molecular cargo into cells and organs.56,57 By exploiting the
characteristic resonant Raman spectrum of SWCNTs,58 it is
possible to follow the pathway of this nanomaterial in the
body of an animal. When SWCNTs were functionalized with
phospholipids bearing polyethylene glycols (PEG) linked to
an arginine–glycine–apartic acid (RGD) peptide, they spent
a long time in the blood circulation, and were efficiently
accumulated in tumor tissue.14 Evidence of this was provided by
the Raman spectrum of homogenized and dried tissue from the
tumor, liver, kidney and muscle of mice who had received an
intravenous injection of the nanotubes, revealing the characteristic
G band at 1580 cm�1 and the 230 cm�1 A1g radial breathing mode
of the SWCNTs.14 Similarly, Raman spectra of homogenates of the
liver, lung, and spleen tissue have supported toxicological profiling
and could be used to determine the long-term accumulation of
SWCNTs in some organs to even 90 days post-injection of
SWCNTs into the tail vein of mice.59 Interestingly, even though
the SWCNTs were retained for such a long time in the body of the
animals, toxicity in this specific study was relatively low, as was
indicated by biochemical parameters in the serum and other
biological toxicity tests.59 In another toxicology study, the Raman
microscopic characterization of paraffin-embedded, glass mounted
sections of the liver and spleen tissue revealed that non-covalently
PEG-functionalized SWCNTs, as well as oxidized, covalently
functionalized SWCNTs accumulate in both organs, preferably in
the liver, where they were found to persist in Kupffer cells (liver
macrophage cells) for four months.60 Also there, PEG functiona-
lized SWCNTs were not toxic to the animals.60 In vitro toxicity
work by Zhang et al. using the neuronal cell line PC12 demon-
strated that SWCNTs show concentration-dependent and surface
coating-dependent cytotoxicity, with PEG-functionalized SWCNTs
being less cytotoxic than uncoated SWCNTs.61
A major advantage of Raman spectroscopy for imaging and
characterization of biological tissues lies in the possibility to use
wavelengths in the NIR for excitation. The long penetration depth
and low autofluorescence in this spectral region allow for Raman
imaging of whole small animals. Zavaleta et al. reported imaging
of SWCNTs in tumors in nude mice at a depth of 2 mm in the
animal, with raster scan images of the SWCNT G-band intensity,
taken at a step size of 750 mm and 3 s accumulation per
spectrum.12,62 Thereby, small tumors were screened in reasonable
amounts of time. The data from this in vivoRaman imaging study
confirmed the above-cited work of Liu et al. on tissue homo-
genates, who had shown that RGD-functionalized SWCNTs were
targeted to integrin-positive tumor tissues more efficiently than
plain SWCNTs.14 In vivo imaging enables the observation of the
same animal over time. While whole Raman images of organs and
tumors can be taken at specific time points after administration of
SWCNTs,62 time-resolved Raman spectroscopy at the millisecond
time scale can be used for real-time detection of carbon nanotubes
that circulate in living animals.63 After intravenously administering
these nanostructures in the tail vein of the rat, their circulation was
observed by resonant Raman scattering in blood microvessels of
an intact rat ear.63 In ex vivo studies on tissues of mice, Raman
spectroscopy detected SWCNTs in the intestine, feces, kidney,
and bladder, suggesting excretion and clearance of the SWCNTs
via the biliary and renal pathways.64
2.3 SERS tags in living animals
Similar to the detection of SWCNTs, also other strong Raman
scatterers can be observed by in vivo Raman spectroscopy in
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the bodies of live animals. SERS nanoparticle tags, that is,
metal nanostructures with adsorbed molecules providing
a characteristic SERS spectrum, and encapsulated with a
polymer shell, can be introduced into animals and targeted
to tumors as well. As shown by Qian et al., who injected
subcutaneously and intramuscularly in mice SERS tags
consisting of gold nanoparticles bearing malachite green as a
reporter molecule and thiol-modified PEG as a stabilizing
shell, malachite green SERS signals from approximately
1–2 cm depth in the tissue could be detected using 785 nm
excitation light.11 The PEG-ylated SERS nanoparticles were
brighter than NIR emitting semiconductor quantum dots.
They were conjugated with tumor marker-specific antibody
fragments and subsequently detected in a tumor model.11
Whole body imaging of SERS labels in mice was also reported
for commercial, glass-coated SERS labels,12 and their systemic
toxicity was evaluated.65 Later on, the same group reported
imaging of ten different of these SERS labels upon subcutaneous
injection in ten separate areas.66 Multiplex imaging of the
liver, where five different SERS labels had accumulated after
simultaneous intravenous injection.66 Employing resonant
excitation of the reporter dye will add to the SERS enhance-
ment provided by the metal nanoparticles, and is useful
for in vivo detection. For example, mixed-monolayer gold
nanorods, coated with PEG polymers and visible- and NIR-
absorbing dyes could be used for multiplexed detection at
low toxicity.15,67,68 In vivo detection of these nanostructures
is very useful, as they are also used for photothermal tumor
therapy.67,68
Caenorhabditis elegans (C. elegans), a small, transparent,
well-characterized nematode49 (Fig. 2A), is a very convenient
complex system for spectroscopic studies, including whole
body imaging by infrared spectroscopy69 and stimulated
Raman scattering microscopies.70–72 C. elegans stores lipids
in granules in the intestine. The dye Nile red interacts with
such lipid granules through lipophilic or hydrophobic inter-
actions. When attached to silver nanoparticles, the nano-
particles are also targeted to the lipid granules, thereby
displaying the lipid droplets based on the SERS spectrum of
Nile red.50 Images can be generated in a confocal microscope,
setting the detected spectral region to the spectral range
covered by the SERS spectrum of Nile red (Fig. 2B).50 In
their study comprising fifty C. elegans samples, Charan and
co-workers showed that the silver nanoparticles lead to a
SERS signal from the lipids in their environment. This signal
can be imaged in a similar way as that of Nile red, by selecting
the spectral range of the CH stretching modes as an integral
signal for imaging (Fig. 2C). This is one of the very few
examples, where intrinsic SERS signatures from the tissue or
cell have been used for whole body Raman imaging. Small
animals with well-resolved microstructure can provide better
insights into the possible routing of nanomaterials, also the
distribution in different cell types. As another example, Wang
et al. described the distribution of gold nanoparticles that were
labeled with para-mercaptobenzoic acid (pMBA) in zebrafish
embryos using the SERS signal that is collected from the
different regions of the embryos and in different stages of
their development.73 The nanoparticles were micro-injected
into the one-cell stage. When a mixture of two kinds of gold
nanoparticles, one bearing pMBA, the other mercaptopyridine
were introduced into the embryo, the distribution was very
similar, as evidenced by the constant intensities of their
contributions in the spectrum.73
In order to follow the paths of nanomaterials by in vivo
Raman spectroscopy, small non-vertebrate model organisms
such as C. elegans provide a number of advantages over
mammals, since the penetration depth of the excitation and
scattering light will always include the whole animal. Further-
more, the application of higher magnification in a Raman
microscope could enable the retrieval of some histological
information or even data on subcellular localization in the
same experiment.
For studies of larger animals, for example small rodents in
the laboratory, Raman imaging of the whole organism may
require several different types of experiments. While confocal
approaches can be applied for the characterization of the
skin74 and subcutaneous regions11,66 spatially offset Raman
scattering (SORS) is a very promising technique for probing
deeper layers of tissue in the body.1,75,76 This has been
illustrated also in many studies on bone by Morris and
Matousek,77,78 including tomographic applications.79 Other
strong Raman scatterers, such as accumulations of SERS
active nanoparticles with characteristic spectral signatures
in deeper tissue layers, can be detected by SORS. First
proof of this was provided by Stone and co-workers,
who recovered Raman signals from SERRS tagged nano-
particles non-invasively from chunks of tissue,80 later also
from samples on the order of 45–50 mm thick by surface
enhanced spatially offset Raman spectroscopy (SESORS).81
Signals from four different types of commercial SERS tags
could also be imaged based on SESORS data.81 Van Duyne
Fig. 2 Whole body Raman imaging in the nematode Caenorhabditis
elegans. (A) Micrograph of C. elegans (reprinted with permission from
Jorgensen and Mango49). (B, C) Images of the lipid granules using
lipid targeting Raman probes consisting of silver nanoparticles and
Nile red using the signal of lipids (B), and of Nile red (C) (reprinted
with permission from Charan et al.50).
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and co-workers combined the high detection sensitivity of
SERS with the in vivo potential of SORS for quantitative
transcutaneous glucose measurements in living rats.82 The
experiments were conducted with an implanted solid SERS
sensor without additional reporter molecules, out-of-resonance,
and they illustrate that SESORS imaging could also be used to
describe the native, intrinsic chemical environment of individual
nanoparticles or accumulations of nanoparticles in live animals.
Thereby, a SESORS approach could not only help to study the
distribution of nanomaterials in living animals, but also in
the description of the biochemical environment of the materials
in the organism.
As illustrated by the distribution of SERS active nano-
particles in the zebrafish embryos,73 developing systems,
organisms or individual differentiating cells provide particular
challenges for nanotoxicology research, as they display high
phenotypical, morphological and ultrastructural dynamics
that can result in physical re-distribution of nanostructures,
and changes in the cytotoxicity with developmental stage.
Accumulation in specific organs of the body implies the
interaction of a nanomaterial with individual cells. The work
cited so far did not discuss the interaction at the cellular level,
but the main portion of this article, to follow here, will focus
in detail on the interaction of the nanomaterials with the
cellular ultrastructure.
3 Nanomaterials inside cells
3.1 Endocytosis and endosomes
To study the reaction of cells to nanoparticle exposure and
how particles are internalized, the investigation of the uptake
mechanism is the first crucial step. In fact, the uptake of a
material will determine its fate in the cell, as it influences the
position in the cellular architecture, the routing within the
cellular ultrastructure, and the potential processing pathways.
In some, although few, Raman experiments, nanoparticle
injection was chosen to administer metal nanoparticles into
cells for SERS experiments, to avoid interaction of the nano-
particles with components from cell culture medium and to
achieve direct targeting of the cytosol,19 or to reach one
specific cell.73 Others have used electroporation for the direct
uptake of nanoparticles.84–86
In contrast, in the natural situation, nanomaterials enter
eukaryotic cells of animal origin using a variety of ways.87–90
The physicochemical properties of the nanomaterial, e.g. size,
shape, surface charge and modification, determine their
uptake efficiency and localization.91–94 Some carbon nano-
tubes were observed to directly penetrate the membrane of
cells, similar to needles,56,95 and also small PEG-functionalized
gold nanoparticles were observed to roam free in the cytosol,
suggesting their direct uptake.89 An important uptake
mechanism for nanomaterial is endocytosis. Endocytosis is
sensitively regulated, and serves both the uptake of nutrients
as well as signaling in the cell. By endocytosis, the cell can take
up macromolecules, liquids and pathogens, and also most types
of artificial nanoparticles.96,97 When the material approaches
the surface of the cell, the cellular membrane invaginates,
and forms a membrane vesicle inside the cell, the endosome.
The transmission electron micrograph in Fig. 3A illustrates the
invagination of the cellular membrane around a gold nano-
particle in an epithelial cell. Inside the cell, the endosomes,
including their cargo, are transported along a network of
actin filaments and microtubules. Endosome formation varies,
depending on the type of the cargo and on its size (Fig. 3B):
after interacting with surface receptors or specific regions in
the membrane of phagocytic cells, large, micron-sized particles
are taken up by phagocytosis, liquids by macropinocytosis.
The endocytic process of nanoparticles o300 nm is usually
mediated by proteins in the cell membrane, the most impor-
tant mediators being clathrin and caveolin.98,99 The nano-
particles interact with receptor molecules in the membrane, or
membrane rafts displaying a specific lipid composition. A
recent critical review discusses these and other mechanisms
associated with endocytosis and the processing of endosomes
in detail.96 Inside the cell, most of the nanomaterial resides in
endolysosomal structures. In Fig. 4, transmission electron
micrographs of late endosomal and/or lysosomal vesicles are
shown, containing an accumulation of gold, silver, and silica
nanoparticles, as well as DNA-functionalized SWCNTs. The
TEM micrograph displayed in Fig. 4F shows SWCNTs in
membrane-enclosed vesicles, which suggests an endocytotic
transport mechanism for these particular SWCNTs.9 In order
to reach other cellular organelles, such as the nucleus, the
endocytosed nanoparticles would need to escape from the
endosomal vesicles. Strategies for attaining endosomal escape,
as they are pursued, e.g., by viruses and bacteria have been
summarized in ref. 96.
Fig. 3 Uptake mechanisms of nanoparticles. (A) Endocytosis of a
gold nanoparticle by an IRPT epithelial cell (adapted from Kneipp
et al.24). (B) Schematic: depending on the cell type and material
properties, the particle uptake occurs via phagocytosis, pinocytosis
or receptor-mediated endocytosis.
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In the following sections we will illustrate how the process of
endocytosis and its effects on the cells can be studied by
Raman scattering. Specifically, the existence of endosomes
inside the cell has been evidenced by the following kinds of
experimental results:
(i) The accumulation and re-distribution of Raman spectro-
scopic signals that can be attributed to the nanomaterial,
e.g., ref. 9, 100, and 101.
(ii) Changes in surface-enhanced Raman scattering intensities
that indicate changes in the plasmonic properties of gold and
silver nanoparticles related to processing and aggregation in
aging endosomal vesicles.4,24
(iii) The ability to monitor endosomal transport of metal
nanoparticles over time.102,103
(iv) Raman-based measurements of pH in the environment
of gold nanoparticles, indicating pH values that are typical of
different endosomal stages and monitoring of these changes
over time.104,105
(v) Evidence of a biochemical composition that is charac-
teristic of processes associated with phagocytosis based on
resonance Raman data e.g., ref. 18.
(vi) Evidence of a biochemical composition, and molecular
processing that is characteristic of endosomes and lysosomes
based on normal Raman scattering and SERS e.g., ref. 24
and 106.
While items (i)–(iii) focus on spectral evidence that are
a direct consequence of the quality of the nanomaterials,
the latter three (iv)–(vi) comprise an interrogation of the
biological component, using the compositional and structural
information that is contained in the Raman spectra from
the cells.
3.2 Observing nanomaterials inside cells with Raman
spectroscopy
Many nanomaterials have specific optical properties that can
result in a higher Raman cross section, often due to resonant
Raman (RR) scattering. Low-dimensional carbon nanostructures,
in particular single-walled carbon nanotubes (SWCNTs) (Fig. 5A
and B), but also multi-walled CNTs, and single-walled carbon
nanohorns (SWCNHs) (Fig. 5C) can be observed in the cells
based on their strong resonant Raman spectra, the most
prominent example being SWCNTs.9,58,101,107 Other examples
of nanomaterials that can be detected by RR or normal Raman
scattering are drug or dye labeled, or unlabeled nanoparticles of
polymers (Fig. 5D–F), gold, silver, or silica.13,108–110 In the case
of silver or gold nanostructures, the nanoparticles provide high
local fields in their very close vicinity, and surface-enhanced
Raman scattering (SERS) leads to high Raman signals.16,111
The high intensity of spectral contributions from the molecular
or nanomaterial species in the RR or SERS case enables
probing of the nanoparticles’ properties inside the cells at low
concentration, and selective imaging of the nanomaterial.
Several studies report on the uptake and distribution of
SWCNTs in cells, evidenced by the strong and characteristic
RR spectrum.Heller and co-workers imaged the spectral signature
of SWCNTs encapsulated by an oligonucleotide and mapped
their localization in 3T3 fibroblast cells (Fig. 5A and B).9
Fig. 4 Nanoparticles in endosomes. TEM images of ultramicrotome slices of eukaryotic cells show metal nanoparticles (A–C), silica
nanoparticles (D, E) and SWCNTs (F) with respect to the cellular ultrastructure. Mouse fibroblast cells were incubated with gold nanoparticles
for 3 (A) or 24 hours (B). Silver nanoparticles (C) are enclosed in endosomes after 3 hours of incubation. (D, E) Silica nanoparticles were taken up
into 3T3 fibroblast cells after a 24 h-exposure (adapted with permission from Drescher et al.83). (F) TEM images of vesicle-bound DNA–SWCNTs
in murine myoblast stem cells (scale bar represents 1 micron; reprinted with permission from Heller et al.9).
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TEM evidenced accumulation of the SWCNTs in perinuclear
lysosomes (Fig. 4F).9 A similar nanomaterial, single-walled
carbon nanohorns (SWCNH), was studied by Tetard and
colleagues.101 SWCNH provide strong and distinct Raman
spectra that can be clearly detected when the structures reside
in macrophage cells (Fig. 5C).
Also functionalization dependence of SWCNT uptake was
studied by Raman microspectroscopy. In particular, localiza-
tion of SWCNT carrying surface modifications with PEG
chains of different lengths was imaged.112 PEG-functionalized
SWCNTs were also studied by Raman microscopy in neuronal
PC12 cells.61
The group of examples for intracellular nanoparticulate
labels with distinct, strong Raman signatures comprises many
different types of SERS hybrid labels. They consist of different
gold or silver nanostructures, such as spherical nanoparticles,
nanorods, nanoshells and others, that are combined with so-called
reporter molecules, which provide a strong characteristic Raman
signature to the nanomaterial.
When SERS labels are used to highlight cellular structures,
analogously to dyes or quantum dots in fluorescence labeling,
they can be followed and imaged inside a cell based on the
SERS spectrum of their reporter molecule. Dye reporters
include indocyanine green,113 crystal violet,114,115 methylene
blue,109,114 rhodamine 6G,116 eosin,109 Giemsa109 and others.
Also ‘colorless’ molecules have been used as Raman reporters.
Often, they are attached to gold or silver nanoparticles by a thiol
group. Popular candidates are mercaptopyridine, aminothio-
phenol, para-mercaptobenzoic acid, or thiocresol.104,115,117–125
Since these molecules will change the surface charge of nano-
particles, they can in principle result in different uptake behavior
of the cells.119,126 In all these experiments, the distribution of
reporter SERS signals can provide an indication for the inter-
action of the nanostructure with the cell. For example, as
illustrated in Fig. 5H–J mixing of different SERS nanoprobe
populations carrying different reporters upon subsequent incuba-
tion with cells can be imaged using multivariate analyses.120
The uptake, accumulation and re-distribution of SERS labels
in cells can be monitored over the course of many hours and
days. In Fig. 6, the results of an experiment are shown where the
time-dependent uptake of gold nanoparticles and their intra-
cellular distribution were studied using SERS nanoprobes
functionalized with para-aminothiophenol (pABT). Here,
mouse fibroblast cells were incubated with citrate-stabilized
gold nanoparticles coated with pABT (100 nM) for 30 minutes.
After particle incubation, cells were washed thoroughly with
PBS buffer and covered with fresh cell culture medium. In
principle all cell samples were exposed to the same amount
of nanoparticles for the same time. SERS nanoprobes were
internalized into 3T3 fibroblast cells by passive uptake via
fluid-phase. The Raman measurements were conducted after
different time-points ranging from 30 minutes to 5 days
(schematic in Fig. 6A).
Raman intensity maps and SERS spectra of single live cells
incubated with pABT gold nanoparticles are depicted in Fig. 6B.
To construct these images, SERS spectra were acquired by raster
scanning over an individual cell in steps of 2 mm. The Raman
intensity maps in Fig. 6B are representative for each time-point
and illustrate the local distribution of the pABT gold nanoprobes
over the entire cell. To visualize the intracellular SERS nano-
probes, the relative signal intensity of the C–S stretching
vibration of pABT at 1085 cm�1 is plotted. Already after
30 minutes of incubation, pABT is detected inside the fibro-
blast cells in the close proximity to the plasma membrane.
With increasing incubation time (3 hours to 2 days), particles
Fig. 5 Confirming the presence of nanomaterials inside cells using
Raman scattering. (A) Combined Raman and fluorescence spectra of
DNA-SWCNTs in live 3T3 fibroblast cells after 8 days in culture. The
corresponding Raman intensity map of the radial breathing modes of
nanotubes in 3T3 cells is shown in (B) (scale bar: 20 micron; reprinted
with permission from Heller et al.9). (C) Raman spectra of single-
walled carbon nanohorns (SWCNHs) (black spectrum) and SWCNHs
within a macrophage (red spectrum, L1) 7 days after exposure
(reprinted with permission from Tetard et al.101). (D–F) High-resolution
Raman imaging of a phagocytosed latex bead in a neutrophil (Copyright
2005 National Academy of Sciences, USA). Raman intensity maps (6.7�6.7 mm2) of the 1000 cm�1 band of polystyrene (D) and a corresponding
cluster analysis image (E) are shown. The average Raman spectra are
extracted from the blue (spectrum 1), magenta (spectrum 2) and yellow
(spectrum 3) clusters displayed in (F). Spectrum 1 shows a strong signal
of polystyrene (reprinted with permission from van Manen et al.108).
(G–J) Duplex imaging using two different SERS hybrid labels in a 3T3
fibroblast cell (reprinted with permission from Matschulat et al.120.
Copyright 2010, American Chemical Society). (G) Photomicrograph of
the cell (scale bar: 4 micron), (H) chemical image, based on one intensity
from each of the labels (I, J) images obtained using hierarchical cluster
analysis and K-means clustering, respectively, with the spectral informa-
tion in the region 300–1700 cm�1, based on three spectral classes.
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are evenly distributed in the cytosol and accumulate in the
perinuclear region in the course of endo-lysosomal processing.
The Raman intensity map acquired after 2 days of incubation
do not show signals in the region of the cell nucleus. After
5 days of incubation and several cell divisions the intracellular
signal intensity of pABT and the amount of detected Raman
spectra per cell decrease significantly since the primary vesicles
are distributed over more cells. During cell division, the
cytoplasm is divided between the two daughter cells. This dilution
of SERS nanoprobe-containing endosomes is a trivial effect on cell
lines, and has been observed in other studies as well.126 However,
observing particle distribution between differentiating cells in
developing tissues may help to understand better the distribution
of cytoplasmic and nanomaterial material in developing
organisms,50,73 as was already discussed in the context of
whole body Raman imaging in Section 2.3.
Selected SERS spectra of different stages of the endo-lysosomal
pathway are illustrated in Fig. 6C. Independent of the incubation
time, pABT is identified in each spectrum. The spectra of the
shorter incubation times are dominated by characteristic Raman
bands of pABT. After 1, 2 and 5 days of incubation, cell-specific
Raman bands are detected in addition to the pABT Raman
signature. This is attributed to the replacement of particle-bound
pABT by cellular molecules with increasing incubation times. Since
the Raman spectra show the same pABT signature after 30 minutes
and 5 days, we can assume that pABT is stable during cellular
processing. Furthermore the signal intensity is increased from
30 minutes to 48 hours of incubation, which is correlated with a
higher SERS enhancement. This can be assigned to changes of the
particle aggregation with increasing incubation times due to multi-
vesicular fusion (see also TEM images of gold nanoparticles in
Fig. 4). The SERS nanoprobes used in these experiments induce
no cytotoxic effects as evidenced by XTT assay.120
We would like to point out the difference of intracellular
application of SERS labels to the many experiments that are
done with SERS labels in immuno-cytochemistry, mostly to
detect cell surface receptors in individual cells or antigens that
become exposed after fixation of a tissue.127–134 Similarly, we
have omitted to include a discussion here on the possibilities of
using SWCNTs for labeling, as shown in e.g., ref. 135. We
have not included these immunocytochemistry studies in our
discussion here, as they involve the targeted interaction of the
nanomaterial with the surface of cells for diagnostic purpose,
determined by an antibody or peptide, and largely independent
of the properties of the nanomaterial.
3.3 Modification of nanomaterials inside the cells
The biological system can exert great influence on the physico-
chemical properties of a nanomaterial, e.g., by chemical reactions
taking place at the surface of nanoparticles, by adsorption of
molecular species, resulting in changes of surface charge,
solubility, and aggregation behavior. Changes in nanoparticle
surface modification can be a result of processing of the nano-
material by the cell. Considering the function of endolysosomes
as the cell’s waste disposal and the abundance of proteases and
other hydrolyzing enzymes taking care of the degradation of
biomacromolecules, it seems obvious that nanomaterials will
be modified in these cellular compartments as well. Raman
experiments employing SERS provide evidence of molecular
surface modification of gold and silver nanoparticles. For
example, Oyelere et al. introduced peptide-modified nanorods
into cells, where they monitored the intensity of the C–N
stretch band of a thioalkyl-triazole linker for a targeting
peptide at 760 cm�1.106 From a decrease in intensity
they conclude that the conformation of the linker must
Fig. 6 Time-dependent study of nanoparticle uptake and their intracellular distribution by the use of SERS nanoprobes. (A) Experimental
design. Mouse fibroblast cells were exposed to gold nanoparticles coated with para-aminothiophenol (pABT, 100 nM) for 30 minutes. Raman
measurements were conducted at different stages of incubation. (B) Corresponding Raman chemical maps taken at a step size of 2 micron visualize
the distribution of nanoparticles inside the cells (using the intensity of the n(C–S) vibration of pABT at 1085 cm�1). (C) SERS spectra of
intracellular pABT gold nanoparticles after different time-points. An excitation wavelength of 785 nm was applied in all experiments with a laser
intensity on the sample of B8 � 104 W cm�2 and an acquisition time of 1 s.
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change, when the nanoparticles with the attached peptide
enter the cells.106
Similarly, the molecules that are used as reporters in SERS
labels may be modified or displaced from the nanoparticle
surface. Sirimuthu and co-workers reported the degradation
of the signal from reporter molecules on the surface of silver
nanoparticles, depending on whether the reporter molecules
were attached by chemisorption to the silver by a mercapto
function, as with 4-mercaptobenzoic acid, or by physisorption,
as in the case of the dye Rhodamine 6G.121 They observed the
signal of Rhodamine 6G physisorbed to silver nanoaggregates
to disappear after 8 hours in the cell culture medium, and
after B12 hours in Chinese hamster ovary and MG-63 cells.
It is remarkable that the SERS signature from the dye was
not replaced by SERS signals from the cellular molecules
could be detected instead in these experiments but disappeared
completely,121 contradictory to work with labeled and unlabeled
silver nanoparticles in cells, where signals from cellular molecules
have been reported, as will be discussed in detail below.4,119
In phagocytes, which can take up particles in the micron-
size range, drastic changes can be observed in the Raman
spectra of polymer materials that are being ingested. Using
RAW 264.7 macrophage cells, van Apeldoorn et al. could show
that large micron-sized particles of the polymer poly(lactic-co-
glycolic acid) (PLGA) were degraded in a heterogeneous way
B1–2 weeks after internalization into phagosomes, with a rapid
degradation in the center as compared to the outer parts.100
PLGA has a Raman spectrum with intense bands at 1768 cm�1
characteristic of ester bonds, and several bands that belong to
glycolic acid at 845, 890, 1274, and 1424 cm�1. Based on the
PLGA Raman spectra van Apeldoorn and co-workers showed
that ester hydrolysis occurs throughout the phagocytosed
particles, with a selective loss of glycolic acid units. They also
showed that molecules from the cell, such as proteins and
lipids, may travel into voids that are brought about by the
degradation process inside the spheres.100 Degradation of
microspheres from other materials inside RAW 264.7 cells
was studied by the same group.136 This work includes the
quantification of dextran in phagocytosed cross-linked
dextran hydrogel microparticles using an intensity ratio from
their Raman spectrum, and led to the result that dextran
particles degrade by swelling. In contrast, poly(ethylene glycol)-
terephthalate–poly(butylene terephthalate) (PEGT–PBT) block
copolymers did not show changes in their Raman spectra when
ingested by the macrophage cells.136
Degradation of polymer particles can follow drastically
different patterns depending on their size, on the cell type
and uptake. In contrast to the micron-sized PLGA spheres
studied in macrophages by van Apeldoorn et al.,100 PLGA
nanospheres that were endocytosed from liquid culture medium
by non-phagocytosing HeLa cells were found in the perinuclear
region B2 hours after incubation, suggesting their interaction
with the endoplasmic reticulum and Golgi apparatus.13 When
the incubation with the PLGA nanospheres was followed by
chase incubation with regular culture medium, degradation of
the nanoparticles was found after 3 hours, as indicated by lipid
and phospholipid spectral contributions, in particular by the
frequency change in the carbonyl stretching vibration that
shifted from the frequency characteristic of the PLGA ester
linkage around 1765 cm�1 to lower frequency typical for lipids
and phospholipids B1740 cm�1.13 In a similar fashion, the
Raman signals from poly-caprolactone (PCL) nanoparticles were
reported to decrease concomitantly with an increase in spectral
features that could be attributed to membrane structures possibly
belonging to late endosomes associated with the Golgi.13
Depending on the nanomaterial and the basis of its char-
acteristic Raman spectrum, the influence of the biosystem on
the Raman spectra of the nanomaterial can vary greatly.
Changes due to the interaction of the nanoparticles with
components in the cellular environment can be more subtle
when the material is not chemically degraded. In some materials,
optical properties may change drastically with their aggregation
due to accumulation in endosomal structures. This will be
discussed in the following using the examples of SWCNTs and
of plasmonic nanoparticles.
The Raman spectrum of SWCNTs is determined by the strong
coupling between electrons and phonons of the nanotube,
occurring if the incident or scattered photons are in resonance
with an electronic transition between van Hove singularities in
the valence and conduction bands. The resonant Raman spectra
are very sensitive to the nanotube diameter and chirality,58 and
Raman scattering can be used to assess these properties in single,
isolated SWCNTs.107 In some types of SWCNT bundles, the
typical band structures may be altered through close nanotube–
nanotube parallel contacts.137 In the resonant Raman experiment,
the modified resonance conditions change the observed specific
radial breathing modes (RBM) of the nanotubes138,139 in the
low-frequency region of the SWCNT spectrum.58
The possibility to characterize isolated SWCNTs enables
their observation inside biological cells and their interaction
with other SWCNTs. An example illustrating this is the
application of chemical stains to cells that incorporated
SWCNTs. Heller and co-workers found that when 3T3 mouse
fibroblast cells that had endocytosed SWCNTs and were
subsequently stained with hematoxylin and eosin, the RBMs
of the SWCNTs displayed an intensity increase in one RBM at
267 cm�1, indicative of a shift in the interband transitions.9 At
the same time, the fluorescence decreased, leading the authors
to conclude that the SWCNTs must be in direct contact.9,138
Since the characteristic RBM contribution at 267 cm�1 had
been absent in unstained cells, the staining procedure that
involves several chemicals was held responsible for causing
SWCNT–SWCNT contact. Even though this was induced by
externally applied stains after endocytosis of the SWCNTs, the
example illustrates that chemical modification of SWCNTs in
harsh lysosomal environments could in principle be detected in
the Raman spectrum. When PEG-functionalized SWCNTs
were studied ex vivo in mouse tissues in liver macrophages,
equal concentrations of oxidized SWCNTs gave lower signals
than unoxidized SWCNTs due to covalent damage to the
carbon atom networks in the oxidized sample.60
In the case of gold and silver nanoparticles, not their own
Raman spectrum is usually observed, but the SERS spectrum
of molecules in their close proximity. High SERS signals are mainly
caused by high local optical fields around the nanostructures.140–145
The dependency on the local fields implies that the SERS
enhancement strongly depends on the morphology (e.g., the
size, shape, or aggregation) of the nanoparticles. Therefore, the
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spectral information that can be obtained of the biological
component is coupled very strongly to the physicochemical
properties of the nanoparticles. In a SERS experiment, this
strong connection expresses in the following characteristics:
(i) the observed SERS intensities vary with the enhancement
factor, which depends critically on the ability of the nanoparticles
to form aggregates,146,147 (ii) the enhancement depends on the
type of aggregates, particularly on the gap size between nano-
particles and their geometries,148–151 and (iii) the average intensity
will depend on the number of nanoparticles or nanoaggregates
in the probed volume (compare also Fig. 6B). Therefore, even
if the Raman spectrum may not provide direct spectral
evidence of the material itself, the SERS data can be used to
gain information on the behavior of nanoparticles, such as
aggregation and re-distribution in a cell.
To illustrate the first two of the issues itemized above, the
results of an experiment are shown, where gold nanoprobes
were applied in the epithelial cell line IRPT.24 The nano-
particles were added to cell culture medium and removed after
30 minutes. Then, in a series of samples taken at different
time points, the SERS signal generated in the vicinity of the
nanoprobes was observed (Fig. 7A–C). We found the signal
strength of the SERS to vary significantly for different time
points after the endocytosis of the nanoparticles had taken
place. This gives information on the SERS enhancement
and thereby indicates that the morphology of the gold nano-
structures inside the endosomal vesicle must have changed.
Specifically, aggregates of nanoparticles must have formed24
(compare item (i)). In accord with theoretical predictions we
have shown recently experimentally that the enhancement of
individual gold nanospheres is very low around 102, but that
the formation of aggregates can change the enhancement factor
by many orders of magnitude.147
Item (ii), the signal strength as a function of nanoaggregate
morphology and aggregation was investigated by a TEM
study carried out in parallel samples.24 In our experiments,
the spectra obtained after 120 min (Fig. 7B) exhibited the
strongest signals. This improvement in signal strength correlates
with the formation of small gold aggregates, at that time mostly
dimers and trimers.24 TEM images indicated that later in the
time course after 180 minutes, inter-particle distances in the
gold nanoparticle accumulations were greater than in the
dimers and trimers observed after 120 min (see the arrow in
Fig. 7D). The higher interparticle distances, which are probably
due to multivesicular inclusions, may lead to a decrease in the
overall SERS intensity again (Fig. 7C).
Even though many nanomaterials do not show plasmonic
properties and cannot be used as SERS probes, understanding
better the interaction of silver and gold nanostructures with
cells will provide significant progress, considering that silver
nanoparticles have become ubiquitous in our everyday life yet
can display high cytotoxicity.152–155 Furthermore, the plasmonic
nanoparticles might serve as model systems to a certain extent, as
some general principles about the interaction of nanoparticles
with cells may hold for other materials as well.
4 Spectral evidence of the biological component
In many applications, Raman scattering has been used to observe
nanoparticle-bio-interactions based on the Raman spectroscopic
information from the nanoparticles. This is probably the case
because questions posed by biotechnology, imaging, and the
need for more efficient labels have served as a major driving
force for research in the area of nano-bio-Raman. One should
be aware that in some experiments, changes in the properties of
the material are difficult to detect based on the Raman spectrum
of the material itself. This can be due to insufficient sensitivity to
minute amounts of nanoparticles in the biomatrix, due to the
different conditions under which Raman experiments on cells
and tissues take place compared to experiments on some
inorganic materials, or a broader, indistinct Raman spectrum
that would become less obvious in the context of sharp bands
from the biological molecules in its surroundings, e.g. in the case of
amorphous silica nanoparticles.156 In such samples, observing
changes in the biochemical composition, in the molecular processes
and interactions within the cellular architecture becomes of vital
importance for delineating the influence of the nanomaterials.
In comparison to approaches in molecular biology that
usually rely on a specific component of the cellular systems,
e.g., protein expression patterns, generation of ROS, changes
Fig. 7 (A–C) Typical SERS spectra from cells of the epithelial cell line IRPT after incubation with gold nanoparticles, excited witho3 � 105 W cm�2
at 785 nm, collection time 1 s. The incubation time, including a 30 min nanoparticle pulse, is indicated in each panel. (D) Transmission electron
micrograph of IRPT cell showing gold nanoparticles in endosomal structures. Arrows point at large distances between the nanoparticles, probably
brought about by multivesicular inclusions (scale bar: 250 nm). (Reprinted with permission from Kneipp et al.,24 Copyright 2006, American
Chemical Society).
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in metabolic activity, or proliferation of the cells, the Raman
spectroscopic fingerprint provides a combination of all the
‘phenomic’ information from all molecules that are contained
in a probed sample volume.
4.1 Chemical composition of phagocytic cells in the presence of
nanomaterials
Phagocytic cells are an important cell type, considering that
nanomaterial which enters an organism is likely to encounter
cells of the immune system, which are specialized in ingesting
foreign materials. Different uptake mechanisms are responsible
here than in the receptor-mediated endocytosis observed for the
smaller nanoparticles, and large entities can be taken up,
including large particles and agglomerates (Fig. 3). Phagocytes
such as macrophages, granulocytes and others engulf ingested
material, usually pathogenic particles inside their phagosomes,
and then destroy the phagocytosed particles. An enzyme
complex, NADPH oxidase is needed to produce oxidants for
the degradation of the foreign material. When the phagocyte is
active, the enzyme complex assembles on the phagosomal
membrane to produce reactive oxygen species, and is associated
with a cytochrome unit, flavocytochrome b558.
Puppels, Otto, Sijtsema, van Manen and co-workers
have pursued a great number of studies on phagocytic cells,
comprising Raman spectra of heme containing peroxidases,
cytochrome b558 in different types of granulocytes,18,157,158
lipid and protein composition,108,159 and foam cell formation
of macrophages.136 In one of the first papers on this issue,
Puppels et al. stated, ‘‘monitoring the phagocytotic process
and digestion of foreign objects {would be an} . . .exciting
prospect’’.157 Meanwhile, in fact several new observations
were made in the process of phagocytosis using non-resonant
and resonant Raman microspectroscopy, and many aspects
have been investigated.18,108,157–159 More recently, Chang
and co-workers reported the quantitative Raman microscopic
observation of the phagocytic degradation of ingested yeast
cells, along with a temporal characterization of phagocytic
NADPH oxidase.160
In Fig. 5D and E, we had shown the work of van Manen
and co-workers, who had observed Raman spectra of latex
microparticles in neutrophilic granulocytes.108 Raman spectra
measured in the proximity of these phagosomes revealed also
the presence of lipid bodies, which contained high contributions
from arachidonate.108 Differences between the lipid bodies
of cells deficient in a NADPH oxidase subunit and wild type
cells were found, which led to the conclusion that this flavo-
hemoprotein mediates the assembly of the lipid bodies around
the phagosomes.
Macrophages, upon ingestion of micromaterial, can convert
into foam cells, that is, cells that are filled with lipid droplets.
Their high content in unsaturated lipids and cholesterol
and cholesterol esters was also shown by non-resonant
Raman imaging.136 The relatively large body of Raman
literature on the biochemistry of phagocytosis illustrates
that in addition to spectroscopy and imaging technologies,
systematic work with suitable, consistent in vitro models
may pay off, when a specific aspect of nano-bio-interaction
should be clarified.
Differences in the SERS spectra obtained from the mole-
cules in the enhanced local fields of nanostructures over
time have shown that SERS approaches are feasible for the
characterization of changing cellular environments and useful
for intracellular applications.16,24,102 Using SERS spectra
generated due to the presence of endocytosed gold nano-
particles, the endosomal composition in phagocytic cells can
be studied.
When gold nanoparticles were added to the culture medium
of the macrophage cell line J774, and spectra were measured
at different time points after incubation (60 min, 120 min,
180 min), a great variety of SERS spectral patterns was found,
indicative of many different molecular species present in the
endosomes of the macrophages, that changed with incubation
time.24 Nevertheless, one specific spectral signature appeared
at all time points, with exception of the very late, lysosomal
stage (22 hours incubation). The spectrum is displayed
in Fig. 8, together with a bright field image of J774 cells
containing large endolysosomal accumulations of gold nano-
particles, displaying as black spots. Almost all bands in the
spectrum are characteristic of adenosine phosphate and show
contributions from all constituents of this nucleotide (adenine,
ribose, and phosphate161). A comparison with SERS and
normal Raman data of pure adenosine monophosphate
(AMP) and adenosine triphosphate (ATP) from the literature
suggested a prevailing contribution from AMP, since triphos-
phate and diphosphate markers are lacking. Interestingly, the
acidification and pH regulation of endosomes are achieved by
an ATP-dependent proton pump and a Na–K-ATPase.162,163
Furthermore, the endosome acidification profile can be
modified by cyclic AMP.164 The outcome of this experiment
suggested that in fact molecular species involved in the
generation of a specific endosomal milieu can be detected
and observed by SERS.24
Fig. 8 SERS spectrum collected from a spot in a J774 macrophage
cell after incubation with gold nanoparticles, excitation wavelength
o3 � 105 W cm�2 at 785 nm, collection time 1 s. The spectrum
represents the SERS spectrum of AMP and/or ATP. Band assign-
ments based on ref. 161 are indicated. Abbreviations: cps, counts
per second; n, stretching mode; o, wagging mode; d, bending mode;
Rib, ribose; Pyr, pyrimidine; Im, imidazol (adapted with permission
from Kneipp et al.24). Inset: photomicrograph of J774 macrophage
cells after incubation with gold nanoparticles.
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4.2 Endosomal constitution in the presence of the
nanomaterials: insights from SERS
SERS is an ideal tool to study endosomal composition because
the dimensions of the endosomes fit the dimensions of nano-
particles and their aggregates. In such an experiment, noble
metal nanoparticles that show plasmonic properties have to
be employed, since the endocytosed material itself serves as
the SERS-active nanostructure. Acting as a nanosensor, it
transmits molecular information from its immediate vicinity,
whose dimensions are determined by the local optical field that
is generated due to excitation of the localized surface plasmons
in the metal. SERS can probe the endosomal environment very
locally. In accord with ultrastructural studies using electron
microscopy, confirming accumulation of most endocytosed
gold and silver nanoparticles in endosomes (see also
Fig. 4A–C and Section 3.1), most work on SERS inside cells
provides information on the composition of endosomal
structures.24,102,113,114,116,165–168
It should be noted that the SERS enhancement can differ
drastically between individual nanoparticles and nanoaggregates
that appear as a consequence of vesicular fusion inside the cells
(see also Section 3.3). In systems where individual nanoparticles
prevail, probing the endosomal environment with silver nano-
particles rather than gold nanoparticles could be beneficial: even
though the enhancement of silver nanoparticle aggregates and
gold nanoparticle aggregates is very similar (both can reach up to
1014), the enhancement of individual silver nanoparticles
(106–107) is much higher than that of gold nanospheres
(103–104) at their respective plasmon resonances.145 On the other
hand, silver nanoparticles may be toxic to the cells at high
concentration, and may thereby affect endosomal composition.
Therefore, care should be taken when selecting plasmonic
nanomaterial for probing of early endosomal stages.
SERS spectra from cellular molecules were reported in
several different cell types, using either only gold nano-
particles,24,102,165,167,169 or gold or silver nanoparticles carrying
reporter molecules in a concentration that permitted the detec-
tion of intrinsic SERS spectra from the cellular biochemistry in
addition to the reporter signature.113,114,116,120,168
An assignment table for SERS spectra from endosomes is a
smorgasbord of bands, representing all types of molecules
present in the vesicles (for examples please see the works
cited above).
The detection of typical adenosine monophosphate signatures
in endosomes of J774 macrophages discussed above (Fig. 8)
illustrates though that important molecular species may be
identified in the spectra. Sorting of the spectral information from
SERS experiments in complex molecular mixtures is one of the
main tasks that will need to be accomplished in the current efforts
to establish intracellular SERS as a tool in biophysics and
nanotoxicology. Using some sort of statistical analysis can help
to pre-sort spectral signatures.
Coming back to an example discussed above in another
context, Fig. 7A–C displays typical SERS spectra for three
different time points after a period of endocytotic uptake of
nanoparticles into IRPT epithelial cells from a cell culture.
Without attempting an interpretation, the differences between
the spectral signatures indicate that the molecular composition
of the endosomal vicinity of the nanoparticles changes over
time. To compare potential qualitative alterations, full data
sets of B500–800 spectra were analyzed per time point. The
number of bands in the spectra that display 90–100% of the
maximum signal level of each data set (time point) totals 2 to 8
bands at 30 min. A significant increase in the number of
spectral bands is found at t = 120 min. At this time point,
the portion of SERS spectra exhibiting 90–100% of the signal
level contains 13–19 characteristic bands, resulting from an
abundance of different spectral contributions that were not
observed for the other time points. From the comparison of the
120 min and the 180 min spectra (Fig. 7B and C, respectively),
we see that there occurs again a decrease in the number of
spectral features (3 to 6 bands in the SERS spectra of the
90–100% highest signal level). This or similar information
could be used for imaging and correlated with complementary
information, e.g., from electron microscopy.
Other possible approaches could be the decomposition of
signals by various means. In our very first work on SERS
hybrid probes, we were able to subtract characteristic spectra
of the reporter molecule indocyanine green from the hybrid
spectra, yielding spectra with the endosomal contributions.113
Recently, we separated contributions from two different reporter
molecules and those of different intrinsic cellular signatures using
principal components analysis (PCA) and used cluster methods
for imaging (see also Fig. 5I and J).120 This result indicates that
fast multivariate evaluation of whole sets of SERS spectra is
feasible, also for varying signal-to-noise ratio.120 Other examples
of multivariate decomposition of SERS data include the applica-
tion of singular value decomposition of SERS spectra from
mixtures of reaction products170 and use of cluster analysis on
intrinsic SERS signals of biological cells in extracts of pollen
samples.171 Multivariate methods, as shown for hybrid SERS
probes carrying reporter signatures and spectral contributions
from intrinsic molecules, will also enable more efficient imaging
of endosomal structures in the future.
The lipid composition in the environment of endocytosed
nanoparticles has been a subject of both SERS as well as
normal Raman studies. Considering that the lipids of the
cellular membrane are key components in the endocytosis,
and lipid deposits are associated with material uptake and
degradation in phagocytes (see Section 4.1). Raman spectro-
scopic evidence of lipids in the proximity of endocytosed
material shall be discussed here briefly as well. SERS spectra
of lipids were found for SERS hybrid probes consisting of gold
nanoparticles and crystal violet as reporter dye in some
positions of 3T3 fibroblast cells after an incubation of the
nanoprobes for two hours.114 Comparing these results with
earlier studies of the same types of nanoparticles that included
a TEM study, efficient interaction of dimers and trimers of
nanoparticles24 with the endosomal membranes must take
place. Interestingly, intracellular SERS can also be used
to detect the production of lipids shortly after the onset
of adipogenesis in endosomes of human adipose-derived
stem cells.169 In this context, also the ability to observe the
lipid SERS signals in the intestinal granules of C. elegans50
discussed earlier should be mentioned one more time (compare
Fig. 2C). Although not further explored in this study, apart
from imaging, molecular investigation of lipid bilayers could
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provide more detailed insight into the composition of the lipid
granules.
The observation of lipids in the proximity of the endocytosed
nanomaterial that was made in SERS experiments using plasmonic
nanoparticles are corroborated by normal Raman experiments
with cells that endocytosed other nanomaterials: Chernenko
and co-workers observed the co-localization of poly-caprolactone
nanoparticles and vesicles of high lipid content in HeLa cells.13
PCA identified the local environment of polystyrene nano-
particles in A549 epithelial cells as rich in lipidic signatures
which were associated with localization of the nanoparticles in
the endoplasmic reticulum.172 In the work of Romero et al.
with oxidized carbon nanotubes, spectra of cellular lipid were
found together with those characteristic of the nanotubes in
HepG2 cells.173 In general, normal Raman microspectroscopy
is a powerful tool to study lipid composition and structure
in cells, as shown in several other examples e.g., ref. 174.
Tip-enhanced Raman scattering (TERS) before endosome
formation could provide another means for probing cellular
membrane biochemistry by plasmon-enhanced Raman scattering.
In this way membrane structure could be probed at positions that
may end up as endosomal membranes as a consequence of
interaction with nanomaterials. After proofs-of-principle that the
method can be used to study membrane composition175,176 and
that TERS spectra can be acquired in liquids,177 such experiments
have come within reach.
4.3 Information on endosomal pH from a Raman experiment
A parameter that varies drastically over time in the endosomes
containing nanoparticles is the pH value.178 In many cell types,
significant acidification compared to earlier endosomal stages takes
place in the lysosome. There, to ensure e.g., proper enzymatic
function, pH can be well below 5, and even lower (o4).179
The SERS signatures of particular reporter molecules as
part of SERS probes were found to be pH-dependent. SERS
spectra of 4-mercaptobenzoic acid (pMBA) on silver and gold
electrodes and the dependence of the spectra on the pH value
have been reported and discussed in terms of adsorption
geometry on the metal and on the state of dissociation of
the carboxyl group as a consequence of surrounding pH.180
The pH dependent SERS spectra of pMBA adsorbed on gold
nanoshells bound to a silicon substrate were used to create a
pH meter working over the range of 5.8 to 7.6 pH units.181
Using 4-mercaptopyridine as a reporter, the pH range detected
on the nanoshells can be extended from 3 to 7.182 Similar
experiments demonstrated that hollow gold nanospheres with
pMBA were responsive over a pH range of 3.5 to 9.183
SERS studies on silver nanoparticle clusters functionalized
with pMBA showed that the spectrum is sensitive to pH
changes in the surrounding solution in the range of 6–8.122
The authors concluded from a SERS spectrum measured from
these silver particles incorporated into Chinese hamster ovary
cells that the pH in the environment of the particles was below
6, an observation consistent with the particles being located
inside lysosomes.122 Studies with pMBA on gold nanospheres
demonstrated that pH in the endosomal system varied between
6.8 and 5.4 in endosomes of different ages.104 Meanwhile,
several experiments determining pH using reporter functionalized
nanostructures in cells have been reported, including pMBA
on gold nanoshells,184 pMBA fiber optic nanoprobes for intra-
cellular measurements,185 and also aminothiophenol on silver
nanoparticles186 and on gold nanorods.187
The application of a pMBA-based SERS nanosensor for pH
imaging of single live cells is illustrated in Fig. 9. In these
experiments the pH nanosensor consists of citrate-stabilized
gold nanoparticles covered with a monolayer of pMBA. The
SERS spectra in Fig. 9A show the characteristic pMBA
signature at different pH values ranging from pH 3.8 to 10.
The Raman bands at 849 cm�1 and 1424 cm�1, which correspond
to vibrations involving the carboxyl group, are sensitive to changes
in the pH value.180 The deprotonation of pMBA at higher pH
values leads to an increase of the signal intensity of the carboxyl
stretching vibrations (Fig. 9A). For calibration of the pMBA
nanosensor, the signal ratio of the (C–C)ring stretching vibration
at 1076 cm�1, which is not influenced by changes in the pH value,
and the COO� stretching vibration at 1424 cm�1 are used.
The mobile and biocompatible pH nanosensor allows us to
monitor the distribution of the pH value in single cells at
subendosomal resolution. In the results displayed in Fig. 9C,
3T3 mouse fibroblast cells were exposed to pMBA-coated gold
nanoparticles for 5 hours. In the Raman microspectroscopic
cell experiments, spectra were acquired by raster scanning over
a single live cell in steps of 2 mm. The SERS spectra measured
in the cellular environment of the pH nanosensor (Fig. 9B)
exhibit different pMBA signatures, which indicate different pH
values inside the cell.
The Raman chemical maps of individual fibroblast cells in
Fig. 9C visualize the intracellular distribution of the pH value.
Obviously, after a few hours of incubation, the incorporated
gold nanoparticles have accumulated inside the cell. Depending
on the localization of the pH nanosensor, the intraorganelle
pH value differs within the cells. Close to the cellular
membrane the pH value is higher than in the perinuclear
region. This is attributed to the maturation of the vesicles
containing the pH nanosensor. In the course of cellular
processing the pH value becomes more acidic from pH 7.4
in the endocytic vesicle formed during particle uptake to
pH 4.5–5 in the lysosomes. The latter often accumulate near
the cell nucleus. Since particles are continuously taken up
during the incubation time of 5 hours, early endosomes and
lysosomes coexist in the same cell. Ultrastructural studies of
this cell line (see Fig. 4) prove that at this stage, many particles
are enclosed in late endosomes and lysosomes near the cell
nucleus.
The distribution of sampled spots of different pH in the
cells, as displayed in Fig. 9C, can also be analyzed statistically,
and can be used to follow the dynamics of the pH change in a
population of endosomes.105
We also demonstrated the application of a pMBA SERS
sensor using two-photon excited Raman scattering (surface-
enhanced hyper Raman scattering, SEHRS).104 SEHRS spectra
of pMBA show the same bands as SERS spectra, but the
relative signal strengths are changed. These differences in
the SEHRS signature of pMBA are useful for creating a
pH sensor that allows measurements in a more extended range,
from pH 2 to pH 8.104 This could be of interest for measure-
ments in subcellular compartments of unknown or extreme pH,
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e.g., very acidic lysosomes, and pathologies associated with
potentially defective acidification.188–190
4.4 Raman information from the nucleus
The nuclei of animal cells represent the largest sub-cellular
compartments and can be identified in bright field images of
unstained cells. Therefore, they can be studied easily using a
Raman microscope, and have been investigated frequently
since the early days of single cell Raman spectroscopy. Raman
spectra from intact nuclei can reveal information about the
in vivo secondary structure of the DNA and about its inter-
action with proteins.21,157
Since the DNA structure and association with proteins
change in the course of the cell cycle, the DNA and protein
spectral signatures from the nuclei have provided useful mar-
kers for the discrimination between different cell types and for
cancer cell detection in the development of Raman-based tumor
diagnostics, e.g., for the identification of neoplastic cells.76,191
The nucleus of a cell can be imaged either by mapping the
intensity of DNA-specific Raman bands, or by hyperspectral
imaging, the latter taking into account wider spectral regions or
the Raman spectral fingerprint as a whole.22,192,193 Imaging
studies using the resonant Raman signals of drugs have revealed
the specific interaction of externally applied molecules with the
nuclear ultrastructure. For example, teraphthal, a transition
metal complex that could serve as a component in a cytostatic
drug, was monitored in living A549 lung epithelial cells.194 RR
imaging revealed that the teraphthal binds very weakly to
DNA and RNA, but it readily forms complexes with the
histone proteins in the nucleus.194 In another, more recent
study, a CO-releasing metal–carbonyl complex was imaged after
its penetration of an HT29 colon cancer cell, and found to
localize mainly in the nuclear membrane and the nucleolus.195
Cytotoxicity, potentially induced when nanoparticles enter
a cell, can induce severe molecular changes in the nucleus. In
the example of silver nanoparticles, concentration dependent
cytotoxicity is observed,152,155 expressing as mitochondrial
and DNA damage or early apoptosis. Resonance Raman
data can report on the mitochondrial integrity. Recently,
Okada et al. observed dynamic changes in the cytochrome
c distribution inside cells after inducing apoptosis.23 Their
data using resonant Raman excitation of cytochrome c suggest
that the distribution of this protein changes because the
molecule is released when mitochondrial integrity is lost in
the apoptotic process. The work also showed that the redox
state of cytochrome c did not change during its release from
the mitochondria.23
DNA damage in the cytotoxic process induced by silver
nanoparticles was shown to be induced by reactive oxygen
species (ROS).196 A similar, ROS-mediated toxicological response
was found for SWCNTs.61,197
Fig. 9 Investigation of the intraendosomal pH value. (A) SERS spectra of para-mercaptobenzoic acid (pMBA) coated gold nanoparticles at different
pH values. (B, C) The pH nanosensor is used to monitor the pH value inside live cells. Mouse fibroblast cells were incubated with pMBA gold
nanoparticles (pMBA concentration 1 mM) for 5 hours. (B) Selected SERS spectra of the pH nanosensor in vitro. (C) Raman chemical maps of fibroblast
cells visualize the local distribution of the intracellular pH value (intensity ratio of the pMBA Raman bands at 1076 cm�1 to 1424 cm�1). An excitation
wavelength of 785 nm was applied in all experiments with a laser intensity on the sample of B8 � 104 W cm�2 and an acquisition time of 1 s.
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Multi-walled carbon nanotubes were found to exert moderate
toxicity on HepG2 (liver hepatocellular carcinoma) cells. Molecu-
lar information of cellular constituents was retrieved in the
presence of the strong Raman contributions of lipid-functionalized
multi-walled carbon nanotubes.173 By using the high-frequency
region of the Raman spectra of cells containing the nanotubes,
the nucleus, cytoplasm, and lipid bodies were identified by the
intensity ratio of bands assigned to C–H stretching vibrations
of CH2 and CH3 groups. The localization of the characteristic
nucleus spectrum did not match that of the oxidized carbon
nanotubes, indicating that the material was not located in
the nucleus.173
The degree of DNA condensation varies strongly over the
course of the cell cycle, affecting the Raman spectra of the
nucleus. Notingher et al. have reported cell cycle phase
dependent Raman spectra, with main spectral differences
between the different stages occurring at a few characteristic
frequencies (782, 788, and 1095 cm�1).198 Later, Raman
microscopic images of the distribution of condensed chromatin
in the nuclei, using intensities of DNA and protein signals, could
be used to map cells in different phases of mitosis.199 Raman
spectra of human osteosarcoma cells that were synchronized in
G0/G1, S, and G2/M phases of the cell cycle were analyzed
with multivariate statistics, and changes in the cell spectra
were analyzed as a function of cell cycle phase, with principal
component analysis suggesting a decrease in the relative lipid
contribution in the course from G0/G1 to G2/M.200 Also spectral
contributions of the RNA vary in different cell cycle phases.201
Epigenetic changes, displaying as chromatin re-organization,
were also observed recently in Raman tweezer experiments with
Jurkat cells.202 A closer observation of the cell cycle is very
helpful when delineating the toxicity of a material: in the case of
silver nanoparticles, a possible toxic action may involve the
disruption of the respiratory chain in the mitochondria. The
resulting production of ROS interrupts generation of adenosine
triphosphate, leading to DNA damage.152 In addition, direct
interaction of the silver nanoparticles with the DNA is thought to
arrest the cell in the G2/M phase.152
Several groups have studied the chemical changes that occur
in the nuclei upon cell death, which are far more drastic than
those found for different stages in the cell cycle. The Raman
spectra of dead A549 lung epithelial cells indicated the break-
down of both phosphodiester bonds and DNA bases. In
particular, the intensity of a characteristic P–O–P band was
found to be extremely reduced.198,203 The fate of the nucleus and
its constituents during the apoptotic process can be sketched
using Raman data. In the earlier stage, the nucleus shrinks due to
the stress, as was shown in Raman imaging experiments by
Krafft et al.204 Later, the nucleus becomes fragmented, nucleo-
tide condensation and protein distribution in nuclear fragments
were mapped in apoptotic HeLa cells.205 In a very late apoptotic
stage, after fragmentation of the nucleus, when membrane
blebbing occurs at the surface of the cells, the nucleic acids show
up in the blebs.204 The apoptotic process was also investigated using
optical tweezer Raman spectroscopy.206 More recent imaging
of the time course of apoptosis indicates a high accumulation
of membrane phospholipids and highly unsaturated non-
membrane lipids in apoptotic cells, in addition to the DNA
condensation.207 Raman imaging is particularly useful to study
cell death, since the structural information that is obtained about
the nuclear components can be combined with the morphological
information on cellular structure. One example is the apoptotic
bodies, which are characteristic of the apoptotic process, but
absent in the case of necrosis. In necrotic cells, Raman spectro-
scopy indicated also a decrease in the amount of RNA, similar to
the observation in apoptosis, but a decrease in lipids.208
Raman spectroscopy on single cells, acting as sensors, has
become a tool for the detection of drug-induced cellular
changes, specifically drug-induced apoptosis.209,210 Recently, a
strategy of using Raman spectroscopy of single, isolated nuclei
was proposed for rapid and sensitive detection of cellular
changes in response to chemotherapeutic agents.210 These
results illustrate that Raman spectroscopy may as well become
a sensitive routine tool to assess nanotoxicity.
4.5 Nanoparticles in the nucleus
The transport of molecules between the cytoplasm and the
nucleus is known to occur through the nuclear pore complex
(NPC) and is mediated by multiple families of soluble trans-
port factors.211 All the transport receptors share the ability to
translocate across the NPC, probably through specific inter-
actions with components of the nuclear pore. Molecules larger
than 40 kDa must be transported by nucleo-cytoplasmic
shuttling receptors, recognizing their cargo in the cytoplasm
and then uploading it through the NPC to target the nucleus,
by signal- and energy-dependent mechanisms.212 The best
characterized nuclear import pathway involves cargo proteins,
comprising a basic amino acid-rich nuclear localization signal
(NLS).213–215 In order to enter the nucleus, also most nano-
particles will have to pass the NPC.
Several studies have succeeded in targeting the cellular
nucleus with gold nanoparticles, using different strategies.216–218
As the pioneering example, Feldherr and co-workers had
proven the existence and size exclusion of the NPC using
functionalized gold nanoparticles with oocyte nuclei.219 Later,
they demonstrated that the upper limit for nuclear import in
3T3 fibroblast cells is approximately 25 nm.220 A peptide
derived from the HIV Tat transactivator protein has been found
to act as an efficient molecule to incorporate gold NPs into
human fibroblasts and to translocate them into the nucleus.218
Oyelere and co-workers reported nuclear targeting with gold
nanorods carrying thiolated NLS peptide based on light
scattering in dark field microscopy.106 They also conducted
Raman experiments and found SERS spectral contributions
from the functional molecules on the nanorods.106 A recent
study using so-called cell-penetrating peptides reported that
the ultimate intracellular destination determined by the display of
the cell-penetrating peptide and further by the diameter of the
nanoparticles.90 The smallest 2.4 nm nanoparticles were found to
localize in the nucleus, while intermediate 5.5 and 8.2 nm
particles were partially delivered into the cytoplasm, showing a
perinuclear fate.90 Also silver nanoparticles have been targeted to
the nucleus using NLS peptides, and a cytotoxic response has
been monitored.221
In contrast, nuclear localization only rarely occurs in the
absence of localization signals. Ultrastructural studies using
quantitative analysis of transmission electron micrographs
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have addressed the cellular uptake and intracellular trafficking of
15 nm gold nanoparticles, either plain or coated with PEG, exposed
to A549 lung epithelial cells. The data revealed a significant,
nonrandom intracellular distribution for both nanoparticle
types. No particles are observed in the nucleus, mitochondria,
endoplasmic reticulum, or Golgi.89 A study on uptake of silver
nanoparticles in human mesenchymal stem cells222 with light
microscopy reports similar findings: typically, silver agglomerates
were located in the perinuclear region, as determined by light
microscopy. Specific staining of cellular structures using fluorescent
probes showed that the silver nanoparticles occurred mainly within
endo-lysosomal structures, not in the cell nucleus, endoplasmic
reticulum or Golgi complex. In inhibition experiments, selectively
blocking the process of clathrin-dependent endocytosis indicated
that the nanoparticles were taken up primarily by clathrin-
dependent endocytosis and macropinocytosis.222
A few studies have reported SERS experiments with gold and
silver nanoparticles carrying nuclear targeting sequences in cul-
tured cells.106,168,223 Silver nanoparticles co-functionalized with
the TAT peptide showed greatly enhanced cellular uptake,
however without clear evidence for being taken up into the
nucleus.168 Dark field surface plasmon resonance scattering
images were used to demonstrate that NLS functionalized gold
nanorods are located in both the cytoplasm and nucleus of two
cell lines, an epithelial cell line and an oral cancer cell line.106 The
group reported SERS spectral contributions from nucleic acid
and protein components, which they assigned to the molecular
constituents of the nucleus.106 So far, ultrastructural evidence of
the nucleus being the exclusive origin of the nucleic acid and
protein signals in the SERS data has been lacking, and providing
such evidence will remain a great challenge. The probe volume
in a typical light microscope (usually on the order of tens
of femtoliters) employed in a Raman study always includes
cytoplasmic, perinuclear regions, where endocytotic vesicles with
extranuclear nanoparticles will accumulate. Due to the high
density of endosomes in this region, a very small portion of
cytoplasmic volume will be sufficient to generate high SERS
signals from the perinuclear region. As a second challenge, many
signals in a SERS spectrum that have been attributed to nucleic
acids and nuclear proteins were also found in experiments
where nuclear localization can be excluded based on the absence
of nuclear localization signals and/or large sizes of nano-
particles,116,165 and confirmation of a lack of nuclear localization
by electron microscopy.24 Especially in the late stage endolyso-
somes, nucleotides, DNA bases, and protein components can be
found in the proximity of the gold or silver nanoparticles. As
another aspect, nuclear integrity should be monitored carefully,
especially in experimental settings that could provoke pre-
apoptotic scenarios, such as incubation with silver nanoparticles,
or heating effects due to high plasmon absorption.224 The high
density in perinuclear late endosomes also requires very sophis-
ticated light microscopic approaches, or ideally high-resolution
ultrastructural microscopy experiments to ensure discrimination
between intranuclear and extranuclear nanoparticles.
5 Conclusions
To conclude, we have reviewed here work that concerns Raman
microspectroscopic studies of biological cells and tissues that
might be relevant for further investigations on the interaction
of nanomaterials with biological systems. The work discussed
here illustrates that a major strength of Raman microscopy
lies in the ability to map cellular chemistry, including the
possibility to monitor changes in living systems over time. In
principle, both, the nanomaterial and the biological structure
can be characterized in such a Raman experiment.
The Raman information can be obtained at different scales,
on whole organisms and tissues at the macroscopic scale, at
the microscopic, cellular level, and at the level of the inter-
action of biomolecules and cellular architecture with the
nanomaterials. Regarding the influence of the nanomaterials,
these different scales result in different levels of understanding.
A major challenge in further research will be the connection
between the different scales in different Raman experiments.
To a certain extent, this can be envisioned by designing
experiments which enable the observation of processes at both
the micro- and the nanoscale, when the structure of certain
molecules can be probed selectively, e.g., in some resonant
Raman microscopic experiments, or in SERS probing of
molecules adsorbing selectively at the nanoparticle surface.
Similarly, improved imaging technologies such as SORS
and hybrid Raman/fluorescence microscopies will need to be
employed to understand interaction of individual cells at the
tissue level, enabling the connection of cell physiological with
systemic, that is, microscopic with macroscopic information.
For the majority of molecular parameters that have to be
elucidated though, matching the information from different
Raman experiments will be the crucial task. An important
point here is the combination of experiments using relevant
models, so that macro- with microscale, and microscale with
nanoscale information can be connected. Specifically, suitable
cellular in vitro models that could mimic the situation in a
specific tissue should be used for Raman microscopy studies
on cells. This approach is obvious and becoming common
practice in toxicology research as well. A more complex task is
the choice of model at the (nanoscale) level of structure
investigations that are relevant for the situation of the inter-
action in the cell or tissue, including the nanomaterial. To this
end, more input will be needed from other biophysics and
molecular biology research. In order to successfully connect
knowledge on molecular structure and dynamics of cellular
molecules with that on biochemical and physiological
responses of cells or even of tissues, results from Raman
spectroscopy have to be combined with those of other inves-
tigations. For example, ultrastructural microscopy will reveal
complementary information on the interaction of nano-
particles with the cellular architecture, and cytotoxicology
investigations may provide cell physiological parameters
that could be combined with Raman information on the
biochemical composition of cellular organelles.
Acknowledgements
We would like to thank Betty Jobs for help with sorting
the literature. This work was supported in part by ERC
Grant 259432 (MULTIBIOPHOT) and funding from BAM
Innovationsoffensive (NANOTOX 1).
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