Using the Express Data Repository

Duke Microarray Facility2008, March2008, March

Manage Projects: Add Resource your data will be automatically uploadedinto your project ID if data was generated in the Duke Microarray Facility. If you choose to add more relevant files, select Add Resource.choose to add more relevant files, select Add Resource.

Select Add Resource

Manage Projects: Add Resource – Individual file

Select individual file to upload from desktopAutomatically classifies file type, if not select file type

Give description of file

Select Public if wanting file to be accessed via web site or by other accounts

Manage Projects: Add Resource – Batch upload

Select Directory where the data resides, i.e.home directory. Inside the directory a folder labeledexpress must exist and inside that folder,a folder labeledwith the project ID must exist (i.e 1383). Inside the project ID folderis the files that need to be uploaded.

Type in descriptionType in description, can be filled in for all

Specify file type, typically automatically recognized Specify if the file should be

publically accessible, need tobe public if posted on a web site.

Manage Projects: Add Resource – Batch upload

Once the data has been uploaded you will see this page

Then this page… and then you will beasked if you want to download the dataas a winzip file.

Manage Projects: Manage Files allows you to download data, copy it to another folder, and make it available to others to view if needed

C fil t diff t j t f ldCan copy files to a different project folder

Manage Projects: Manage Files allows you to download data, copy it to another folder, and make it available to others to view if neededpy

See next slide

Manage Projects: Manage FilesManage Files

Description of each function

Manage Projects: Manage Stashes allows you to download multiple files at once

Select Stash It

Manage Projects: Manage Stashes

Select files that you want to download as a stash (aka winzip file)

Select how long the stash should be saved in your folder

Manage Projects: Manage Stashes

Files are stored and now you have the option to download it as a winzip file

Manage Publications: Create a web site for posting your microarray data and other relevant information

Select Create Publication Entry

Select Manage Publications

Manage Publications: Create a web site for posting your microarray data and other relevant information

Manage Publications: Provide information about your publication.

Provide Abstractof paper and then clicksubmit to create web site

Provide information if already published, or if not leave blank and return to site whenif not leave blank and return to site when paper is published.

Manage Publications: Can edit information on page and upload supplemental information

Manage Publications:Representation of a web site

Project Summaries: allows you to view managers of projects that have been made publicly available

Select Project Summaries

Project Search allows one to search the projects in the ExpressRepository based on the Annotation information

Read Project AnnotationSearch Page

Select Project Search