Date post: | 27-Jan-2015 |
Category: |
Science |
Upload: | keiichiro-ono |
View: | 120 times |
Download: | 4 times |
Keiichiro Ono ([email protected])University of California, San Diego Department of Medicine
What is NeXO Web?
NeXO WebAn Integrated Ontology Visualization Application for Modern Web Platforms
Technologies
Gene Ontology Visualizations
Search & Term EnrichmentAnalysis Window
Ontology Tree (DAG) View
Raw Interaction View
Term Details
A gene ontology inferred from molecular networks. Janusz Dutkowski, Michael Kramer, Michal A Surma, Rama Balakrishnan, J Michael Cherry, Nevan J Krogan & Trey Ideker. Nature Biotechnology 31, 38–45 (2013).
NeXO (Network eXtracted Ontology) is a data-driven gene ontology inferred directly from ‘omics data. The NeXO Web application is designed to visualize the NeXO data sets and existing ontologies, such as GO, utilizing modern web technologies. - Provides a new way to visualize ontology data sets with modern web technologies - Integrate multi-omics data into a HTML5-based Single Page Application (SPA) - Open for future expansion
Theoritical BackgroundNeXO Web: the NeXO ontology database and visualization platform. Dut-kowski J, Ono K, Kramer M, Yu M, Pratt D, Demchak B, Ideker T. Nucleic Acids Res. 2014 Jan;42 (Database issue)
Thechnical Background
nexontology.org
sigma.jsClient-Side Server-Side
Cytoscape.js