+ All Categories

Home > Documents > Next Generation Sequencing - Visualization -

Next Generation Sequencing - Visualization -

Date post:	05-Jan-2016
Category:	Documents
Upload:	huey
View:	45 times
Download:	6 times

Download Report this document

Share this document with a friend

Description:

Next Generation Sequencing - Visualization -. Arif Hossain Kyung Min Su. Content. Visualization Issues NGSView Tablet. Visualization Issues. Huge Data Various Format Rendering and Navigation Extensibility. NGSView. Berkeley DB engine Front end converter XML format - PowerPoint PPT Presentation

Embed Size (px):

12

Next Generation Sequencing - Visualization - Arif Hossain Kyung Min Su

Transcript

Page 1: Next Generation Sequencing - Visualization -

Next Generation Sequencing - Visualization -

Arif Hossain

Kyung Min Su

Page 2: Next Generation Sequencing - Visualization -

Content

Visualization Issues

NGSView

Tablet

Page 3: Next Generation Sequencing - Visualization -

Visualization Issues

Huge Data

Various Format

Rendering and Navigation

Extensibility

Page 4: Next Generation Sequencing - Visualization -

NGSView

Berkeley DB engine

Front end converter XML format

Open and Documented API http://ngsview.sourceforge.net

Page 5: Next Generation Sequencing - Visualization -

NGSView

Page 6: Next Generation Sequencing - Visualization -

NGSView

Page 7: Next Generation Sequencing - Visualization -

NGSView

Page 8: Next Generation Sequencing - Visualization -

Tablet High-performance visualization and data navigation. Display of reads in both packed and stacked formats. Paired end visualization support. File format support for ACE, AFG, MAQ, SOAP2, SAM

and BAM. Search and locate reads by name across entire data

sets. Support for Windows, Apple Mac OS X, Linux and

Solaris, in 32 and 64-bit.

Page 9: Next Generation Sequencing - Visualization -

Tablet

Page 10: Next Generation Sequencing - Visualization -

Tablet

Page 11: Next Generation Sequencing - Visualization -

Tablet

Page 12: Next Generation Sequencing - Visualization -

Question?

NGSView http://ngsview.sourceforge.net

Tablet http://bioinf.scri.ac.uk/tablet

Recommended

Second-Generation Sequencing Introduction to second-generation

Next Generation Sequencing Technologiessssykim/teaching/f13/slides/NextGenSeq.pdf · Next Generation Sequencing ... Sequencing • Polymerase errors ... Mardis, ER; Ann Rev Genom

Next-Generation Sequencing Data Analysis: A Practical ...Next-Generation Sequencing Data Analysis: A Practical Introduction Quality Control, Read Mapping, Visualization and DNA Variant

CSU IDRC Next Generation Sequencing Core Genomic Sequencing Services

Next Generation Sequencing Pipeline Development and Data Analysis · 2013-08-22 · Sequencing Technologies – the Next Generation, Micahel L. Metzkerh Next Generation Sequencing

Next-Generation Sequencing Data Analysis · Next-Generation Sequencing Data Analysis ... Next-Generation Sequencing (NGS) has become one of the most important tools in the ﬁeld

3rd Generation Sequencing

Sequencing: The Next Generation

Next-generation sequencing

Next Generation Sequencing:Next Generation Sequencing ... · PDF fileNext Generation Sequencing:Next Generation Sequencing: Improved Library Quantification with Ail tT h l iAgilent

Visualization of Next Generation Sequencing Data using the Integrative ...bpg.utoledo.edu/~afedorov/ABPG2017/Lecture6/IGV-Roscoff-Septembre... · Integrative Genomics Viewer (IGV)

Next Generation Sequencing Presentation

Next-Generation Sequencing CHARLES CHIU AND STEVE MILLER 6€¦ · Next-Generation Sequencing CHARLES CHIU AND STEVE MILLER 6 Next-generation sequencing (NGS), otherwise known as

Cameras for Microscopy and Next-Generation Sequencing 2019 … · 2019-11-05 · Next Generation Sequencing Market & Technology Report 2019 Sample. 2 ... Next generation sequencing

Introduction to second- generation sequencing · Second generation sequencing •Aka: high-throughput sequencing, next generation sequencing (NGS). •Able to sequence large amount

Intro: High-throughput Sequencing - i-med.ac.at · Third generation sequencing The Technology Next generation sequencing, capable of sequencing DNA/RNA molecules directly, without

Next generation sequencing gene panels for targeted ... · next generation sequencing gene panels for ... next generation sequencing gene panels for targeted ... (wiv – isp), eric

Next Generation Sequencing Update