Date post: | 01-Jan-2016 |
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Olduvai /Accordion Drawing
http://olduvai.sf.net
Tamara Munzner, James Slack, Kristian Hildebrand
University of British Columbia
TreeJuxtaposer
Visualization of phylogenetic trees
Interactive comparison of several trees with over one million nodes
Focus + Context Guaranteed visibility User-defined groups Searching
Focus+Context
Display large datasets using scalable drawing techniques
Stretch interesting details, smoosh surroundings
Interaction uses a rubber sheet with tacked down borders approach
Never push nodes off-screen Never lose track of marked groups
of interest
User-Defined Groups
A group is a forest of color identified nodes
Select nodes or subtrees for group inclusion
Guranteed visibility of groups Marked groups drawn
even when small
Text based search, reduce search results as you type Search for nodes of interest with mouse
Searching
Tree Comparison
Using our Best Corresponding Node (BCN) algorithm: Mouse-over highlighting Simultaneous tree
navigation Group selection across
trees
SequenceJuxtaposer Navigation and comparison of biomolecular sequences Aligned sequences shown horizontally Same rubber sheet interaction metaphor as TreeJuxtaposer Browse large collections of sequences of 30 million nodes Differences in aligned columns are highlighted Motif searching Visualize annotations
Differences
Difference threshold assists in determining aligned nucleotides, shows possible strong phylogenetic signals
Searching
Motif searching Matching bases are marked as landmarks and are
guaranteed to be visible
Annotations
Include annotations to understand sequences
Webpage
Olduvai online: http://olduvai.sf.net