+ All Categories
Home > Documents > One-Step Enrichment Broth for the Simultaneous Recovery of DFI … · 2019-07-29 · •Z ]...

One-Step Enrichment Broth for the Simultaneous Recovery of DFI … · 2019-07-29 · •Z ]...

Date post: 15-Jul-2020
Category:
Upload: others
View: 0 times
Download: 0 times
Share this document with a friend
1
Ratio 1:100 Ratio 100:1 0 2 4 6 8 10 Log 10 CFU/mL Ratio 1:1 0 2 4 6 8 10 Log 10 CFU/mL 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 0.0 0.1 0.2 0.3 0.4 0.5 0.6 Time (hours) OD 600nm Afia Boumail 1 , Anne Helmer 1 , Marie-Goreth Nicizanye 1 , Anna Yattara 1 , Michael Giuffre 2 and Sergiy Olishevskyy 1 1 FoodChek Laboratories Inc., Ste-Julie, Quebec, Canada 2 FoodChek Systems Inc., Calgary, Alberta, Canada One-Step Enrichment Broth for the Simultaneous Recovery of Salmonella enterica and Cronobacter sakazakii in Powdered Infant Formula Salmonella enterica and Cronobacter sakazakii are categorized as dangerous contaminants of powdered infant formula that represent a serious health risk for newborn infants. Conventional culture methods are time consuming and not user-friendly for detecting both pathogens. Therefore, the development and implantation of rapid and cost- effective methods allowing for the simultaneous detection of these pathogens remain important. The objective of this study was to develop a novel enrichment broth, Actero Simultaneous Recovery Broth (ASRB), that allows the one-step simultaneous recovery of S. enterica and C. sakazakii followed by both RT-PCR and culture detection. Introduction Conclusions In vitro Simultaneous Culture Studies Method Principle Infant Formula Samples Studies Fig. 1. Growth of Salmonella Agona and Cronobacter sakazakii in Actero Simultaneous Recovery Broth One Step Enrichment Sampling and Dilution DNA Isolation DNA Amplification Result Analysis 18H As short as Time-to-Result RT-PCR Detection MAX 40H Time-to-Result One Step Enrichment Sampling Plating Incubation Result Analysis Culture Detection Table 1. Growth Kinetics Data Strain Kinetics Parameter ASRB S. Agona Lag Phase Duration 5.912 ± 0.469 Growth Rate 0.195 ± 0.002 C. sakazakii Lag Phase Duration 4.985 ± 0.609 Growth Rate 0.298 ± 0.013 Notes : N Number of experiments. Culture Conditions: Initial Inoculum 20 CFU/well Medium Volume 200 μL Temperature 35°C Time 16 hours A total of 170 artificially contaminated infant formula samples were examined to evaluate performance of the ASRB alternative method in comparison with the conventional method using culture detection. Actero Simultaneous Recovery Broth has a strong ability to provide an ideal growing environment for low numbers of sublethally injured Salmonella enterica and C. sakazakii in powdered infant formula. Single-step enrichment with Actero Simultaneous Recovery Broth reduces presumptive reporting time to as short as 18 hours without the loss of sensitivity and reliability of methods used for detection of Salmonella enterica and C. sakazakii in powdered infant formula. No significant differences were observed in the growth values of C. sakazakii and Salmonella in both monoculture and co-culture using different ratios of each bacterium. The simultaneous recovery of Cronobacter and Salmonella was comparable between the two methods. Among 170 tested samples, no false positives or false negatives were detected by direct plating using the alternative method. Detection by RT-PCR showed no false positives or false negatives using the alternative method. Fig. 2. Growth of Cronobacter sakazakii and Salmonella Agona Co-cultured in Actero Simultaneous Recovery Broth for 16 hours at 35°C Cronobacter Salmonella Monoculture Co-culture of Salmonella/Cronobacter Cronobacter Salmonella Table 2. Experimental Design Matrix Powdered Infant Formula (25 g) Strain S. Agona C. sakazakii Stress Drying Mortality 90% 85% Inoculum Level (CFU/sample) 5.5 2.7 Table 3. Recovery Rates of S. Agona and C. sakazakii in Powdered Infant Formula Detection Method N S. Agona C. sakazakii S. Agona C. sakazakii No Recovery ASRB 16 35/170 45/170 62/170 28/170 Conventional 16 34/170 34/170 63/170 39/170 The performance of RT-PCR detection method following the enrichment with ASRB was assessed using 30 artificially contaminated powdered infant formula samples. 1 Conventional Method 25g + 225 mL BPW 20-24h at 35°C Salmonella RV Broth 1 24h a t 42°C HE/XLD 24h a t 35°C Biochemical Tests C. sakazakii mLST+Vancomycin 2 24h a t 44°C ESIA 24h a t 44°C TSA 44-48h a t 25°C Biochemical Tests Concentration (centrifugation) 3 Biochemical Tests ASRB Method 25g + 225 mL ASRB 16h at 35°C Salmonella RT-PCR HE/XLD, 24h at 35°C C. sakazakii RT-PCR Rapid’Sakazakii, 24h a t 44°C Total Time = 90 - 140 hrs Total Time = 68 hrs Total Time = 19 - 40 hrs PCR DFI + R&PCRF Chromogenic agar Day 3 Day 2 Day 1 Day 4 Day 6 In vitro Culture Studies Matrix Study Design Both strains showed short lag-phases and comparable growth rates in ASRB. Notes: P positive, N negative, FP false positive, FN false negative. Table 4. Performance Parameters for Culture Detection in Powdered Infant Formula Using ASRB Strain Time (h) Total Tested P N FP FN Relative Sensitivity, % Relative Specificity, % FP Rate, % FN Rate, % Test Efficacy, % S. Agona 16 170 97 73 0 0 100 100 0.0 0.0 100 C. sakazakii 16 170 107 63 0 0 100 100 0.0 0.0 100 Notes: P positive, N negative, FP false positive, FN false negative. Table 5. Performance Parameters for RT-PCR Detection in Powdered Infant Formula Using ASRB Strain Time (h) Total Tested P N FP FN Relative Sensitivity, % Relative Specificity, % FP Rate, % FN Rate, % Test Efficacy, % S. Agona 16 30 25 5 0 0 100 100 0.0 0.0 100 C. sakazakii 16 30 21 9 0 0 100 100 0.0 0.0 100 1. ISO6579-1:2017 2. ISO/TS 22964 (2006) 3. BAM Ch. 29 BPW Buffered Peptone Water Notes:
Transcript
Page 1: One-Step Enrichment Broth for the Simultaneous Recovery of DFI … · 2019-07-29 · •Z ] [^lÌl]], 24h at 44°C Total Time = 90-140 hrs Total Time = 68 hrs Total Time = 19 -40

Ratio 1:1000

2

4

6

8

10

Lo

g1

0 U

FC

/mL

Ratio 100:10

2

4

6

8

10

Lo

g1

0 U

FC

/mL

0

2

4

6

8

10

Lo

g1

0 C

FU

/mL

Ratio 1:10

2

4

6

8

10

Lo

g1

0 C

FU

/mL

0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16

0.0

0.1

0.2

0.3

0.4

0.5

0.6

Time (hours)

OD

60

0n

m

Afia Boumail1, Anne Helmer1, Marie-Goreth Nicizanye1, Anna Yattara1, Michael Giuffre2 and Sergiy Olishevskyy1

1FoodChek Laboratories Inc., Ste-Julie, Quebec, Canada 2FoodChek Systems Inc., Calgary, Alberta, Canada

One-Step Enrichment Broth for the Simultaneous Recovery of

Salmonella enterica and Cronobacter sakazakii in Powdered Infant Formula

Salmonella enterica and Cronobacter sakazakii are categorized as dangerous contaminants of powdered infant

formula that represent a serious health risk for newborn infants. Conventional culture methods are time consuming

and not user-friendly for detecting both pathogens. Therefore, the development and implantation of rapid and cost-

effective methods allowing for the simultaneous detection of these pathogens remain important.

The objective of this study was to develop a novel enrichment broth, Actero Simultaneous Recovery Broth (ASRB),

that allows the one-step simultaneous recovery of S. enterica and C. sakazakii followed by both RT-PCR and

culture detection.

Introduction

Conclusions

In vitro Simultaneous Culture Studies

Method Principle

Infant Formula Samples Studies

Fig. 1. Growth of Salmonella Agona and Cronobacter sakazakii

in Actero Simultaneous Recovery Broth

One Step

Enrichment

Sampling

and Dilution

DNA

Isolation

DNA

Amplification

Result

Analysis

18HAs short as

Time-to-Result

RT-PCR

Detection

MAX

40HTime-to-Result

One Step

Enrichment

Sampling

Plating

Incubation

Result

Analysis

Culture

Detection

Table 1. Growth Kinetics Data

Strain Kinetics Parameter ASRB

S. AgonaLag Phase Duration 5.912 ± 0.469

Growth Rate 0.195 ± 0.002

C. sakazakiiLag Phase Duration 4.985 ± 0.609

Growth Rate 0.298 ± 0.013

Notes : N – Number of experiments.

Culture Conditions:

• Initial Inoculum – 20 CFU/well

• Medium Volume – 200 µL

• Temperature – 35°C

• Time – 16 hours

A total of 170 artificially contaminated infant formula samples were examined to evaluate performance of the ASRB

alternative method in comparison with the conventional method using culture detection.

Actero Simultaneous Recovery Broth has a strong ability to provide

an ideal growing environment for low numbers of sublethally injured

Salmonella enterica and C. sakazakii in powdered infant formula.

Single-step enrichment with Actero Simultaneous Recovery Broth

reduces presumptive reporting time to as short as 18 hours without

the loss of sensitivity and reliability of methods used for detection of

Salmonella enterica and C. sakazakii in powdered infant formula.

No significant differences were observed in the growth values of C. sakazakii and Salmonella in

both monoculture and co-culture using different ratios of each bacterium.

The simultaneous recovery of Cronobacter and Salmonella was comparable between the two methods.

Among 170 tested samples, no false positives or false negatives were detected by direct plating using the alternative

method.

Detection by RT-PCR showed no false positives or false negatives using the alternative method.

Fig. 2. Growth of Cronobacter sakazakii and Salmonella Agona Co-cultured in Actero

Simultaneous Recovery Broth for 16 hours at 35°C

Cronobacter

Salmonella

Monoculture Co-culture of Salmonella/Cronobacter

Cronobacter sakazakii Salmonella Agona0

2

4

6

8

10

Log1

0 UFC

/mL

SRB

BPW

CronobacterSalmonella

Cronobacter sakazakii Salmonella Agona0

2

4

6

8

10

Log1

0 UFC

/mL

SRB

BPW

Table 2. Experimental Design

Matrix Powdered Infant Formula (25 g)

Strain S. Agona C. sakazakii

Stress Drying

Mortality 90% 85%

Inoculum Level

(CFU/sample)5.5 2.7

Table 3. Recovery Rates of S. Agona and C. sakazakii in Powdered

Infant Formula

Detection

MethodN S. Agona C. sakazakii

S. Agona

C. sakazakiiNo Recovery

ASRB 16 35/170 45/170 62/170 28/170

Conventional 16 34/170 34/170 63/170 39/170

0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16

0.0

0.1

0.2

0.3

0.4

0.5

0.6

Time (hours)

OD

60

0n

m

Salmonella

Cronobacter

0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16

0.0

0.1

0.2

0.3

0.4

0.5

0.6

Time (hours)

OD

60

0n

m

Salmonella

Cronobacter

The performance of RT-PCR detection method following the enrichment with ASRB was assessed using 30 artificially

contaminated powdered infant formula samples.

1

Conventional Method

25g + 225 mL BPW

20-24h at 35°C

Salmonella

RV Broth1

24h at 42°C

HE/XLD

24h at 35°C

Biochemical Tests

C. sakazakii

mLST+Vancomycin2

24h at 44°C

ESIA

24h at 44°C

TSA

44-48h at 25°C

Biochemical Tests

Concentration

(centrifugation)3

Biochemical Tests

ASRB Method

25g + 225 mL ASRB

16h at 35°C

Salmonella

•RT-PCR

•HE/XLD, 24h at 35°C

C. sakazakii

•RT-PCR

•Rapid’Sakazakii,

24h at 44°C

Total Time = 90-140 hrs Total Time = 68 hrs Total Time = 19-40 hrs

•PCR

•DFI + R&PCRF Chromogenic agar

Day 3

Day 2

Day 1

Day 4

Day 6

In vitro Culture Studies Matrix Study Design

Both strains showed short lag-phases and comparable growth rates in ASRB.

Notes: P – positive, N – negative, FP – false positive, FN – false negative.

Table 4. Performance Parameters for Culture Detection in Powdered Infant Formula Using ASRB

StrainTime

(h)

Total

TestedP N FP FN

Relative

Sensitivity, %

Relative

Specificity, %

FP Rate,

%

FN Rate,

%

Test

Efficacy, %

S. Agona 16 170 97 73 0 0 100 100 0.0 0.0 100

C. sakazakii 16 170 107 63 0 0 100 100 0.0 0.0 100

Notes: P – positive, N – negative, FP – false positive, FN – false negative.

Table 5. Performance Parameters for RT-PCR Detection in Powdered Infant Formula Using ASRB

StrainTime

(h)

Total

TestedP N FP FN

Relative

Sensitivity, %

Relative

Specificity, %

FP Rate,

%

FN Rate,

%

Test

Efficacy, %

S. Agona 16 30 25 5 0 0 100 100 0.0 0.0 100

C. sakazakii 16 30 21 9 0 0 100 100 0.0 0.0 100

1. ISO6579-1:2017

2. ISO/TS 22964 (2006)

3. BAM Ch. 29

BPW – Buffered Peptone WaterNotes:

Recommended