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e- BioResource: An e-Newsletter of the Department of Biochemistry University Department of Biochemistry Vol 2:1, Jan 2014 Editorial Board Chief Editor Prof. G. B. Shinde Head, Dept. Of Biochemistry Advisors Prof. M. B. Patil Prof. Swati Kotwal Prof.V.G. Meshram Editor Dr. Archana Moon Circulation Incharge Ms. Komal Talreja Creative directors Anuja Rai Drishti Singh Email: [email protected] Estb 1946 Page 1
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Page 1: University Department of Biochemistry Department of Biochemistry Vol 2:1, ... Screening and Isolation of pectinase from Agro-waste ... citrus peel, orange peel and orange bagagges

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University Department of

Biochemistry

Vol 2:1, Jan 2014

Editorial Board

Chief Editor

Prof. G. B. Shinde Head, Dept. Of

Biochemistry

Advisors

Prof. M. B. Patil Prof. Swati Kotwal

Prof.V.G. Meshram

Editor

Dr. Archana Moon

Circulation Incharge

Ms. Komal Talreja

Creative directors

Anuja Rai Drishti Singh

Email: [email protected] Estb

1946

Page 1

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Email: [email protected]

[email protected]

Vol 2:1, Jan 2014

STUDENT ACTIVITIES DURING AUGUST 2013 TO

DECEMBER 2013

1) LEAP Foundation- Seminar attended by 15 students of M.Sc II yr at Nagpur

on 24th

August 2013

2) National seminar on “Advances in Microbiology and their impact on Public

Health” at Bhandara attended by 5 students

3) State Seminar M. Sc. II students and Research Scholars at Pulgaon, 10th Jan,

2014

4) State Seminar M. Sc. II students and research Scholars at Pulgaon, 29th Jan,

2014

Obituarary

10/7/1964-21/10/2014

Mr.Sibal Biswas, an alumnus of 1992 batch, left for the heavenly

abode on 21th October, 2013. The Department expresses deep

condolences for the departed soul.

Page 2 Estb 1946

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1) Antifilarial activity of Indigenous Medicinal plants:

The Tropical disease, Human Lymphatic filariasis has been recognized by World

Health Organization (WHO) as one of the ten diseases in its Tropical Disease Research (TDR)

scheme highlighting the huge disease burden. Global programme consequently was

launched for elimination of filariasis (GPELF).Currently most popularly used medicine,

diethylcarbamazine (DEC) has been reported for lack of compliance due to prolonged use by

mass drug administration strategy. Hence there is dier demand for alternate options which

naturally relies on herbal remedies in terms of safety, efficacy and cultural acceptability.

In vitro effect of four herbal plant leaves extract were studied and found

significant anti-filarial activity which contributes to the development of data based

for novel drug candidates for Human Lymphatic filariasis.

2) Screening and Isolation of pectinase from Agro-waste

Pectinase enzymes are one of the most important enzymes for industries such as

fruit juice, paper and pulp industry. They contribute approximately 25 % in the global sales

of food enzymes. These enzymes are widely distributed in bacteria, fungi and plants .During

study various different fungal strains have been used in pectinase--production. The

agriculture waste such as wheat bran, citrus peel, orange peel and orange bagagges have

been used in pectinase production in Solid State Fermentation (SSF). Extracellular pectinases

are easier and cheaper to use in greater quantities. Suitable substrate and various parameters

like pH, temperature and purification were studied for maximum production of pectinases.

Still further work on various parameters is going on.

Email: [email protected]

[email protected]

Estb:1946 Page 3

Prof.V.G.Meshram

Department of Biochemistry

RTM Nagpur University

Vol 2:1, Jan 2014

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3) In-vitro anti-bacterial activity and antioxidant study of some traditionally

used spices.

Spices constitute an important group of agricultural commodities acting as

bacteriostatic and therapeutic agents. The phytochemicals present in the spices acting as

anti microbial represents a vast untapped source of medicine and hence have enormous

therapeutically potential. During study phytochemical analysis were carried out to

determine the principal bioactive compounds responsible for antimicrobial activity and

further anti-oxidant activity is also carried out. There is a need for extensive research for

their better economic and medicinal use providing scientifically affiliated remedies against

various pathogens.

4) Study the effect of hepatocellular damage due to DOTS Therapy on

Pulmonary Tuberculosis patients of Nagpur DOTS centers.

Pulmonary Tuberculosis is one of the oldest diseases of mankind affecting millions of people all over the world. In spite of global development of anti-tubercular drug, Directly Observed Treatment Short course (DOTS) and BCG vaccination, tuberculosis still remains a public health problem. All anti-tuberculosis drug with possible acceptation of Streptomycin can cause hepatitis ,but the risk is higher with some other drug. Anti-Tuberculosis drugs induced hepatotoxicity causes significant morbidity and mortality and may require drug regimen . However, factors’ predicting it is still controversial. During the study hepatic damage is assessed at the earliest with the help of liver function test, serum protein level changes, serum cholesterol level changes were analyzed and demographic parameters also studied .This work is funded by UGC, New Delhi as a Major Research Project. Still further research work is going on.

5) Investigating the effect of oxidative stress and mitochondrial DNA in

induction of Type II Diabetic Mellitus.

India loads the world with the largest number of Diabetic people being termed as

“Diabetes capital of the World”. It has been reported that mutation in mitochondrial

DNA can lead to type II Diabetes Mellitus. There have been 40 different

mitochondrial mutation catalogue that results in Diabeties Mellitus. Our study relates with

oxidative stress,mitochondrial DNA, type II Diabeties and also determining

the frequeny of 3243A/G and 3316G/A mutation in Nagpur area Populaton.

Further we may study the effect of medicinal plants on Diabetes Mellitus.

Email: [email protected] Page 4 EStb

1946

Vol 2:1, Jan 2014

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Picture gallery

Prof. M. C. Nath Memorial Lecture Series 2013

Inauguration of Annual Gathering 2014 ‘Aura’ of University Department of Biochemistry (left).

Activities during annual gathering.(right)

Email: [email protected] Estb 1946 Page 5

Vol 2:1, Jan 2014

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Email: [email protected] Page 6 Estb 1946

Vol 2:1, Jan 2014

Awareness and Diagnostic

Camp organized by RTMN

University Department of

Biochemistry on 14th

November,2013.

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D IABETIC BONE : A SWEETER MOVE TOWARDS

AGING FRACTURES

Sakshi Siriah, Research Scholar

Supervisor: Prof. Swati Kotwal

University Department of Biochemistry RTM Nagpur University

iological processes in all cells

and organs require energy,

skeleton being the largest organ

in the mammalian group and have high

energy demand. Bone is considered as an

energy consuming organ as it is constantly

destroyed and regenerated through a well

defined and regulated process termed as

bone remodeling. This process of bone

turnover is governed by two host cells, the

bone forming cells; (Osteoblast) and the

bone resorbing cells (Osteoclast). These

cells are involved in a complex set of

interaction occurring between adipose

tissue, central nervous system, bone and

pancreas that integrate bone remodeling,

glucose and energy metabolism.

Osteoporotic bone is characterized by

decreased bone mass and increased bone

turnover leading to increased fracture risk.

Insulin, the key hormone regulating

glucose homeostasis, also displays a

molecular link between bone remodeling

and energy metabolism. Diabetes mellitus,

a group of metabolic disorder is broadly

classified into two types depending on

which the body either does not produce

insulin or is not able to utilize it. Thus,

these disorders form a complex network of

reactions, resulting into crossing over of

various pathways. The situation is more

critical with simultaneous presence of two

targeted age related disorder; diabetes

mellitus in adults and Osteoporosis.

The cross talks between insulin and

Bone: The interaction between insulin and

bone is well documented, functional

insulin receptors are known to be present

on bone forming osteoblast lineage. As

primary osteoblasts and osteoblastic cell

lines when exposed to physiological levels

of insulin increases bone anabolic markers

including collagen synthesis, alkaline

phosphatase activity and glucose uptake.

Thus, insulin signaling increases

osteoblast proliferation and differentiation.

This hormonal network is regulated by

signals emerging from Osteocalcin, a bone

derived factor produced during bone

formation. Similar to other hormones,

osteocalcin is synthesized as pre pro-

osteocalcin which is processed into pro-

osteocalcin in the endoplasmic reticulum.

Before being secreted by osteoblasts,

B

University Department of Biochemistry

Vol 2:1, Jan 2014

Estb

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1946

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osteocalcin undergoes vitamin-K

dependent carboxylation of three glutamic

acid residues which endows the molecule

with high affinity for bone matrix. During

this process a small portion remains

uncarboxylated and is secreted into the

circulation. This uncarboxylated form of

osteocalcin has been proposed to act as a

hormone that stimulates insulin production

and

secretion

by

pancreatic

cells and

adipolectins

by

adipocytes.

Thus, it is

this bone-

pancreas

endocrine loop through which insulin

signaling in osteoblast ensures osteoblast

differentiation and osteocalcin production

which in turn regulates insulin sensitivity

and pancreatic insulin secretion to control

glucose homeostasis.

The crossing over of Diabetes

mellitus, Osteoporosis and Aging:

Insulin does show an anabolic effect

on bone and vice-versa, but the crossing

over of diabetes and osteoporosis in aging

has always been a matter of debate. There

are studies reporting four folds increase in

aging fractures in patients with insulin

resistance and diabetes mellitus. Insulin

resistance in diabetes disturbs the whole

body homeostasis, increased blood

glucose levels are associated with

increased urinary calcium loss, resulting in

a negative calcium balance. This plasma

calcium deficiency is maintained by the

activation of signaling cascade through

parathyroid hormone leading to release of

calcium from bone, causing bone fragility.

Patients with insulin resistance display a

low bone mineral density as compared to

non diabetic persons. On the other hand,

osteoporosis a chronic age related diseases

charact

erized

by

increase

bone

turn

over

release

increase

d bone

derived

osteocalcin into systemic circulation,

which in turn stimulate insulin production

in diabetic condition. But insulin

sensitivity causes increased lipolysis and

fat accumulation leading to increased

energy expenditure.

Thus bone health is of important

consideration in diabetics and fall

associated with diabetes-related

comorbidities are supposed to be the

possible cause of fractures in age related

osteoporotic conditions. Adequate

glycemic control and prevention of bone

loss should be a mainstay of current

therapies to lower fracture risk.

University Department of Biochemistry Estb 1946 Page 8

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BETA LACTAM RESISTANCE VIA PENICILLIN

BINDING PROTEIN IN B ACTERIA

PALLAVI SAHARE, Research Scholar, Department of Biochemistry,

RTM Nagpur University, Nagpur- 440033

acteria are a leading cause of

infections and are illustrious by

their capability to cause infection

in every tissue and organ system of the

human body. Therefore, the rapid

eradication of pathogenic bacteria is of

utmost importance in the treatment and

control of infections. The introduction of

penicillin and other β-lactam antibiotics

into clinical practice was able to reduce

the cataclysmic effect of bacterial diseases

in community, but, these advances in

medical and pharmaceutical sciences were

followed by emergence of resistance of

bacteria towards these antibiotics.

Bacteria show resistance to standard β-

lactam antibiotics by different mechanisms

viz., decreased permeability of the outer

membrane, export of the antibiotics by

efflux pump (these two mechanisms are

found in Gram negative organisms),

degradation of antibiotics by the action of

β-lactamases and alteration of penicillin

binding proteins (PBPs). PBPs are the

targets of β-lactam antibiotics and are

characterized by the presence of penicillin-

binding domain. These enzymes catalyse

the last stages in peptidoglycan

polymerisation which is a major

constituent of the bacterial cell wall. PBPs

are membrane bound enzymes that have

evolved from serine proteases.

PBPs are commonly classified into

three categories according to their

molecular weight and domain

structure: the high-molecular-weight

(HMW) members of this family

(generally ≥60 kDa) fall into two broad

families called class A and B and low-

molecular weight (LMW) PBPs. HMW

carry the transglycosylase and

transpeptidase activities which are

involved in polymerization and cross-

linking of the glycan strands. On the

other hand, LMW have commonly

been found to possess d,d-

carboxypeptidase activity which can

remove the terminal d-alanine of the

peptide side chains and thereby

prevent the side chain from serving as

a donor in the formation of a peptide

cross-link. β-lactam antibiotics acts

as substrate for these membrane

bound enzymes, that covalently binds

to PBP active site serine and

inactivates PBPs. The inhibition of

PBPs produces an imbalance in the

cell wall metabolism that results in

lysis or growth inhibition.

B

University Department Biochemistry Page 9 Estb

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Nutraceuticals: A better alternative

therapeutic approach for Osteoporosis

SMITA R. BADOLE, RESEARCH SCHOLAR, SUPERVISOR: DR. SWATI KOTWAL, UNIVERSITY DEPARTMENT OF BIOCHEMISTRY, RTM NAGPUR UNIVERSITY, NAGPUR

steoporosis is a heterogeneous

cluster of abnormal processes

resulting in net loss of bone. It is one of the

major public health problems causing 30%

mortality in the first year following the

osteoporotic hip fracture. In females due to

ageing and menopause, bone density

decreases and bones become fragile. Age is a

chief single predator for osteoporosis in

women but enhanced oxidative stress is also

reported as a major cause. Bone remodelling

is a normal process involving bone formation

by osteoblasts and resorption by osteoclasts.

But in osteoporosis this balance is lost.

Several studies have reported impact of

oxidative stress on osteoclast differentiation as

a cause of increased bone resorption.

Furthermore in vitro and in vivo studies have

suggested important role for oxidative stress

in the pathogenesis of osteoporosis. Some of

the factors involved in inflammation such as

C-reactive protein, IL-6, TNF and contribute to

pathogenesis of osteosteoporosis.

Modern therapies that are available

for treating osteoporosis result in

various side effects. So the

scientists and doctors have turned

towards the use of nutraceuticals

as a better complementary and

alternative approach for the

treatment of osteoporosis.

Medicinal plants are storehouse of

many secondary metabolites as

they are well documented in

reducing the risk of osteoporosis.

Plant phytochemicals are divided

into phenolics or polyphenols,

alkaloids, carotenoids, sterols,

terpenes and fibers. Polyphenols

are further divided into flavonoids,

phenolic acids, stilbenes, tannins,

lignans and coumarines.

Flavonoids such as kaempferol,

quercetin, icariin and ikarisoside A

from plants are reported to possess

anabolic effect on osteoblast

proliferation, differentiation and

mineralisation. Quercetin and

O

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kaempferol stimulates osteoblast

differentiation via ERK and ER

mediated pathways and also activates

anti- inflammatory mechanism thus

inhibiting osteoclast differentiation

and function. Icariin is reported to

increase ER-dependent cell

proliferation, alkaline phosphatase

(ALP) activity, gene expression of OPG

and the OPG/ RANKL ratio and

ikarisoside A inhibited

osteoclastogenesis. Role of caffeic acid

and gallic acid and other types of

phenolic acids have been studied in

the treatment of osteoporosis. Caffeic

acid suppresses osteoclastogenesis

and bone loss through inhibiting

RANKL-induced MAPKs and Ca2+-

NFATc1 signaling pathways.

Resveratrol, natural stilbene, through

ERK1/2 and p38 MAPK signalling

pathways activate osteoblast related

genes. Lignans are known powerful

antioxidants and they are also

reported to possess estrogen-like

activity. Coumarines, a type of

phytochemical is reported to inhibit

formation and differentiation of

osteoclasts. Altogether these

phytochemicals from plants acts as a

better substitute to synthetic drugs

those are available for the treatment

of osteoporosis.

Currently our lab is engaged in

developing formulations of various

medicinal plants and basic bone

mineralising nutrients to act as

anabolic bone therapy for the

treatment and prevention of

osteoporosis.

University Department of Biochemistry Estb 1946 Page 11

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Potential of

Quantum Dots in

Health and Disease

Anup Ka le DEPARTMENT OF BIOSCIECNES AND

TECHNOLOGY, DEFENCE INSTITUTE OF

ADVANCED TECHNOLOGY (DU), PUNE –

411025, INDIA

recent years scientific field has

seen major emphasis on the

interdisciplinary approaches

in addressing issues in

fundamental biosciences and biomedicine.

While the approach is not new, emergence of

Nanotechnology has prompted enormous

scientific and technological developments.

Nanobiotechnology is the convergence of

Biosciences and Nanotechnology offering

unique opportunities in Life sciences from basic

biomolecular understanding to diagnostics and

therapeutics. Different types of nanomaterials

like magnetic nanoparticles, nobel metal

nanoparticles (Au, Ag, etc.), graphene,

Quantum dots (QDs) are presently at the

frontiers of scientific discovery and

explorations of commercial potential.

Nanomaterials with different property features,

shapes and sizes that could revolutionize the

field of biomedicine. QDs, the semiconductor

nanoparticles are one such promising

candidate, particularly in fluorescence based

devices.

Fluorescence is a widely used tool in Life

Sciences. As the field is growing there is

increasing demand to measure more

biological indicators simultaneously and

efficiently. Organic dyes and protein

fluorophores are conventionally used for

fluorescence.

Multimodal imaging has been tried with

dyes like measuring the number of

parameters on cellular antigens with flow

cytometry, combinational labeling in

cytogenetics for spectral karyotyping.

However, conventional dyes impose

stringent requirements on the optical

systems used to make these measurements.

Apart from these, their narrow excitation

spectrum, broad emission profiles, and low

photo bleaching thresholds have limited

their effectiveness in long-term imaging

and multiplexing. The utility of protein

fluorophores is restricted due to constrains

of size and complexity in functionalization.

In comparison with organic dyes and

protein fluorophores, QDs exhibit unique

photophysical and photochemical

properties with prominence as fluorescence

probes in sensitive optical biosensing

applications over a wide range, such as

immunoassays, nucleic acid detection,

biomolecule sensing, and catalysis

monitoring. QDs possess high quantum

yield, broad excitation spectra and narrow

band emission, robustsness, photostability,

ease of biofunctionalization. Developments

in surface engineering and bioconjugation

strategies will keep on benefiting the

specificity and versatility of QD-based in

vitro sensing methods.

QDs in the size range of 1 to 10 nm offer

unique photochemical and photophysical

properties not available with common

organic dyes and protein fluorophores.

QDs exhibit discrete energy levels

In

Vol 2:1, Jan 2014

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corresponding to the size of the

nanoparticle which results in discrete color

emission. The tunable optical and

physicochemical features make them

versatile as direct probes or as sensitizers

replacing traditional probes. These

fluorescent probes offer highly sensitive

optical biosensing applications such as

immunoassays, biomarker detection,

nucleic acid and protein sensing, catalytic

monitoring and biomolecular imaging.

One of the most exciting properties of QDs

is that depending on their size, the QDs,

excited at appropriate wavelengths, will

emit light in different color zones.

Observing the real time dynamics of bio-

molecules in live cells can address

fundamental questions in life sciences

like molecular interactions, cellular

functions, and response to environmental

cues. This understanding can be explored

for developing powerful tools for disease

diagnostics and therapeutics. The

tremendous development of proteomics

and genomics in the last few years has

helped to exploit these differences and

find out biomarkers for different diseases.

With the application of new imaging

methods and use of brighter and more

stable nano-probes like QDs can be used

for high resolution and long timescale

imaging. This will allow tracking even a

single biomolecule in real time and

observing actual molecular dynamics.

Quantum nanobeads with different colors

and different intensities are used with

high uniformity, accuracy and

reproducibility for multimodal imaging

that can encode over 1 million

combinations. The development of

Quantum dot technology opens up new

possibilities for diagnostics, direct

immunolabeling, in situ hybridization etc.

In addition, nanocrystal probes may

prove useful for other contrast

mechanisms such as x-ray fluorescence,

x-ray absorption, electron microscopy,

and scintillation proximity imaging, and

the use of far red or infrared-emitting

nanocrystals as tunable, robust infrared

dyes is another possibility.

QDs can also prove useful in developing

non-invasive molecular imaging

technologies. It has great potential in

tracing techniques: viral particles to be

followed in vivo, analyzing of drug

molecules in biological systems, and

tracking of tumor cells. These techniques

involving metal and semiconductor

nanoparticles for molecular profiling

studies and multiplexed biological assays

are under intense development. Various

issues like target specific molecules,

biocompatibility, and toxicity need to be

addressed while applying this technology

to the Life sciences.

The joint venture between different

disciplines of Science, Engineering and

Nanotechnology can revolutionize the

field of biomedicine and health care. In

anticipation to this the expertise, tools and

intellect from different disciplines need to

be brought together.

University Department of Biochemistry Estb 1946 Page 13

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References:

1)Kirdolf BA, Smith AM, Stokes TH, WanYoung AN, Nie S(2013) Semiconductor

Quantum Dots for Bioimaging and Biodignostic Applications, Annual review

chemistry 6: 143-62

2)Natalia C. Tansil and Zhiqiang Gao: Nanoparticles in biomolecular detection Nano Today, 2006, 1: 28-37

3)Alivisatos AP, Gu W, Larabell C (2005) Quantum dots as cellular probes. Annu Rev Biomed Eng 7: 55–76.

4)Gao X, Yang L, Petros JA, Marshall FF, Simons JW, Nie S (2005) In vivo molecular and cellular imaging with quantum dots. Curr Opin Biotechnol 16:63–72

5)Fortina P, Kricka LJ, Surrey S, Grodzinski P (2005) Nanobiotechnology: the promise and reality of new approaches to molecular recognition. Trends Biotechnol 23: 168 – 173

6)Roco MC (2003) Nanotechnology: convergence with modern biology and medicine. Curr Opin Biotechnol 14:337–346.

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INFERTILITY IN WOMEN

M S . K O M A L T A L R E J A , R E S E A R C H S C H O L A R ,

D E P A R T M E N T O F B I O C H E M I S T R Y ,

R T M N A G P U R U N I V E R S I T Y , N A G P U R .

emale infertility varies widely by

geographic location worldwide. In

2010, there was an estimated 48.5

million infertile couples; during 1990 to 2010 there

was little change in the levels of infertility around

the world. According to the Centers for Disease

Control, 1/3 of the time the diagnosis is due to

female infertility, 1/3 of the time it is linked to male

infertility and the remaining cases of infertility are

due to a combination of factors from both partners.

Issues with infertility are more common than most

people think. Infertility is caused due to

malnutrition, diseases, and other malformations of

the uterus. It affects women due to the cultural and

social stigma associated with it.

Some causes of female infertility are-

Damage to fallopian tubes: Damage to the

fallopian tubes can prevent contact between the egg

and sperm. The egg travels from the ovary to the

uterus (womb) where the fertilized egg grows. If the

uterus or the fallopian tubes are damaged, the

woman may not be able to conceive naturally.

Hormonal causes: Some women have problems

with ovulation. Ovulation is the monthly release of

an egg. Synchronized hormonal changes leading to

the release of an egg from the ovary and the

thickening of the endometrium (lining of the uterus)

in preparation for the fertilized egg do not occur.

Cervical causes: A small group of women may

have a cervical condition in which the sperm cannot

pass through the cervical canal due to abnormal

mucus production or a prior cervical surgical

procedure. This may be treated with intrauterine

inseminations.

Uterine causes: Abnormal anatomy of the

uterus; the presence of polyps and fibroids.

Unexplained infertility: The cause of

infertility in approximately 20% of couples

cannot be determined using the currently

available methods of diagnosis.

Some conditions are-

Endometriosis - Cells that are normally found

within the lining of the uterus start growing

elsewhere in the body.

PCOS (polycystic ovarian syndrome) – Women

suffering from this syndrome have functionally

abnormal ovaries with abnormally high levels of

androgen. About 5% to 10% of women of

reproductive age are affected with pcos.

Medical History and Physical Examination

The first step in any infertility checkup is a

complete medical history and physical

examination. The doctor will ask about the

patient's history like menstrual history, lifestyle

issues (smoking, drug and alcohol use, and

caffeine consumption), any medications being

taken, and a profile of the patient's general

medical and emotional health can help the

doctor decide on appropriate tests.

Treatment:Various treatment strategies are

available viz.,

Assisted Reproductive Technology (ART)

Intra-cytoplasmic Sperm injection (ICSI)

In-vitro Fertilization (IVF)

Intrauterine Insemination (IUI)

Presently, various research groups are

aiming towards an early stage diagnostic

biomarker that will help in diagnosis of various

conditions.

F

Vol 2:1, Jan 2014

University Department of Biochemistry Page 15 Estb 1946

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