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Physical Cell Biology - ManningGroup · 2018-10-11 · Figure 8.3 Physical Biology of the Cell (O...

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10/10/18 1 Physical Cell Biology Lecture 14:DNA and random walks DNA: Phillips, Chapter 8,, Pollard chapter 7-9 Levels of Abstraction Microtubule DNA Polyethylene
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Page 1: Physical Cell Biology - ManningGroup · 2018-10-11 · Figure 8.3 Physical Biology of the Cell (O Garland Science 2009) 1, nr— 3 0.08 0.07 0.06 0.05 0.04 0.03 0.02 0.01 -40 -20

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Physical Cell BiologyLecture 14:DNA and random walks

DNA: Phillips, Chapter 8,, Pollard chapter 7-9

Levels of AbstractionMicrotubuleDNA

Polyethylene

Page 2: Physical Cell Biology - ManningGroup · 2018-10-11 · Figure 8.3 Physical Biology of the Cell (O Garland Science 2009) 1, nr— 3 0.08 0.07 0.06 0.05 0.04 0.03 0.02 0.01 -40 -20

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Molecules as chains of small units

Page 3: Physical Cell Biology - ManningGroup · 2018-10-11 · Figure 8.3 Physical Biology of the Cell (O Garland Science 2009) 1, nr— 3 0.08 0.07 0.06 0.05 0.04 0.03 0.02 0.01 -40 -20

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Polymer configuration as a random walk

Distribution of End to End Distances

Page 4: Physical Cell Biology - ManningGroup · 2018-10-11 · Figure 8.3 Physical Biology of the Cell (O Garland Science 2009) 1, nr— 3 0.08 0.07 0.06 0.05 0.04 0.03 0.02 0.01 -40 -20

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Radii of Gyration for Different Chromosomes

Persistence Length

Figure from : Liverpool, T.B., “Active gels: where polymer physics meets cytoskeletal dynamics” Philosophical Transactions of the Royal Society – A, 364(1849), 2006, p. 3335-3355

Page 5: Physical Cell Biology - ManningGroup · 2018-10-11 · Figure 8.3 Physical Biology of the Cell (O Garland Science 2009) 1, nr— 3 0.08 0.07 0.06 0.05 0.04 0.03 0.02 0.01 -40 -20

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DNA and persistence length scales

Single Molecule Mechanics

AFM

Page 6: Physical Cell Biology - ManningGroup · 2018-10-11 · Figure 8.3 Physical Biology of the Cell (O Garland Science 2009) 1, nr— 3 0.08 0.07 0.06 0.05 0.04 0.03 0.02 0.01 -40 -20

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Force extension experiments

Optical trap/tweezers

Page 7: Physical Cell Biology - ManningGroup · 2018-10-11 · Figure 8.3 Physical Biology of the Cell (O Garland Science 2009) 1, nr— 3 0.08 0.07 0.06 0.05 0.04 0.03 0.02 0.01 -40 -20

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Magnetic tweezers

Pipette based force measurements

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