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Predispositional genome sequencing in healthy adults: Early ......Predispositional genome sequencing...

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Acknowledgments The PeopleSeq Study is funded by NIH grant U01-HG006500 and by an unrestricted grant from Illumina, Inc. Predispositional genome sequencing in healthy adults: Early findings from the PeopleSeq Study Daiva Nielsen 1 , Margaret Helm 1 , Erica Ramos 2 , Madeleine Ball 3 , George Church 3-5 , Michael Linderman 6 , Nathaniel Pearson 7 , Scott Roberts 8 , Saskia Sanderson 6,9 , Caroline Weipert 1 , Eric Schadt 6 , Robert Green 1,4,5,10 1 Division of Genetics, Department of Medicine, Brigham and Women’s Hospital. 2 Illumina, Inc. 3 PersonalGenomes.org. 4 Harvard Medical School. 5 Broad Institute of MIT and Harvard. 6 Icahn School of Medicine at Mount Sinai. 7 New York Genome Center. 8 University of Michigan School of Public Health. 9 Health Behaviour Research Centre, University College London. 10 Partners Personalized Medicine. Motivations for Pursuing PGS Who are you sharing your PGS results with? Family (92%) Friends (68%) Colleagues (64%) HCPs (58%) Introduction Several programs offer personal genomic sequencing (PGS) to ostensibly healthy adults for education, research and potential health insights. The PeopleSeq Study aims to understand the medical, behavioral and economic impact of PGS among healthy adults. The PeopleSeq Study works with multiple cohorts that provide whole genome or whole exome sequencing to healthy individuals. PeopleSeq investigators have collaborated on the development of a standardized survey to query PGS participants about their responses to and actions after receiving their results. Assessed outcomes using a web-based survey from three PGS cohorts: Ø Illumina’s Understand Your Genome (UYG) program – 121 responses Ø Harvard’s Personal Genome Project (PGP) – 123 responses Ø Mount Sinai’s HealthSeq Study (HealthSeq) – 14 responses Respondent Characteristics (n=258) Future Directions How difficult do you think it would be for someone to identify you from your genome sequence? 9% 27% 30% 26% 8% Impossible Very Difficult Difficult Not very difficult Easy HCP = healthcare provider Respondent Actions Post-Disclosure Differences between HCPs and non-HCPs Motivations Proportion (Very/ Somewhat Important) Personal interest in genetics in general 99% Curiosity about my genetic make-up 98% Desire to participate in research to help others 92% Interest in finding out things to do to improve my health 81% Interest in learning about my response to medications 81% It seemed fun and entertaining 77% Desire to plan for the future 69% Interest in my ancestry 66% Interest in finding out about personal disease risk 41% Concern about family history of possible or confirmed genetic condition* 21% Characteristics Proportion Mean Age (Range) 53 (22-92) Male 67% Caucasian 85% Doctorate or Professional Degree 77% Income $100,000 76% Married 67% Has Child(ren) 66% Healthcare Provider or Clinical Researcher 24% Methods Agreement with attitudinal items HCPs (n=58) Non- HCPs (n=192) χ 2 p-value Very comfortable with the idea of sharing genome data 71% 64% 0.32 Discussed results with a healthcare provider 62% 46% 0.04 Health insurance should cover PGS 50% 71% 0.004 Genetic information should be part of a standard medical record 71% 89% 0.001 Tests like these should only be available through a doctor 39% 22% 0.008 People have a right to access their own genetic information without going through a medical professional 62% 86% <0.0001 The knowledge I gained about PGS through this process has influenced my medical practice 59% n/a n/a *Respondents motivated by family history of a possible genetic condition were more likely than others to report learning something from PGS that would improve their health (p=0.003). Social network services: 8% Health/disease-based social network services: 7% Would you share your genome sequence publicly? Only 2% indicated they would not share their genome data. Note: As a requirement for enrollment in PGP, participants agree to have a copy of their Genome Research Report shared publicly. Other sites do not have this requirement. Yes, with my identity attached 37% Yes, but anonymously 79% Personal Genome Sequencing (PGS) Genomic Results Reported PeopleSeq Survey Sent PGS Group Ordering MD Return of Results (MD/GC) Self Exploration Access to Raw Data UYG - HealthSeq - - PGP - - - Have your results prompted you to make an appointment with any healthcare provider(s)? No 80% Yes 15% I plan to 5% 12% of respondents reported having a medical exam or procedure based on their sequencing results . 76% 17% 35% Diagnostic test of procedure DNA sequence confirmation Other *Respondents could select more than one option Expand number of PGS cohorts Ø 10,000 potential participants to survey Implement pre/post survey design to capture initial impact of PGS Create annual follow-up surveys to track outcomes of PGS longitudinally Comparison of PGS Cohort Details Illumina UYG 3,400 participants CEO/MD/PhD Genome Projects (Thomas Caskey) 150 participants Harvard Personal Genome Project (George Church) 1,000 participants Mount Sinai Wellness Study (Eric Schadt) 500 participants Nevada Personalized Medicine Initiative (Martin Schiller) 300 participants Pioneer 100 (Lee Hood) 3,000 participants MedSeq & BabySeq Projects (Robert Green) 175 participants The PeopleSeq Consortium 2016
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Page 1: Predispositional genome sequencing in healthy adults: Early ......Predispositional genome sequencing in healthy adults: Early findings from the PeopleSeq Study Daiva Nielsen 1 , Margaret

Acknowledgments The PeopleSeq Study is funded by NIH grant U01-HG006500 and by an unrestricted grant from Illumina, Inc.

Predispositional genome sequencing in healthy adults: Early findings from the PeopleSeq Study Daiva Nielsen1, Margaret Helm1, Erica Ramos2, Madeleine Ball3, George Church3-5, Michael Linderman6, Nathaniel Pearson7, Scott Roberts8,

Saskia Sanderson6,9, Caroline Weipert1, Eric Schadt6, Robert Green1,4,5,10 1Division of Genetics, Department of Medicine, Brigham and Women’s Hospital. 2Illumina, Inc. 3PersonalGenomes.org. 4Harvard Medical School. 5Broad Institute of MIT and Harvard.

6Icahn School of Medicine at Mount Sinai. 7New York Genome Center. 8University of Michigan School of Public Health. 9Health Behaviour Research Centre, University College London. 10Partners Personalized Medicine.

Motivations for Pursuing PGS

Who are you sharing your PGS results with? Family (92%)

Friends (68%)

Colleagues (64%) HCPs

(58%)

Introduction•  Several programs offer personal genomic sequencing (PGS) to ostensibly

healthy adults for education, research and potential health insights.

•  The PeopleSeq Study aims to understand the medical, behavioral and economic impact of PGS among healthy adults.

•  The PeopleSeq Study works with multiple cohorts that provide whole genome or

whole exome sequencing to healthy individuals. •  PeopleSeq investigators have collaborated on the development of a

standardized survey to query PGS participants about their responses to and actions after receiving their results.

•  Assessed outcomes using a web-based survey from three PGS cohorts: Ø  Illumina’s Understand Your Genome (UYG) program – 121 responses Ø  Harvard’s Personal Genome Project (PGP) – 123 responses Ø  Mount Sinai’s HealthSeq Study (HealthSeq) – 14 responses

Respondent Characteristics (n=258)

Future Directions

How difficult do you think it would be for someone to identify you from your genome sequence?

9%

27% 30%

26%

8%

Impossible Very Difficult Difficult Not very difficult

Easy

HCP = healthcare provider

Respondent Actions Post-Disclosure

Differences between HCPs and non-HCPs

Motivations Proportion (Very/Somewhat Important)

Personal interest in genetics in general 99% Curiosity about my genetic make-up 98% Desire to participate in research to help others 92% Interest in finding out things to do to improve my health 81%

Interest in learning about my response to medications 81%

It seemed fun and entertaining 77% Desire to plan for the future 69% Interest in my ancestry 66% Interest in finding out about personal disease risk 41% Concern about family history of possible or confirmed genetic condition* 21%

Characteristics Proportion

Mean Age (Range) 53 (22-92) Male 67% Caucasian 85% Doctorate or Professional Degree 77% Income ≥ $100,000 76% Married 67% Has Child(ren) 66% Healthcare Provider or Clinical Researcher 24%

Methods

Agreement with attitudinal items HCPs (n=58)

Non-HCPs

(n=192)

χ2 p-value

Very comfortable with the idea of sharing genome data 71% 64% 0.32

Discussed results with a healthcare provider 62% 46% 0.04

Health insurance should cover PGS 50% 71% 0.004

Genetic information should be part of a standard medical record 71% 89% 0.001

Tests like these should only be available through a doctor 39% 22% 0.008

People have a right to access their own genetic information without going through a medical professional 62% 86% <0.0001

The knowledge I gained about PGS through this process has influenced my medical practice 59% n/a n/a

*Respondents motivated by family history of a possible genetic condition were more likely than others to report learning something from PGS that would improve their health (p=0.003).

• Social network services: 8%

• Health/disease-based social network services: 7%

Would you share your genome sequence publicly? Only 2% indicated they would not

share their genome data.

Note: As a requirement for enrollment in PGP, participants agree to have a copy of their Genome Research Report shared publicly. Other sites do not have this requirement.

Yes, with my identity attached 37% Yes, but anonymously 79%

Personal Genome Sequencing (PGS)

Genomic Results Reported

PeopleSeq Survey Sent

PGS Group Ordering MD Return of Results (MD/GC)

Self Exploration

Access to Raw Data

UYG ✓ ✓ ✓ -

HealthSeq - ✓ - ✓

PGP - - - ✓

Have your results prompted you to make an appointment with any healthcare provider(s)?

No 80%

Yes 15%

I plan to 5%

12% of respondents reported having a medical exam or procedure based

on their sequencing results.

76%

17% 35%

Diagnostic test of procedure

DNA sequence

confirmation

Other

*Respondents could select more than one option

•  Expand number of PGS cohorts Ø 10,000 potential

participants to survey

•  Implement pre/post survey design to capture initial impact of PGS

•  Create annual follow-up surveys to track outcomes of PGS longitudinally

Comparison of PGS Cohort Details

Illumina UYG

3,400 participants

CEO/MD/PhD Genome Projects (Thomas Caskey)

150 participants

Harvard Personal Genome

Project (George Church)

1,000 participants

Mount Sinai Wellness Study (Eric Schadt)

500 participants

Nevada Personalized

Medicine Initiative (Martin Schiller)

300 participants

Pioneer 100 (Lee Hood)

3,000 participants

MedSeq & BabySeq Projects

(Robert Green)

175 participants

The PeopleSeq Consortium

2016

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