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$r 10 – H12r H p r1 US2 - lasphub.comlasphub.com/tutorial/LASP-10.pdf · PTSDL +o?#a+L+PTSDU 1a...

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3/4/19 Large-scale Atomic Simulation with neural network Potential \PFNvvuMgaGNtB3 .- LASP _$r10 – );-H<12cQIr 1 "e.(L>^Uw#i=`e412A2ST1 ! l @8'ST`pqphmLb2*_W(Lie" e. " #$%& = ( ) * !−! ,-. ) &K8H@L! ,-. 8e4ST1f!0 wOdRlj50N.guZ,"e.(LaMDVJ 5e412A2ST`1f!! ,-. sknr0 cQ);-H<ljKe"e.(Lo?p ]=L71:j[E2.gu9BIr:_ CIr1US2Xb
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Page 1: $r 10 – H12r H p r1 US2 - lasphub.comlasphub.com/tutorial/LASP-10.pdf · PTSDL +o?#a+L+PTSDU 1a PTSD8a 2L S1S S2S S38SS cos11a-12 S4SS cos`L S5S S6SS cos`L 3 PTSDUe 0)1a U0. 3/4/19

3/4/19

Large-scale Atomic Simulation with neural network Potential

v B . -

LASP 10 – H 1 2 r

1

U e 1 2S 1 !8 S 2

"#$%& = ()* ! − !,-. )

K8H !,-.8e S 0

aMDe 1 2S !,-. r0

H pL 1 2 rr1US2

Page 2: $r 10 – H12r H p r1 US2 - lasphub.comlasphub.com/tutorial/LASP-10.pdf · PTSDL +o?#a+L+PTSDU 1a PTSD8a 2L S1S S2S S38SS cos11a-12 S4SS cos`L S5S S6SS cos`L 3 PTSDUe 0)1a U0. 3/4/19

3/4/19

Large-scale Atomic Simulation with neural network Potential

2 B . -

LASP 10 – 0

• %block USbiasbrick

U v eL

2 / / / e/ OP0

• %block USbiastype U 8

• %block USbiasref U !"#$• %block USrefbond

• %block USbiasK e

• US.sampletime 5

usoutput U !a 5*dt

• US.equilibrium 1000 H1000*dtv U

2

LASP

potential NN us potential p

NN1S r us

NN-13 NN-14 example

Page 3: $r 10 – H12r H p r1 US2 - lasphub.comlasphub.com/tutorial/LASP-10.pdf · PTSDL +o?#a+L+PTSDU 1a PTSD8a 2L S1S S2S S38SS cos11a-12 S4SS cos`L S5S S6SS cos`L 3 PTSDUe 0)1a U0. 3/4/19

3/4/19

Large-scale Atomic Simulation with neural network Potential

2 a U . -

LASP 10 – B 0

3

USbiasbrick S + + H 0

26 2Atom, Bond1Angle1Coord1Qval, AtomPTSD

+ + 02p

2 18r v

H 02 e e L 0

21 2 TypePTSD

Page 4: $r 10 – H12r H p r1 US2 - lasphub.comlasphub.com/tutorial/LASP-10.pdf · PTSDL +o?#a+L+PTSDU 1a PTSD8a 2L S1S S2S S38SS cos11a-12 S4SS cos`L S5S S6SS cos`L 3 PTSDUe 0)1a U0. 3/4/19

3/4/19

Large-scale Atomic Simulation with neural network Potential

e p . -

LASP 10 – S B 0 1 a

4

1. S 0Atom1 r US (x/y/z)2

S Hp Ucell8 0 v stress B 1

L a S 0slab 1

Page 5: $r 10 – H12r H p r1 US2 - lasphub.comlasphub.com/tutorial/LASP-10.pdf · PTSDL +o?#a+L+PTSDU 1a PTSD8a 2L S1S S2S S38SS cos11a-12 S4SS cos`L S5S S6SS cos`L 3 PTSDUe 0)1a U0. 3/4/19

3/4/19

Large-scale Atomic Simulation with neural network Potential

p v HU . -

LASP B 10 – L 0 1

5

3. 0Angle1r 2 e a2

r

e 2r

2. 0Bond1 8r 2 e 8 r

e S r0 1r e2

r 2 -1,1,0 a r2b

2 0,0,0

Page 6: $r 10 – H12r H p r1 US2 - lasphub.comlasphub.com/tutorial/LASP-10.pdf · PTSDL +o?#a+L+PTSDU 1a PTSD8a 2L S1S S2S S38SS cos11a-12 S4SS cos`L S5S S6SS cos`L 3 PTSDUe 0)1a U0. 3/4/19

3/4/19

Large-scale Atomic Simulation with neural network Potential

e S . -

LASP 10 – L 0 1 p

6

4. 0Coord1 v

2 v v 2H v 2

!"

1 − %" − %&'&

(

1 − %" − %&'&

)(

r v vi2di i v

2 Ud0, n a2 0.0, 6

6.0 angstron2 av 8 rr0 a 0 %block UsrefbondB 1

Page 7: $r 10 – H12r H p r1 US2 - lasphub.comlasphub.com/tutorial/LASP-10.pdf · PTSDL +o?#a+L+PTSDU 1a PTSD8a 2L S1S S2S S38SS cos11a-12 S4SS cos`L S5S S6SS cos`L 3 PTSDUe 0)1a U0. 3/4/19

3/4/19

Large-scale Atomic Simulation with neural network Potential

e B . -

LASP v 10 – H 0 1

7

5. 0OP1 0Qval1L 2 L order

parameter 2

4"2$ + 1 '

()*+

+',

-./01ℎ3 1 − 5,5678

9 -,:

;:

rS L L i2di i L8 L , -, 8 aL Up

Y

2B l0 2242612 2

n2S 2 22 S6.02 rS

Page 8: $r 10 – H12r H p r1 US2 - lasphub.comlasphub.com/tutorial/LASP-10.pdf · PTSDL +o?#a+L+PTSDU 1a PTSD8a 2L S1S S2S S38SS cos11a-12 S4SS cos`L S5S S6SS cos`L 3 PTSDUe 0)1a U0. 3/4/19

3/4/19

Large-scale Atomic Simulation with neural network Potential

p . -

LASP 10 – B L081 S

8

6. e U H0AtomPTSD1 a

2 e U H a0TypePTSD12 aatomic power-type structural descriptora 2 S1 S62 DOI: 10.1039/C8SC03427C

NN-18

Page 9: $r 10 – H12r H p r1 US2 - lasphub.comlasphub.com/tutorial/LASP-10.pdf · PTSDL +o?#a+L+PTSDU 1a PTSD8a 2L S1S S2S S38SS cos11a-12 S4SS cos`L S5S S6SS cos`L 3 PTSDUe 0)1a U0. 3/4/19

3/4/19

Large-scale Atomic Simulation with neural network Potential

v B . -

LASP 10 – H 1 2 r

9

p 1TypePTSD2L +PTSD +PTSDL

PTSD 1S1 S22 1S3,S4,S52 1S62

PTSDL + + L +PTSD U1 a PTSD 8a2 L

S1 SS2 SS3 8 S S cos 11a-12S4 S S cosS5 SS6 S S cos

3 PTSD U e 0 1 aU0

Page 10: $r 10 – H12r H p r1 US2 - lasphub.comlasphub.com/tutorial/LASP-10.pdf · PTSDL +o?#a+L+PTSDU 1a PTSD8a 2L S1S S2S S38SS cos11a-12 S4SS cos`L S5S S6SS cos`L 3 PTSDUe 0)1a U0. 3/4/19

3/4/19

Large-scale Atomic Simulation with neural network Potential

e e . -

LASP 10 – 0 1

10

L0’rc_’+ L1 r v0 1

U Be p a2

a8 U pap p a Up

L 2 a8 e Lp H S8Bond_1 – Bond_2p

Usbiastype L+ U +

Page 11: $r 10 – H12r H p r1 US2 - lasphub.comlasphub.com/tutorial/LASP-10.pdf · PTSDL +o?#a+L+PTSDU 1a PTSD8a 2L S1S S2S S38SS cos11a-12 S4SS cos`L S5S S6SS cos`L 3 PTSDUe 0)1a U0. 3/4/19

3/4/19

Large-scale Atomic Simulation with neural network Potential

a a . -

LASP 10 – B 0 1p e

11

USbiasrefH +

USbiasKr

8r 02x2) K : eV/ U S

• USbiastypeUSbiasbrick

• USbiasK r 2USbiasrefLUSbiastype H

v

Page 12: $r 10 – H12r H p r1 US2 - lasphub.comlasphub.com/tutorial/LASP-10.pdf · PTSDL +o?#a+L+PTSDU 1a PTSD8a 2L S1S S2S S38SS cos11a-12 S4SS cos`L S5S S6SS cos`L 3 PTSDUe 0)1a U0. 3/4/19

3/4/19

Large-scale Atomic Simulation with neural network Potential

12U e . -

LASP 10 – 0

8 e2 H NN-14 example0Cu + H2O -> Cu/ H* + OH*

B H 1S Ha L

B H 1

0.9 --- 1.7

12

Page 13: $r 10 – H12r H p r1 US2 - lasphub.comlasphub.com/tutorial/LASP-10.pdf · PTSDL +o?#a+L+PTSDU 1a PTSD8a 2L S1S S2S S38SS cos11a-12 S4SS cos`L S5S S6SS cos`L 3 PTSDUe 0)1a U0. 3/4/19

3/4/19

Large-scale Atomic Simulation with neural network Potential

S 12 aH 8 . -

LASP 10 – B 0

13

Cu+H2O

Cu/H* + OH*Cu+H2O

MD

Cu/H* + OH*

a2 U NN-140Cu + H2O -> Cu/ H* + OH*

NVT MD L

Page 14: $r 10 – H12r H p r1 US2 - lasphub.comlasphub.com/tutorial/LASP-10.pdf · PTSDL +o?#a+L+PTSDU 1a PTSD8a 2L S1S S2S S38SS cos11a-12 S4SS cos`L S5S S6SS cos`L 3 PTSDUe 0)1a U0. 3/4/19

3/4/19

Large-scale Atomic Simulation with neural network Potential

12 B U . -

LASP L 10 – 8 0

14

S2

H

NN-14 Cu + H2O -> Cu/ H* + OH*


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