Researching with the Big Guys: Community Colleges and Cancer Research
Dr. Firouz DarroudiNelson RodriguesDr. Michael Long
April 5, 2013
Presentation Overview• The Cost of Cancer Research• Community College Cancer Research Activity• CNAQ Cancer Research – Origins and
Development• Training Students for Cancer Research• Future Plans
The Cost of Cancer Research
• Cancer research is expensive– Personnel (scientists, oncologist, radiologists
– Equipment (microscopy, MRIs, shipment costs!)
– Infrastructure (research complexes, compliance)
– Drug development and patenting
Cancer Microscopy3D Image of Breast Cancer Cell from SEM 3D Image of Lung Cancer Cells from SEM
Cancer Research InfrastructureGerman Cancer Research Centre M.D. Anderson Cancer Center
Cancer Drug Development• Average cost of R&D to bring one cancer drug
to market: $802 million • Risk!!!
– Only 1 in 1000 new compounds make it to human trials testing
– Of those, only 1 in 5 receive FDA approval
Community College Cancer Research Activity
• St. Vincent and the Grenadines Community College (Caribbean)
• Aroka Ramsey Community College (Minnesota)
• Capital Community College (Connecticut)
Community College Cancer Research Activity
• Other Cancer Research Activity at CCs– Pain studies
– Ethnographic studies
– KAP studies
– Lifestyle research
– Nutrition studies
Community College Cancer Research Activity
• Other Initiatives– CIHR Community College Innovation Program (Canada)
– Community College Undergraduate Research Initiative (CCURI) www.ccuri.org (US)
– NIH’s Community College Summer Enrichment Program (US)
– QNRF (UREP Program) in Qatar
CNAQ Cancer Research – Origins and Development
• Research Environment in Qatar is unique. National Priorities tied to research in order to diversify from a carbon economy. – well resourced financially (2.8% GDP) – QNRF– But …
• Little data• Few grads, post docs• Lab spaces, equipment, technicians in early stages• Top-down research model vs lateral or bottom-up
CNAQ Resources
• Support – Executive, Deans, Lab Managers, Facilities, Procurement
• Faculty and Students - enthusiastic
• Equipment
CNAQ Equipment Zeiss Axio A1 Imager Flourescence Microscope Centrifuge and Waterbath
CNAQ Equipment-70 Freezer Polymerase Chain Reaction (PCR)
CNAQ Equipment Microscopes/Lab Bench Sample Preparation Fume Hood
Professor Firouz Darroudi
• Radiation Protection Training (IAEA) for MRTs• Research lectures• Recognized potential of CNAQ Resources:
Faculty, Students, Equipment• Fertile research ground in Qatar
Professor Firouz Darroudi• Experience with developing international labs• Research Consultant • Workshops
– Cytogenetic Short Term Assays in Genetic Toxicology
– Genetic Counseling
– Radiation Mutagenesis & Protection
– Human Risk Assessment & Population Monitoring
Training Students for Cancer Research
1.Detecting causes of cancer
2.Detecting biomarkers for cancer of different origins
3.Improving cancer therapy regimen
Training Students for Cancer Research
Training is mainly implemented by organizing different workshops on cellular and molecular biology assays in order to explore the effect of physical and chemical agents on human DNA by analysing chromosomal alterations. WHY?
1. DNA in the nucleus is organized via chromosomes
2. Chromosomal aberrations were found to be the biomarker for cancer in unexposed cohorts
Responses of the cell upon induction of DNA damage
Cell death (Apoptosis, necrosis)
Cell cycle arrest
G1S
G2M
DNA Repair Complete
Incomplete
*Genomic instability
*Mutations
*Chromosomal aberrations
Cancer and Genetic
Diseases
Damaged
DNA• G1/S checkpoint
(ATM, ATR, p53)
• S-phase checkpoint(ATM, p53, Chk2)
• G2/M checkpoint(Cdc2 / CyclinB)
DSB
SS
B
BD
SSB = Single Strand Breaks
DSB = Double Strand breaks
BD = Base Damage
Biological Cytogenetic Assays for Assessing genotoxic potential of Biological Cytogenetic Assays for Assessing genotoxic potential of physical and chemical agents in mammalian cellsphysical and chemical agents in mammalian cells
1.1. DicentricsDicentrics
(in metaphases)(in metaphases)
2. Micronuclei 2. Micronuclei (in binucleated cells)(in binucleated cells)
3. Premature Chromosome Condensation (PCC) 3. Premature Chromosome Condensation (PCC) (in interphases)(in interphases)
4. Translocations using Fluorescence 4. Translocations using Fluorescence in situin situ hybridization (FISH) hybridization (FISH) (in metaphases)(in metaphases) Darroudi et al., International Atomic Energy Agency (IAEA), Technical Reports Series No. 405, 2001, 2011.Darroudi et al., International Atomic Energy Agency (IAEA), Technical Reports Series No. 405, 2001, 2011.Darorudi et al., Medical Preparedness and Response, Educational Materials IAEA and WHO, 2002Darorudi et al., Medical Preparedness and Response, Educational Materials IAEA and WHO, 2002
I.A.E.A. Manuals (I.A.E.A. Manuals (Darroudi and co-workersDarroudi and co-workers) on Cytogenetic Assays for ) on Cytogenetic Assays for Detecting Chromosomal Alteration immediately and retrospectivelyDetecting Chromosomal Alteration immediately and retrospectively
Clinical Trials(Cell killing, Cancer)
Cellulare Damages (DNA, Protein, Membrane, Cellular organization )
Difference in sensitivity
Genetic Differences
Future Plans:
Future Plans:DEPARTMENT OF Radiation Genetics and Chemical
Mutagenesis at CNA-Q:
A multi–disciplinary approach
DNA DAMAGE RESPONSES AND REPAIR, GENOMIC INSTABILITY CHEMICAL AND RADIATION INDUCED
CANCER
Low and high dose Radiationand Chemicals
CancerDNA damage
DNA Human
Cell Tissue / organ
Smoking (25-40%)
Nutrition (10-70%)
Alcohol (2-4%)
Occupation (2-8%)
Mycotoxins (4%)
Geophysical Faktors (2-4%)Infections (2-4%)
Environmental pollution (1-5%)Sunlight / skin (2%)
Medicinal causes (2-4%)Nitrosamines / stomach (3%)
Estimated Cancer Mortality (USA)(after Doll and Peto 1981 and Marquardt 1994, 2004)
1
2
CASE-MultiCASE
Elucidating the genotoxic, anti-genotoxic and anti-cancer activity of plants, spices and dietary componeents in Qatar
Future Plans: Application of State of the art molecular biology assays
1 DSB
One -H2AX focus
Human
lymphocyte
Antibody anti phosphoserine-H2AX
-H2AX : Applications-H2AX : Applications
Environmental studies
Clinical Trials Patients Care
Redon et al., 2010Basic research on DNA repair
Darroudi et al., 2007 (Mut. Res.); Redon et al., 2010
Redon et al., 2009;
Vrouwe…Darroudi, 2007 (HMG)
Van Lelij…Darroudi et al., 2009 (Plos One)
Aging
Nakamuraet al., 2004
Drug Development
Bonner et al., 2008
Tumorigenesis
Sedelnikovaet al., 2004
DSBDSB
-H2AX
Radiation Research
Application of COBRA-MFISH for detecting structural and numerical aberrations (Biomarkers for cancer)
• A normal metaphase (XX) X-irradiated human peripheral blood lymphocytes
Szuhai & Tanke, Nature Protoc. 1, 264-275, 2006;
Darroudi et al., Radiation Protection Dosimetry 99, 189-192, 2002;
Bezrookove ..Darroudi., Genes, Chromosomes & Cancer 38, 177-186, 2003;
Darroudi et al; Cancer Letters 287, 67-74, 2010
Darroudi et al., IJRB, 2013.
f”=fragment; RT=Reciprocal Translocation; Dic=Dicentric; bf”=bicoloured fragment
To speed up the processes of analyses by applying, Metasystem autmatic analyser for: Automatic analysis of Micronclei in binucleated cells, Spot counting, Metaphase finder, Comet
New Prospectives For Detecting and Treating Cancer of Different Origins
1.Discovering New Biomarker(s) for Cancer
2. Improving Therapy Regimen for Cancer Patients
3.Discovering Origin of Cancer
4.Discovering New Drugs against Cancer
A search for detecting anticancer drugs against: Breast, Ovarian and Melanoma Cancer Calomeria amoranthoides
A Potent and Unique Anti-Cancer Drug
Cytogenetic assays as tools to elucidate human genome:To detect biomarkers for cancer
To improve cancer therapy regimen (by studying local national plant resources in Qatar)
Thank you for your attention.